Diff of the two buildlogs: -- --- b1/build.log 2025-03-21 14:00:37.590483273 +0000 +++ b2/build.log 2025-03-21 14:03:06.595797249 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 21 01:51:48 -12 2025 -I: pbuilder-time-stamp: 1742565108 +I: Current time: Fri Apr 24 10:23:41 +14 2026 +I: pbuilder-time-stamp: 1776975821 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/883593/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 23 20:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7fb9bab688204b9a9bf06b13b7006c8b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='883593' - PS1='# ' - PS2='> ' + INVOCATION_ID=90ff9ba8e0c64bd986c010b31cf091a7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=187545 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9Pneib3w/pbuilderrc_rXgd --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9Pneib3w/b1 --logfile b1/build.log pftools_3.2.12-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9Pneib3w/pbuilderrc_3pMv --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9Pneib3w/b2 --logfile b2/build.log pftools_3.2.12-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/883593/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +232,7 @@ Get: 76 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-6 [153 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 57.8 MB in 3s (21.2 MB/s) +Fetched 57.8 MB in 4s (13.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) @@ -533,7 +565,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pftools-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pftools_3.2.12-1_source.changes +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pftools-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pftools_3.2.12-1_source.changes dpkg-buildpackage: info: source package pftools dpkg-buildpackage: info: source version 3.2.12-1 dpkg-buildpackage: info: source distribution unstable @@ -655,8 +691,8 @@ -- -- Link with pcre2 ................. : ON -- --- Configuring done (13.9s) --- Generating done (0.2s) +-- Configuring done (2.4s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -672,348 +708,335 @@ -- Build files have been written to: /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/pftools-3.2.12' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pftools-3.2.12 -B/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/depend +make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend +make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake "--color=" -make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend +make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake "--color=" -make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend +make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend +make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C/sse2 /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake "--color=" -make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend +make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C/sse41 /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake "--color=" -make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend +make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 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'/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake "--color=" -[ 4%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o -MF CMakeFiles/SSE41.dir/heuristic_sse41.c.o.d -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/heuristic_sse41.c -make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 5%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -MF CMakeFiles/OUTPUT_FORMAT.dir/output.c.o.d -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/output.c -[ 7%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o -MF CMakeFiles/SSE41.dir/xali1_sse41.c.o.d -o CMakeFiles/SSE41.dir/xali1_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/xali1_sse41.c -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -MF CMakeFiles/SSE41.dir/xalit_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/xalit_sse41.c -[ 8%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake "--color=" -make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake "--color=" -[ 10%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o -MF CMakeFiles/SSE41.dir/xalip_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/xalip_sse41.c -[ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -[ 13%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -MF CMakeFiles/SSE2.dir/heuristic_sse2.c.o.d -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/heuristic_sse2.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -MF CMakeFiles/SSE2.dir/xali1_sse2.c.o.d -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/xali1_sse2.c -make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend -[ 14%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -MF CMakeFiles/PROFILES.dir/profile.c.o.d -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/profile.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o -MF CMakeFiles/SSE2.dir/xalip_sse2.c.o.d -o CMakeFiles/SSE2.dir/xalip_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/xalip_sse2.c -[ 16%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -[ 17%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o -[ 19%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o -[ 20%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/io.c.o -MF CMakeFiles/PROFILES.dir/io.c.o.d -o CMakeFiles/PROFILES.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/io.c -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o -MF CMakeFiles/SYSTEM.dir/system.c.o.d -o CMakeFiles/SYSTEM.dir/system.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/system.c -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -MF CMakeFiles/PROFILES.dir/Normalization.c.o.d -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/Normalization.c -[ 22%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake "--color=" +make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran 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Scanning dependencies of target quantile -make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/quantile.dir/build.make 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"/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build +make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' Scanning dependencies of target gtop make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 23%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -MF CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o.d -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/pam.c -[ 25%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -[ 26%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -MF CMakeFiles/pfpam.dir/utils/pam.c.o.d -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/pam.c -[ 28%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -c /build/reproducible-path/pftools-3.2.12/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o -[ 29%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfsplit.dir/prg/split.c.o -MF CMakeFiles/pfsplit.dir/prg/split.c.o.d -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/prg/split.c -[ 31%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/gtop.dir/io.c.o -MF CMakeFiles/gtop.dir/io.c.o.d -o CMakeFiles/gtop.