Diff of the two buildlogs: -- --- b1/build.log 2025-03-21 02:15:47.036704449 +0000 +++ b2/build.log 2025-03-21 02:21:25.537452630 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 22 20:27:01 -12 2026 -I: pbuilder-time-stamp: 1776932821 +I: Current time: Fri Mar 21 16:15:50 +14 2025 +I: pbuilder-time-stamp: 1742523350 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,51 +26,83 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/458034/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 21 02:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4da93dfc810a4ccd96fc2f00a5cbb1ca' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='458034' - PS1='# ' - PS2='> ' + INVOCATION_ID=85131c8220294e24ae21e88d11b801a7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2861941 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eiuVPgvS/pbuilderrc_2keP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eiuVPgvS/b1 --logfile b1/build.log mmseqs2_15-6f452+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eiuVPgvS/pbuilderrc_DBU3 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eiuVPgvS/b2 --logfile b2/build.log mmseqs2_15-6f452+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/458034/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +219,7 @@ Get: 65 http://deb.debian.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 42.9 MB in 1s (66.1 MB/s) +Fetched 42.9 MB in 0s (123 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19806 files and directories currently installed.) @@ -470,7 +502,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 15-6f452+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -550,8 +586,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.2s) --- Generating done (0.2s) +-- Configuring done (1.5s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -621,8 +657,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.4s) --- Generating done (0.2s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -692,8 +728,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.8s) --- Generating done (0.1s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -763,8 +799,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.6s) --- Generating done (0.2s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -834,8 +870,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.7s) --- Generating done (0.1s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -907,8 +943,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.1s) --- Generating done (0.1s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -936,97 +972,99 @@ make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' make -f 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/ludcmp.cpp [ 4%] Generating ../generated/VTML80.out.h -[ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprob.cpp +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML80.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -[ 5%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 6%] Generating ../generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=15-6f452+ds-2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/version/Version.cpp +[ 4%] Generating ../generated/VTML40.out.h +[ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML40.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h -[ 6%] Built target version -[ 7%] Generating ../generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 7%] Generating ../generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp +[ 7%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp [ 7%] Generating ../generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h @@ -1034,43 +1072,12 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -[ 8%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 9%] Generating ../generated/PAM30.out.h +[ 8%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 10%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -1106,266 +1113,295 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 12%] Generating ../generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h -[ 12%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +[ 10%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +[ 11%] Generating ../generated/Library255_may17.lib.h +[ 11%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +[ 11%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h -[ 12%] Generating ../generated/cs219.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp +[ 11%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h -[ 13%] Generating ../generated/krona_prelude.html.h +[ 12%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h -[ 13%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h -[ 14%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h +[ 13%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h -[ 15%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 15%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp +[ 13%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -[ 15%] Built target cacode -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 15%] Built target tinyexpr -[ 15%] Generating ../generated/easysearch.sh.h +[ 13%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h +[ 14%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h -[ 16%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 14%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h -[ 17%] Generating ../generated/easytaxonomy.sh.h +[ 14%] Built target tinyexpr +[ 15%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h -[ 18%] Generating ../generated/easyrbh.sh.h +[ 16%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h -[ 19%] Generating ../generated/blastp.sh.h +[ 17%] Generating ../generated/blastp.sh.h +[ 17%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h -[ 19%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -[ 19%] Generating ../generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -[ 20%] Generating ../generated/rbh.sh.h +[ 17%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +[ 17%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h -[ 21%] Generating ../generated/linclust.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +[ 19%] Generating ../generated/linclust.sh.h +[ 19%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +[ 19%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h +[ 20%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h -[ 21%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h -[ 22%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h -[ 23%] Generating ../generated/update_clustering.sh.h +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +[ 21%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h -[ 24%] Generating ../generated/searchtargetprofile.sh.h +[ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h -[ 25%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp +[ 23%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h -[ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp +[ 23%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h -[ 25%] Generating ../generated/translated_search.sh.h +[ 23%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp -[ 25%] Built target ksw2 -[ 26%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +[ 24%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h +[ 25%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp +[ 25%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h -[ 27%] Generating ../generated/enrich.sh.h -[ 27%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h +[ 25%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h +[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h +[ 25%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -[ 27%] Generating ../generated/linsearch.sh.h +[ 25%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -[ 27%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 28%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h +[ 26%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h +[ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +[ 26%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +[ 26%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h +[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h +[ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +[ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 28%] Built target alp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' [ 28%] Built target generated +make[4]: Leaving directory 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: @@ -1553,10 +1589,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1590,7 +1623,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1626,8 +1662,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1698,10 +1734,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1734,13 +1769,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1773,8 +1807,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: @@ -1810,8 +1842,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -1849,10 +1887,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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+cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -1890,12 +1930,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1930,6 +1964,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o @@ -1972,11 +2008,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2009,9 +2043,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2046,9 +2085,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2084,7 +2121,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2117,13 +2155,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/HeaderSummarizer.cpp +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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-DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, @@ -2160,12 +2198,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryMapped.cpp -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: @@ -2201,6 +2233,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp +[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -2239,8 +2275,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -2274,12 +2308,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2312,14 +2346,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2352,9 +2384,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -2379,7 +2414,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -2393,12 +2427,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2435,6 +2465,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: @@ -2470,6 +2502,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2507,22 +2545,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2555,6 +2582,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: @@ -2590,24 +2619,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2640,6 +2661,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -2682,12 +2718,12 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: @@ -2758,7 +2794,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -2797,6 +2832,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp @@ -2804,9 +2840,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2840,16 +2875,17 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -2881,8 +2917,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2921,6 +2955,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2956,8 +2992,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2991,7 +3026,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3030,8 +3066,15 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3064,8 +3107,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3080,6 +3124,7 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ @@ -3101,10 +3146,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3137,16 +3179,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3179,6 +3214,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3214,8 +3251,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3248,10 +3284,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3284,6 +3318,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3320,6 +3356,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3354,8 +3392,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3468,20 +3504,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3514,8 +3538,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3548,8 +3577,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3582,8 +3617,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3617,10 +3657,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3654,8 +3691,12 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3689,12 +3730,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3766,10 +3802,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3803,7 +3837,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3836,11 +3873,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3873,10 +3915,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3911,10 +3949,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3948,7 +3984,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3987,10 +4023,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4025,6 +4057,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4059,9 +4093,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4095,10 +4133,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4131,6 +4167,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4167,12 +4205,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4207,6 +4239,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4243,6 +4281,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4277,16 +4319,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4320,9 +4356,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4355,8 +4389,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4391,6 +4423,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4463,6 +4499,12 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4497,8 +4539,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4536,10 +4576,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4574,10 +4610,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4610,10 +4644,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4646,6 +4678,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4680,9 +4723,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: @@ -4718,18 +4760,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4762,10 +4794,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4798,6 +4830,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4832,8 +4866,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -4872,6 +4904,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4908,8 +4946,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4950,10 +4986,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4990,12 +5022,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5031,8 +5066,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5065,6 +5099,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -5106,7 +5142,9 @@ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5139,10 +5177,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5154,6 +5191,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { @@ -5175,8 +5213,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -5216,7 +5252,7 @@ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5250,7 +5286,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5319,8 +5355,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5355,10 +5389,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5393,8 +5431,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -5471,8 +5507,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5507,8 +5543,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5545,10 +5581,12 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5581,12 +5619,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5765,18 +5801,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd 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src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5810,7 +5842,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5844,10 +5879,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5880,6 +5912,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5914,6 +5948,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5948,18 +5988,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5992,8 +6026,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6027,7 +6063,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6060,8 +6098,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6130,12 +6168,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6206,14 +6238,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -6251,6 +6283,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6285,8 +6321,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -6324,6 +6358,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6393,6 +6429,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6461,12 +6499,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: @@ -6502,16 +6540,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6544,8 +6574,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6578,8 +6610,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6612,8 +6650,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6648,14 +6684,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6693,7 +6727,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6726,6 +6760,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: @@ -6761,15 +6803,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6802,14 +6841,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6842,10 +6876,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6880,10 +6914,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6916,9 +6951,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6951,8 +6989,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6985,10 +7025,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7021,8 +7059,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -7060,7 +7096,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7094,7 +7130,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7193,111 +7229,163 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/ksw2 && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2/ksw2_extz2_sse.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h [ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a [ 6%] Generating ../generated/nucleotide.out.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp -[ 7%] Generating ../generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML40.out -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -[ 7%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h -[ 7%] Generating ../generated/blosum62.out.h +[ 6%] Generating ../generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 8%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 8%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp +[ 7%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 7%] Built target version cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp +[ 8%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +[ 9%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +[ 9%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +[ 9%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 10%] Generating ../generated/krona_prelude.html.h +[ 10%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp +[ 12%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -7333,262 +7421,210 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h -[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -[ 11%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -[ 11%] Generating ../generated/Library255_may17.lib.