Diff of the two buildlogs: -- --- b1/build.log 2025-02-13 18:21:01.572126402 +0000 +++ b2/build.log 2025-02-13 18:22:27.376232353 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 13 06:17:28 -12 2025 -I: pbuilder-time-stamp: 1739470648 +I: Current time: Thu Mar 19 14:44:03 +14 2026 +I: pbuilder-time-stamp: 1773881043 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking packmol_20.15.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1122645/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 19 00:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7099ebd26a444133b80503a6e309bbf6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1122645' - PS1='# ' - PS2='> ' + INVOCATION_ID=8ef8e6a5f6a74f05a3c3b41c609cf8f0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3962485 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O7jU2aHu/pbuilderrc_apMS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O7jU2aHu/b1 --logfile b1/build.log packmol_20.15.3-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O7jU2aHu/pbuilderrc_9jIT --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O7jU2aHu/b2 --logfile b2/build.log packmol_20.15.3-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1122645/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -172,7 +204,7 @@ Get: 63 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-17 [14.0 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] -Fetched 54.0 MB in 3s (18.0 MB/s) +Fetched 54.0 MB in 2s (31.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19808 files and directories currently installed.) @@ -454,7 +486,11 @@ fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/packmol-20.15.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_20.15.3-1_source.changes +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/packmol-20.15.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../packmol_20.15.3-1_source.changes dpkg-buildpackage: info: source package packmol dpkg-buildpackage: info: source version 1:20.15.3-1 dpkg-buildpackage: info: source distribution unstable @@ -485,8 +521,8 @@ -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped --- Configuring done (3.4s) --- Generating done (0.2s) +-- Configuring done (0.9s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -502,7 +538,7 @@ -- Build files have been written to: /build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-20.15.3 -B/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -517,42 +553,100 @@ make[3]: Leaving directory '/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu' make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build make[3]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu' -[ 2%] Building Fortran object CMakeFiles/packmol.dir/src/ahestetic.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/ahestetic.f90 -o CMakeFiles/packmol.dir/src/ahestetic.f90.o -[ 4%] Building Fortran object CMakeFiles/packmol.dir/src/sizes.f90.o -[ 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-fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/writesuccess.f90 -o CMakeFiles/packmol.dir/src/writesuccess.f90.o +[ 92%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/computeg.f90 -o CMakeFiles/packmol.dir/src/computeg.f90.o +[ 90%] Building Fortran object CMakeFiles/packmol.dir/src/heuristics.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/heuristics.f90 -o CMakeFiles/packmol.dir/src/heuristics.f90.o /build/reproducible-path/packmol-20.15.3/src/gencan.f:62:37: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) @@ -578,13 +672,11 @@ 2571 | 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CMakeFiles/packmol.dir/src/pbc.f90.o.provides.build +[ 95%] Building Fortran object CMakeFiles/packmol.dir/src/swaptype.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/swaptype.f90 -o CMakeFiles/packmol.dir/src/swaptype.f90.o +[ 97%] Building Fortran object CMakeFiles/packmol.dir/src/computef.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/computef.f90 -o CMakeFiles/packmol.dir/src/computef.f90.o /build/reproducible-path/packmol-20.15.3/src/gencan.f:4:36: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) @@ -611,7 +706,6 @@ 2967 | +epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] -/usr/bin/f95 -g -O2 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-/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/pgencan.f90 -o CMakeFiles/packmol.dir/src/pgencan.f90.o -[ 82%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o -[ 85%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/initial.f90 -o CMakeFiles/packmol.dir/src/initial.f90.o -[ 87%] Building Fortran object CMakeFiles/packmol.dir/src/strlength.f90.o -[ 90%] Building Fortran object CMakeFiles/packmol.dir/src/output.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/strlength.f90 -o CMakeFiles/packmol.dir/src/strlength.f90.o -[ 92%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/getinp.f90 -o CMakeFiles/packmol.dir/src/getinp.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/output.f90 -o CMakeFiles/packmol.dir/src/output.f90.o -[ 95%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o -[ 97%] Building Fortran object CMakeFiles/packmol.dir/src/writesuccess.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.15.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-20.15.3/src/writesuccess.f90 -o CMakeFiles/packmol.dir/src/writesuccess.f90.o -/build/reproducible-path/packmol-20.15.3/app/packmol.f90:347:44: - - 347 | iratom(icart,iratcount) = iirest - | ^ -Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized] -/build/reproducible-path/packmol-20.15.3/app/packmol.f90:51:42: - - 51 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival - | ^ -note: 'iirest' was declared here /build/reproducible-path/packmol-20.15.3/src/getinp.f90:1005:15: 1005 | if(ires.ne.ireslast) then @@ -725,6 +751,16 @@ 990 | integer :: iread, ires, ireslast, nres, ioerr | ^ note: 'ireslast' was declared here +/build/reproducible-path/packmol-20.15.3/app/packmol.f90:347:44: + + 347 | iratom(icart,iratcount) = iirest + | ^ +Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized] +/build/reproducible-path/packmol-20.15.3/app/packmol.f90:51:42: + + 51 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival + | ^ +note: 'iirest' was declared here /build/reproducible-path/packmol-20.15.3/src/output.f90:573:36: 573 | nres = ilres - ifres + 1 @@ -858,7 +894,7 @@ dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/packmol/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/packmol-20.15.3/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/packmol-20.15.3/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-20.15.3 -B/build/reproducible-path/packmol-20.15.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -890,8 +926,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_20.15.3-1_amd64.deb'. dpkg-deb: building package 'packmol' in '../packmol_20.15.3-1_amd64.deb'. +dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_20.15.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../packmol_20.15.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../packmol_20.15.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -899,12 +935,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3962485/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1122645 and its subdirectories -I: Current time: Thu Feb 13 06:21:00 -12 2025 -I: pbuilder-time-stamp: 1739470860 +I: removing directory /srv/workspace/pbuilder/3962485 and its subdirectories +I: Current time: Thu Mar 19 14:45:26 +14 2026 +I: pbuilder-time-stamp: 1773881126