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/Fortran/io.c -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c: In function 'InitRegExFromString': -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:88:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] - 88 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\n", erroffset, error); - | ~^ ~~~~~~~~~ - | | | - | int size_t {aka long unsigned int} - | %ld -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:88:62: warning: format '%s' expects argument of type 'char *', but argument 4 has type 'int' [-Wformat=] - 88 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\n", erroffset, error); - | ~^ ~~~~~ - | | | - | char * int - | %d -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c: In function 'InitRegExFromProfile': -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:173:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] - 173 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\nProfile ID: %s\npattern: %s\n", erroffset, error, - | ~^ ~~~~~~~~~ - | | | - | int size_t {aka long unsigned int} - | %ld -/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:173:62: warning: format '%s' expects argument of type 'char *', but argument 4 has type 'int' [-Wformat=] - 173 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\nProfile ID: %s\npattern: %s\n", erroffset, error, - | ~^ ~~~~~ - | | | - | char * int - | %d -[ 32%] Linking C executable pfsplit -make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 -make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend +make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/build +Scanning dependencies of target htop +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". +make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran 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src/C/CMakeFiles/pfpam.dir/utils/io.c.o -MF CMakeFiles/pfpam.dir/utils/io.c.o.d -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/io.c +Scanning dependencies of target ptoh +Scanning dependencies of target 6ft make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake "--color=" -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". -Scanning dependencies of target htop -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build -Scanning dependencies of target ptoh -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build -Scanning dependencies of target ptof make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 35%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o -[ 37%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfsplit.dir/link.d CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 38%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o -[ 38%] Built target pfsplit -make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/depend +make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". +make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake "--color=" -[ 40%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o -make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend -rhmmer2.f:265:17: - -Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) -rhmmer2.f:265:29: - -Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) -rhmmer2.f:274:17: - -Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) -rhmmer2.f:274:29: - -Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/random.c.o -MF CMakeFiles/pfpam.dir/utils/random.c.o.d -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/random.c +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake "--color=" -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". -Scanning dependencies of target pfw +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build +Scanning dependencies of target ptof +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". +make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +Scanning dependencies of target pfscale +make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build +make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build Scanning dependencies of target 2ft +make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". +Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". +Scanning dependencies of target pfscan +Scanning dependencies of target pfw +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 41%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/pfw.dir/io.c.o -MF CMakeFiles/pfw.dir/io.c.o.d -o CMakeFiles/pfw.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/Fortran/io.c -[ 43%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o -make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend +Scanning dependencies of target pfmake +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake "--color=" -[ 44%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o -make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake "--color=" -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". -make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend -Scanning dependencies of target 6ft -[ 44%] Built target SEQUENCES_EXTRA -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake "--color=" -make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake "--color=" -make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -Scanning dependencies of target psa2msa +make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build +make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build -[ 44%] Built target REGEXP -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend +make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build +make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake "--color=" -[ 46%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -MF CMakeFiles/psa2msa.dir/io.c.o.d -o CMakeFiles/psa2msa.