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -[ 12%] Generating ../generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp -[ 13%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h -[ 13%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h -[ 14%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h -[ 14%] Built target cacode -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -[ 16%] Built target tinyexpr -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h -[ 16%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -[ 17%] Generating ../generated/easysearch.sh.h +[ 12%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h -[ 17%] Generating ../generated/easycluster.sh.h +[ 12%] Generating ../generated/easycluster.sh.h +[ 12%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h -[ 18%] Generating ../generated/easytaxonomy.sh.h +[ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h +[ 14%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h -[ 19%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h -[ 20%] Generating ../generated/blastp.sh.h +[ 15%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h -[ 20%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +[ 15%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 20%] Built target ksw2 -[ 20%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h +[ 16%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h -[ 20%] Generating ../generated/rbh.sh.h +[ 16%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h -[ 21%] Generating ../generated/linclust.sh.h -[ 21%] Generating ../generated/clustering.sh.h +[ 17%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h +[ 17%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h -[ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h +[ 18%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 23%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h +[ 19%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h -[ 24%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h -[ 25%] Generating ../generated/createindex.sh.h -[ 25%] Generating ../generated/translated_search.sh.h +[ 20%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 21%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h -[ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -[ 26%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h +[ 21%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h +[ 22%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 22%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 23%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +[ 23%] Built target tinyexpr +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +[ 25%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -[ 27%] Generating ../generated/blastn.sh.h -[ 27%] Generating ../generated/enrich.sh.h -[ 27%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp +[ 25%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +[ 26%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h +[ 26%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -[ 28%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh -[ 28%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +[ 26%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +[ 26%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h +[ 27%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h +[ 27%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h +[ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' @@ -7601,30 +7637,30 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp +[ 30%] Building CXX object 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -7661,10 +7697,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7700,8 +7735,9 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7735,7 +7771,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7771,9 +7811,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7807,10 +7846,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7992,8 +8028,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8027,11 +8066,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8070,8 +8106,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -8109,16 +8143,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -8190,6 +8222,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o @@ -8230,11 +8266,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8267,11 +8301,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8420,11 +8456,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryMapped.cpp -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: @@ -8460,9 +8491,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp +[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp +[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8495,7 +8530,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8536,6 +8572,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -8574,12 +8612,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -8614,12 +8648,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8687,13 +8726,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8728,11 +8764,13 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8765,15 +8803,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8806,14 +8844,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8848,11 +8881,12 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8885,8 +8919,29 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -8925,25 +8980,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: @@ -8981,10 +9017,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -9020,8 +9052,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -9060,6 +9092,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -9099,6 +9135,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, @@ -9135,12 +9173,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -9179,6 +9211,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: @@ -9215,7 +9251,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9248,12 +9284,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9286,11 +9318,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9324,7 +9361,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9357,18 +9397,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9401,9 +9431,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9436,12 +9473,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9475,7 +9509,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9542,6 +9576,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -9728,12 +9764,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9803,12 +9837,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9841,10 +9877,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9878,8 +9913,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9912,6 +9946,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -9951,8 +9987,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10022,6 +10056,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10056,12 +10096,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10096,10 +10136,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10133,10 +10174,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10169,10 +10207,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10241,6 +10275,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10275,12 +10315,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10315,11 +10353,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10353,10 +10391,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10427,8 +10463,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10463,6 +10497,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -10503,14 +10539,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10543,10 +10573,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10579,10 +10615,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10616,7 +10650,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10632,7 +10666,16 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -10649,15 +10692,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -10683,8 +10717,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10717,12 +10764,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10758,10 +10799,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10828,8 +10866,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10864,14 +10904,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10890,9 +10922,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -10943,8 +10972,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: @@ -10980,8 +11018,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11016,8 +11052,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -11054,6 +11088,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11088,6 +11124,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -11126,10 +11168,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -11166,17 +11204,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11212,7 +11243,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11245,20 +11276,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -11290,7 +11324,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11323,10 +11357,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11359,12 +11401,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11398,7 +11438,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11431,10 +11473,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11467,14 +11509,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11508,7 +11544,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11615,6 +11651,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11649,8 +11687,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o @@ -11689,12 +11725,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11765,10 +11799,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11843,8 +11879,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11879,6 +11913,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: @@ -11914,8 +11952,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11950,6 +11986,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: @@ -11985,8 +12023,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12063,10 +12099,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12100,7 +12137,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12133,13 +12170,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12172,8 +12204,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12208,12 +12248,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12247,7 +12287,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12280,10 +12320,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12354,8 +12390,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12390,15 +12424,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12431,6 +12460,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12465,10 +12504,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12503,9 +12542,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12538,16 +12577,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12580,8 +12613,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12615,7 +12651,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12648,11 +12687,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12687,6 +12723,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12721,14 +12759,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: @@ -12764,8 +12794,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12798,12 +12836,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12837,7 +12871,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12904,14 +12938,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12944,14 +12979,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12984,11 +13017,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13021,10 +13055,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: @@ -13060,8 +13102,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -13096,14 +13136,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13136,13 +13173,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13175,6 +13207,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -13211,8 +13245,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -13248,7 +13282,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13281,8 +13317,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13316,9 +13354,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13352,7 +13388,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13451,121 +13487,164 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make[4]: Entering directory 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprob.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/c++ -DGIT_SHA1=15-6f452+ds-2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/version/Version.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp +[ 4%] Generating ../generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML80.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h -[ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_random.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h -[ 4%] Generating ../generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h [ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp +[ 5%] Generating ../generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out -[ 6%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h +[ 6%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out [ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_random.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +[ 8%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h [ 8%] Built target version -[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 9%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h +[ 9%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 11%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h +[ 11%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -13601,118 +13680,75 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Generating ../generated/libPolished_8.lib.h -[ 10%] Generating ../generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +[ 12%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp -[ 10%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h -[ 11%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 11%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 12%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -[ 13%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -[ 13%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -[ 14%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h -[ 14%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 13%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -[ 14%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp -[ 14%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h +[ 13%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp +[ 14%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h -[ 16%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +[ 15%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h -[ 17%] Generating ../generated/easyrbh.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +[ 16%] Generating ../generated/easyrbh.sh.h +[ 16%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +[ 17%] Built target tinyexpr +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp [ 18%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 18%] Built target cacode [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 19%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 20%] Built target ksw2 -[ 20%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h [ 20%] Generating ../generated/map.sh.h @@ -13725,17 +13761,17 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h [ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h [ 21%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h @@ -13743,106 +13779,106 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h [ 23%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h [ 24%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h [ 25%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h [ 25%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h [ 25%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h [ 26%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp +[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh [ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h [ 27%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h [ 27%] Generating ../generated/blastn.sh.h -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh [ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 27%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h +[ 27%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -[ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h +[ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated [ 28%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp @@ -13850,9 +13886,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 28%] Built target generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' [ 28%] Built target alp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +[ 28%] Built target generated make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake "--color=" @@ -13862,32 +13898,29 @@ [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13921,7 +13954,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13955,10 +13991,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13993,8 +14026,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14028,7 +14063,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14063,10 +14101,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14101,10 +14139,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14139,10 +14176,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14175,13 +14212,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14216,9 +14251,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14252,8 +14288,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14287,11 +14324,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14324,10 +14358,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -14365,16 +14397,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -14412,6 +14444,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: @@ -14447,6 +14481,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -14481,12 +14517,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: @@ -14522,6 +14552,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -14558,15 +14596,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14599,10 +14634,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14635,15 +14673,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14676,14 +14712,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryMapped.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -14713,12 +14747,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -14732,6 +14772,7 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ @@ -14752,6 +14793,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -14786,12 +14828,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -14901,19 +14941,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14988,17 +15024,11 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15032,8 +15062,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15066,12 +15098,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15104,28 +15135,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15158,6 +15177,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ | ^ @@ -15202,6 +15238,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: @@ -15237,10 +15275,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -15276,8 +15310,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -15316,6 +15348,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -15353,10 +15393,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, @@ -15393,8 +15429,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -15433,13 +15467,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15473,7 +15508,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15508,8 +15544,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15544,6 +15578,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o @@ -15585,8 +15621,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15621,8 +15655,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15657,6 +15691,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -15693,8 +15729,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15727,13 +15766,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15766,8 +15802,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15802,6 +15836,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15870,6 +15906,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15904,10 +15942,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15942,8 +15976,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15978,6 +16012,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o @@ -15986,8 +16022,14 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16024,8 +16066,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16059,10 +16100,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16095,17 +16133,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16139,8 +16171,12 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16244,10 +16280,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16280,8 +16314,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16321,10 +16357,7 @@ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16358,7 +16391,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16391,8 +16427,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -16427,10 +16461,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16465,8 +16501,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16499,14 +16537,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16540,7 +16578,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16574,8 +16612,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16609,10 +16649,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16645,14 +16683,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16685,10 +16719,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16721,6 +16757,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -16757,16 +16795,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16799,8 +16829,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -16837,8 +16869,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16943,10 +16979,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16963,6 +16997,12 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -16979,14 +17019,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -17015,8 +17047,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17050,10 +17093,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17086,14 +17126,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17126,13 +17163,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17165,6 +17197,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17201,6 +17237,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: @@ -17236,8 +17274,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17314,12 +17350,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17352,8 +17386,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17422,16 +17462,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -17468,14 +17498,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -17487,11 +17514,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -17501,25 +17523,11 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -17532,6 +17540,37 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { @@ -17544,7 +17583,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17613,14 +17653,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -17693,6 +17725,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated 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CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17727,10 +17765,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17764,7 +17800,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17799,8 +17835,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17835,6 +17869,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17857,6 +17898,7 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -17869,12 +17911,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17909,8 +17945,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17944,9 +17984,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17979,14 +18017,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -18025,10 +18057,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18062,9 +18100,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18103,7 +18139,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -18112,7 +18147,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { @@ -18172,6 +18206,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18206,13 +18244,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18229,7 +18263,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -18246,9 +18279,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18281,6 +18317,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -18318,12 +18358,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18358,6 +18392,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18426,14 +18464,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18466,17 +18498,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18484,7 +18519,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -18494,17 +18528,9 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -18517,11 +18543,27 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -18539,7 +18581,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18572,16 +18614,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18615,7 +18649,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18648,12 +18682,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18686,11 +18718,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18726,7 +18763,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18759,14 +18797,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18836,10 +18868,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18872,6 +18904,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -18909,6 +18945,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18943,6 +18981,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18977,12 +19017,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: @@ -19018,6 +19052,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19052,12 +19092,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19092,10 +19126,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19128,8 +19160,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19162,18 +19204,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19206,15 +19244,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19242,35 +19277,22 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -19279,17 +19301,9 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -19303,6 +19317,24 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { @@ -19354,12 +19386,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19392,8 +19430,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19426,19 +19469,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19506,9 +19542,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19542,7 +19576,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19576,7 +19612,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19709,134 +19745,133 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -make[4]: Entering 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&& /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o 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6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -[ 7%] Generating ../generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_random.cpp +[ 5%] Generating ../generated/blosum62.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp -[ 7%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h -[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp -[ 7%] Generating ../generated/blosum62.out.h +[ 6%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h -[ 8%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h -[ 8%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +[ 7%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h -[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 10%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +[ 10%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -19855,7 +19890,6 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 367 | ret->value = s->value; | ^~ @@ -19873,131 +19907,133 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 11%] Generating ../generated/Library255_may17.lib.h +[ 10%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -[ 12%] Generating ../generated/libPolished_8.lib.h +[ 10%] Built target microtar +[ 10%] Generating ../generated/libPolished_8.