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/Fortran/io.c -[ 47%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". -Scanning dependencies of target pfscale -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -Scanning dependencies of target pfmake -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build -Scanning dependencies of target pfscan +Scanning dependencies of target psa2msa make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build -[ 49%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o -[ 50%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o -[ 52%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o -[ 52%] Built target SEQUENCES -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake "--color=" -[ 53%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". -Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build Scanning dependencies of target pfsearch +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build +[ 1%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o +[ 2%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 55%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/io.c.o -MF CMakeFiles/pfpam.dir/utils/io.c.o.d -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/io.c +[ 4%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o +[ 8%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o +[ 8%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o +[ 8%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o +[ 11%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o -MF CMakeFiles/SSE41.dir/heuristic_sse41.c.o.d -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/heuristic_sse41.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -MF CMakeFiles/SSE2.dir/xali1_sse2.c.o.d -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/xali1_sse2.c +[ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o +[ 13%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o +[ 14%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -MF CMakeFiles/SSE2.dir/heuristic_sse2.c.o.d -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/heuristic_sse2.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o -MF CMakeFiles/SSE41.dir/xali1_sse41.c.o.d -o 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/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/gtop.dir/io.c.o -MF CMakeFiles/gtop.dir/io.c.o.d -o CMakeFiles/gtop.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/Fortran/io.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o -MF CMakeFiles/SSE2.dir/xalip_sse2.c.o.d -o CMakeFiles/SSE2.dir/xalip_sse2.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse2/xalip_sse2.c +[ 19%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o -MF CMakeFiles/SSE41.dir/xalip_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/xalip_sse41.c +[ 19%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o +[ 20%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o -MF CMakeFiles/SYSTEM.dir/system.c.o.d -o CMakeFiles/SYSTEM.dir/system.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/system.c +[ 22%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o +[ 23%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o +cd 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/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -MF CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o.d -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/pam.c +[ 26%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -MF CMakeFiles/SSE41.dir/xalit_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/sse41/xalit_sse41.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I 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src/Fortran/CMakeFiles/psa2msa.dir/io.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -MF CMakeFiles/psa2msa.dir/io.c.o.d -o CMakeFiles/psa2msa.dir/io.c.o -c /build/reproducible-path/pftools-3.2.12/src/Fortran/io.c +[ 53%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/reproducible-path/pftools-3.2.12/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o +[ 55%] Linking C executable pfsplit +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 +rhmmer2.f:265:17: + +Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) +rhmmer2.f:265:29: + +Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c: In function 'InitRegExFromString': +rhmmer2.f:274:17: + +Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +rhmmer2.f:274:29: + +Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:88:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] + 88 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\n", erroffset, error); + | ~^ ~~~~~~~~~ + | | | + | int size_t {aka long unsigned int} + | %ld +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:88:62: warning: format '%s' expects argument of type 'char *', but argument 4 has type 'int' [-Wformat=] + 88 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\n", erroffset, error); + | ~^ ~~~~~ + | | | + | char * int + | %d +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c: In function 'InitRegExFromProfile': +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:173:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] + 173 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\nProfile ID: %s\npattern: %s\n", erroffset, error, + | ~^ ~~~~~~~~~ + | | | + | int size_t {aka long unsigned int} + | %ld +/build/reproducible-path/pftools-3.2.12/src/C/utils/pfregexp.c:173:62: warning: format '%s' expects argument of type 'char *', but argument 4 has type 'int' [-Wformat=] + 173 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\nProfile ID: %s\npattern: %s\n", erroffset, error, + | ~^ ~~~~~ + | | | + | char * int + | %d +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfsplit.dir/link.d CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 55%] Built target pfsplit make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 55%] Built target SEQUENCES_EXTRA +[ 56%] Linking Fortran executable 2ft +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 56%] Built target SEQUENCES make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake "--color=" -[ 55%] Built target quantile make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/build +[ 56%] Built target REGEXP +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake "--color=" +[ 58%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection 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/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake "--color=" -[ 58%] Linking Fortran executable 2ft -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 -[ 58%] Built target SYSTEM -[ 59%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o +[ 59%] Built target 2ft make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I 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/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o -MF CMakeFiles/CALIBRATION.dir/histogram.c.o.d -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/histogram.c -[ 64%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -MF CMakeFiles/CALIBRATION.dir/quantileregression.c.o.d -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/quantileregression.c +[ 61%] Linking Fortran executable 6ft +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 +[ 61%] Built target SSE2 /build/reproducible-path/pftools-3.2.12/src/C/prg/pfindex.c: In function 'Usage': /build/reproducible-path/pftools-3.2.12/src/C/prg/pfindex.c:84:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); @@ -1021,101 +1044,92 @@ /build/reproducible-path/pftools-3.2.12/src/C/prg/pfindex.c:84:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/2ft.