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h -[ 12%] Generating ../generated/cs219.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h +[ 11%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h -[ 13%] Generating ../generated/krona_prelude.html.h +[ 12%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h [ 14%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -[ 14%] Generating ../generated/K4000.crf.h +[ 15%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 15%] Built target tinyexpr +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +[ 15%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -[ 14%] Generating ../generated/easysearch.sh.h +[ 15%] Built target cacode +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +[ 15%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h -[ 14%] Generating ../generated/easycluster.sh.h -[ 15%] Linking C static library libtinyexpr.a +[ 15%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -[ 15%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h -[ 16%] Generating ../generated/easytaxonomy.sh.h +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp +[ 15%] Built target ksw2 +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h +[ 17%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 17%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +[ 19%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp -[ 18%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h +[ 20%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h -[ 18%] Built target tinyexpr -[ 18%] Generating ../generated/blastpgp.sh.h +[ 20%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -[ 19%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h +[ 20%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +[ 21%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h -[ 20%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h -[ 20%] Generating ../generated/clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h -[ 20%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -[ 22%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h @@ -20005,98 +20041,98 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h +[ 24%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h -[ 24%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -[ 25%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 25%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated [ 25%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h [ 25%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp [ 26%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h [ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp [ 27%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -[ 27%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h +[ 27%] Generating ../generated/enrich.sh.h [ 27%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp [ 27%] Generating ../generated/linsearch.sh.h +[ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h -[ 28%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h [ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h [ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp @@ -20108,9 +20144,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -[ 28%] Built target alp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' [ 28%] Built target generated +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake "--color=" @@ -20118,35 +20154,31 @@ make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp -[ 31%] Building CXX object 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20181,9 +20213,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20204,14 +20236,6 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -20219,15 +20243,20 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -20255,9 +20284,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20292,9 +20321,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20328,7 +20358,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20362,7 +20396,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20397,10 +20435,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20435,10 +20472,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20473,8 +20508,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20545,8 +20581,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: @@ -20582,17 +20616,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20625,11 +20657,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20662,14 +20700,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20705,8 +20742,7 @@ [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20739,13 +20775,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20778,6 +20810,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o @@ -20785,7 +20821,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20823,7 +20859,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20856,13 +20893,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20895,6 +20929,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/HeaderSummarizer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -20975,8 +21011,13 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: +[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21009,9 +21050,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21044,16 +21084,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -21093,7 +21127,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21126,13 +21163,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21165,11 +21197,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21202,12 +21237,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21240,8 +21276,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -21279,23 +21313,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -21333,8 +21350,25 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: @@ -21370,6 +21404,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -21395,7 +21431,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -21409,6 +21444,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp @@ -21418,9 +21454,16 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21453,18 +21496,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21532,6 +21566,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -21570,8 +21608,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o @@ -21615,6 +21651,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, @@ -21651,10 +21689,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -21693,10 +21727,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21729,11 +21766,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21767,7 +21801,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21800,8 +21834,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -21839,12 +21877,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -21879,8 +21911,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -21915,10 +21953,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21951,8 +21989,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21986,8 +22026,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22020,12 +22059,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22060,8 +22096,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22130,6 +22164,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22200,14 +22236,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22242,12 +22270,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22264,6 +22300,7 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -22280,13 +22317,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22319,13 +22357,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22359,7 +22394,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22392,11 +22428,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22429,12 +22462,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22467,10 +22501,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22503,9 +22536,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22613,6 +22649,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22647,10 +22685,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22685,6 +22719,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22719,14 +22757,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22761,10 +22791,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22905,6 +22939,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -22941,8 +22979,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -23055,9 +23091,7 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, @@ -23096,7 +23130,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23129,8 +23163,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23164,7 +23200,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23203,10 +23239,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23239,10 +23273,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23275,13 +23312,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23314,8 +23346,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -23350,8 +23382,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23384,13 +23418,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23398,7 +23434,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -23408,13 +23443,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -23431,6 +23459,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { @@ -23452,17 +23493,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: @@ -23498,8 +23528,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -23535,7 +23567,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23568,10 +23602,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23604,6 +23642,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -23642,18 +23684,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23689,7 +23725,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23722,6 +23758,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -23758,10 +23796,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -23799,10 +23833,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23835,10 +23871,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23871,17 +23911,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23914,13 +23953,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23987,8 +24021,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24057,6 +24091,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24093,10 +24129,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24131,12 +24163,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24171,10 +24201,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24208,7 +24242,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24243,8 +24279,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24279,10 +24317,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24319,8 +24355,14 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24353,16 +24395,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24430,6 +24464,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24466,8 +24502,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: @@ -24503,6 +24537,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o @@ -24544,7 +24580,10 @@ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24578,10 +24617,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24688,10 +24724,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24726,6 +24758,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o @@ -24800,8 +24836,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24835,7 +24873,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24868,10 +24906,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24944,10 +24980,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25022,10 +25058,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25059,7 +25092,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25093,7 +25126,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25165,8 +25201,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25201,10 +25235,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25239,13 +25273,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -25275,11 +25314,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25315,7 +25349,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25348,8 +25382,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25382,16 +25422,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25426,11 +25458,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25463,12 +25498,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25502,8 +25538,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25538,12 +25577,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25577,7 +25614,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25610,16 +25648,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25652,17 +25682,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25695,8 +25718,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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+cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25730,7 +25766,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25764,9 +25802,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25800,7 +25836,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25970,132 +26006,98 @@ make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f 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CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_random.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML80.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h -[ 5%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h +[ 5%] Generating ../generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 5%] Generating ../generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp -[ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 9%] Linking C static library libmicrotar.a -[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ @@ -26130,275 +26132,309 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 10%] Generating ../generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h +[ 8%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h +[ 8%] Linking C static library libmicrotar.a +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp -[ 10%] Generating ../generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Built target version +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 11%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 11%] Built target cacode +[ 11%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +[ 12%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h +[ 12%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h +[ 13%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h -[ 11%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h -[ 12%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 14%] Generating ../generated/krona_prelude.html.h +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +[ 15%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h -[ 13%] Generating ../generated/result_viz_prelude.html.zst.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h -[ 14%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h -[ 14%] Generating ../generated/K4000.crf.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +[ 16%] Built target tinyexpr +[ 16%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 15%] Built target tinyexpr -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 15%] Built target cacode -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 16%] Built target ksw2 +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h [ 16%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +[ 17%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -[ 18%] Generating ../generated/easytaxonomy.sh.h -[ 19%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h -[ 20%] Generating ../generated/blastp.sh.h +[ 19%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 20%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h +[ 19%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h +[ 19%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h -[ 20%] Generating ../generated/rbh.sh.h -[ 20%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp +[ 19%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h [ 21%] Generating ../generated/linclust.sh.h -[ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h -[ 22%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +[ 21%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 23%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h +[ 23%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h [ 24%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h [ 25%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h [ 25%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp [ 25%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h [ 26%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h [ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp [ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp [ 27%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h [ 27%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h [ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh [ 27%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp [ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp [ 28%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h [ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 28%] Built target generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' [ 28%] Built target alp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 28%] Built target generated make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o 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CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -26436,9 +26472,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26472,11 +26507,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26511,9 +26542,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26548,9 +26579,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26585,18 +26617,14 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -26608,8 +26636,33 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -26633,30 +26686,16 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26692,9 +26731,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26714,6 +26752,19 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -26724,7 +26775,6 @@ 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -26737,10 +26787,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -26757,19 +26803,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26803,9 +26840,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26840,10 +26876,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -26852,7 +26884,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -26882,13 +26913,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -26926,8 +26960,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26940,10 +26977,17 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -26960,15 +27004,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -26998,8 +27033,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27011,6 +27045,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { @@ -27019,8 +27054,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -27034,10 +27067,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -27074,8 +27114,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -27112,8 +27150,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -27155,8 +27191,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/HeaderSummarizer.cpp -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: @@ -27192,6 +27226,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryMapped.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: @@ -27227,16 +27265,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -27271,10 +27305,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -27308,13 +27340,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27347,14 +27384,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27421,6 +27455,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o @@ -27463,8 +27499,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: @@ -27500,6 +27534,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -27537,31 +27579,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27594,13 +27615,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27633,13 +27656,35 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27672,14 +27717,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27712,19 +27754,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27757,11 +27789,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27794,17 +27827,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -27834,8 +27865,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -27873,12 +27907,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27911,10 +27945,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27947,17 +27987,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27991,7 +28024,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28024,6 +28058,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -28060,6 +28096,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -28068,7 +28110,17 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -28081,6 +28133,14 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28097,24 +28157,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28131,10 +28173,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -28169,16 +28207,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd 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object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -28247,8 +28279,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28281,9 +28316,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28370,7 +28406,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28387,6 +28422,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: @@ -28402,6 +28438,24 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ @@ -28422,24 +28476,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28458,8 +28494,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -28494,19 +28528,28 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -28536,8 +28579,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -28576,13 +28617,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28651,12 +28687,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28690,7 +28721,12 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28944,9 +28980,13 @@ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -28981,14 +29021,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29022,7 +29056,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29056,7 +29090,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29089,11 +29123,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29126,11 +29160,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29163,10 +29197,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29199,12 +29235,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29237,14 +29271,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29278,7 +29312,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29311,10 +29347,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -29351,10 +29383,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29387,8 +29419,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29421,6 +29455,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29455,12 +29497,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29495,10 +29531,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29570,8 +29602,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29606,10 +29640,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29644,6 +29679,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29678,6 +29719,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29713,8 +29756,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29747,15 +29789,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29788,10 +29824,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -29828,12 +29860,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29846,6 +29881,7 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ @@ -29866,8 +29902,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29900,16 +29942,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29942,12 +29980,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29980,8 +30016,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -30055,6 +30089,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -30091,14 +30131,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -30106,8 +30144,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -30137,8 +30173,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -30174,7 +30208,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30207,12 +30245,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30246,7 +30282,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30280,7 +30316,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30353,6 +30389,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -30387,8 +30425,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -30423,8 +30461,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -30461,8 +30497,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -30499,10 +30533,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30539,10 +30577,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30577,12 +30613,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30615,10 +30649,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30724,8 +30760,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: @@ -30761,12 +30795,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30799,6 +30833,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -30836,8 +30872,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30870,12 +30908,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30908,8 +30942,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30942,22 +30980,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated 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src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30991,7 +31023,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31008,24 +31040,8 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31045,6 +31061,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -31054,12 +31074,26 @@ 100 | SeqProf(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31092,6 +31126,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31202,6 +31238,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31236,10 +31276,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -31278,7 +31314,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31311,11 +31350,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31348,10 +31386,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31386,14 +31420,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: @@ -31429,8 +31461,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31465,8 +31495,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31499,10 +31533,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31535,11 +31568,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31573,7 +31609,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31606,12 +31642,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31644,6 +31676,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31678,8 +31718,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -31718,15 +31756,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31759,10 +31795,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -31801,9 +31833,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31836,11 +31869,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31864,7 +31895,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { @@ -31874,9 +31904,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31909,8 +31947,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31946,9 +31987,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31982,9 +32022,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32017,14 +32055,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32058,7 +32094,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32340,12 +32376,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2861941/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/458034 and its subdirectories -I: Current time: Wed Apr 22 20:38:46 -12 2026 -I: pbuilder-time-stamp: 1776933526 +I: removing directory /srv/workspace/pbuilder/2861941 and its subdirectories +I: Current time: Fri Mar 21 16:21:24 +14 2025 +I: pbuilder-time-stamp: 1742523684