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/2ft.dir/2ft.f.o -o 2ft +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/6ft.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/6ft.dir/6ft.f.o -o 6ft make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 64%] Built target 2ft -[ 65%] Linking Fortran executable psa2msa +[ 62%] Linking Fortran executable psa2msa cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 -[ 67%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -MF CMakeFiles/CALIBRATION.dir/generatesequences.c.o.d -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/generatesequences.c -[ 68%] Linking C executable pfindex +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 62%] Built target 6ft +[ 62%] Built target quantile +make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 64%] Linking C executable pfindex cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfindex.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfindex.dir/link.d CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 64%] Built target SSE41 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/psa2msa.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 68%] Built target pfindex -[ 68%] Built target psa2msa +[ 65%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o +[ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o +[ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o +[ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o -MF CMakeFiles/CALIBRATION.dir/random.c.o.d -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/random.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -MF CMakeFiles/CALIBRATION.dir/quantileregression.c.o.d -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/quantileregression.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o -MF CMakeFiles/CALIBRATION.dir/histogram.c.o.d -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/histogram.c +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -MF CMakeFiles/CALIBRATION.dir/generatesequences.c.o.d -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/generatesequences.c +[ 70%] Built target psa2msa +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfindex.dir/link.d CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 68%] Built target SSE41 -[ 70%] Linking Fortran executable 6ft -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/6ft.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/6ft.dir/6ft.f.o -o 6ft +[ 70%] Built target pfindex make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 70%] Built target SYSTEM [ 71%] Linking Fortran executable pfw cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 -[ 71%] Built target 6ft /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfw.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' [ 71%] Built target pfw +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 71%] Built target OUTPUT_FORMAT +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 71%] Built target CALIBRATION [ 73%] Linking C executable pfpam cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 73%] Built target CALIBRATION /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfpam.dir/link.d CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' [ 73%] Built target pfpam -[ 74%] Linking C executable pfdump -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfdump.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 74%] Built target PROFILES +[ 73%] Built target PROFILES make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/depend +make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend +make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend +make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake "--color=" -make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake "--color=" -make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake "--color=" -make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pftools-3.2.12 /build/reproducible-path/pftools-3.2.12/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake "--color=" -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfdump.dir/link.d CMakeFiles/pfdump.dir/utils/io.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -o pfdump /usr/lib/x86_64-linux-gnu/libpcre2-8.so -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Dependee "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Scanning dependencies of target pfcalibrateV3 make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build -[ 74%] Built target pfdump -make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build +make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 76%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 79%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o +[ 79%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o +[ 79%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o +[ 79%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o +[ 80%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -MF CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o.d -o CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c -[ 77%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -MF CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o.d -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c -[ 79%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o -MF CMakeFiles/pfemit.dir/utils/generatesequences.c.o.d -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/generatesequences.c -[ 80%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o -cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/random.c.o -MF CMakeFiles/pfemit.dir/utils/random.c.o.d -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/random.c -[ 82%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -MF CMakeFiles/pfscanV3.dir/prg/pfscan.c.o.d -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/prg/pfscan.c -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'Usage': -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:191:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); - | ^~~~~~~~ -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:191:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); - | ^~~~~~~~ -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'main': -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:494:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 494 | fputs(HEADER - | ^~~~~~ -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:33:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 33 | "| Built on " __DATE__ " at " __TIME__ ". |\n" - | ^~~~~~~~ -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:494:23: note: in expansion of macro 'HEADER' - 494 | fputs(HEADER - | ^~~~~~ +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/reproducible-path/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/random.c.o -MF CMakeFiles/pfemit.dir/utils/random.c.o.d -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/reproducible-path/pftools-3.2.12/src/C/utils/random.c /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c: In function 'Usage': /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c:287:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", @@ -1127,13 +1141,13 @@ /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c:963:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 963 | fputs(HEADER | ^~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfscan.c: In function 'Usage': /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c:49:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 49 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/reproducible-path/pftools-3.2.12/src/C/prg/pfcalibrate.c:963:23: note: in expansion of macro 'HEADER' 963 | fputs(HEADER | ^~~~~~ -/build/reproducible-path/pftools-3.2.12/src/C/prg/pfscan.c: In function 'Usage': /build/reproducible-path/pftools-3.2.12/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ @@ -1150,57 +1164,79 @@ /build/reproducible-path/pftools-3.2.12/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' 368 | fputs(HEADER | ^~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'Usage': +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:191:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); + | ^~~~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:191:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); + | ^~~~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'main': +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:494:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 494 | fputs(HEADER + | ^~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:33:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 33 | "| Built on " __DATE__ " at " __TIME__ ". |\n" + | ^~~~~~~~ +/build/reproducible-path/pftools-3.2.12/src/C/prg/pfsearch.c:494:23: note: in expansion of macro 'HEADER' + 494 | fputs(HEADER + | ^~~~~~ +[ 83%] Linking Fortran executable ptoh [ 83%] Linking Fortran executable gtop cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 -[ 85%] Linking C executable pfemit -cd 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'/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 92%] Built target ptof +[ 94%] Linking C executable pfcalibrateV3 +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfcalibrateV3.dir/link.txt --verbose=1 /usr/bin/ld: CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o: in function `main': ./obj-x86_64-linux-gnu/src/C/./src/C/prg/pfcalibrate.c:1383:(.text.startup+0x174d): warning: the use of `tempnam' is dangerous, better use `mkstemp' -[ 95%] Built target ptof -[ 95%] Built target pfscale -[ 95%] Built target pfsearchV3 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfcalibrateV3.dir/link.d CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o utils/CMakeFiles/CALIBRATION.dir/random.c.o utils/CMakeFiles/CALIBRATION.dir/histogram.c.o utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o ../Fortran/CMakeFiles/quantile.dir/rq0.f.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfcalibrateV3 -lm -lgfortran -lm -lquadmath -lm make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 95%] Built target pfcalibrateV3 -[ 97%] Linking Fortran executable pfmake +[ 94%] Built target pfcalibrateV3 +[ 95%] Linking Fortran executable pfmake cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfmake.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfmake.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/pfmake.dir/pfmake.f.o -o pfmake make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 97%] Linking C executable pfsearchV3 +cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pftools-3.2.12=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -Wl,--dependency-file=CMakeFiles/pfsearchV3.dir/link.d CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre2-8.so -lm +make[3]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 97%] Built target pfsearchV3 [ 97%] Built target pfmake [ 98%] Linking Fortran executable pfsearch cd /build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearch.dir/link.txt --verbose=1 @@ -1512,7 +1548,7 @@ 1: $PFW -N 1000 sh3.msf | ${PFMAKE} -b -H 0.6 - $CMPDIR/blosum45.cmp 1: ID SEQUENCE_PROFILE; MATRIX. 1: AC ZZ99999; -1: DT Fri Mar 21 13:54:36 2025 +1: DT Thu Apr 23 20:24:22 2026 1: DE Generated from MSF file: 'stdin'. 1: MA /GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=62; 1: MA /DISJOINT: DEFINITION=PROTECT; N1=6; N2=57; @@ -2628,7 +2664,7 @@ 1: # S 1868 DLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNKL -18 1: # 1: -1/6 Test #1: execute_test_V2.sh .......................... Passed 1.35 sec +1/6 Test #1: execute_test_V2.sh .......................... Passed 0.36 sec test 2 Start 2: execute_test_V3.sh @@ -4849,14 +4885,14 @@ 2: KLEECSQRANnGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEA-MEKENLRLALDAMRD 2: LAQCVNEV 2: -2/6 Test #2: execute_test_V3.sh .......................... Passed 68.83 sec +2/6 Test #2: execute_test_V3.sh .......................... Passed 23.73 sec test 3 Start 3: check_output_of_test_V3.sh 3: Test command: /usr/bin/sh "-e" "test_V3_output.sh" 3: Working Directory: /build/reproducible-path/pftools-3.2.12/testing/examples/ 3: Test timeout computed to be: 1500 -3/6 Test #3: check_output_of_test_V3.sh .................. Passed 69.98 sec +3/6 Test #3: check_output_of_test_V3.sh .................. Passed 25.17 sec test 4 Start 4: execute_test_scan_search.pl @@ -6026,7 +6062,7 @@ 4: # test Ok : --sse2 -t 2 -i /tmp/test_scan_search/seq/all.idx  4: 4: # system : rm -Rf /tmp/test_scan_search -4/6 Test #4: execute_test_scan_search.pl ................. Passed 44.11 sec +4/6 Test #4: execute_test_scan_search.pl ................. Passed 4.56 sec test 5 Start 5: execute_test_pfsearchV3_iupac.pl @@ -6118,7 +6154,7 @@ 5: # Error : 0 5: # test : PASS 5: -5/6 Test #5: execute_test_pfsearchV3_iupac.pl ............ Passed 53.61 sec +5/6 Test #5: execute_test_pfsearchV3_iupac.pl ............ Passed 14.92 sec test 6 Start 6: execute_test_pfsearchV3_pattern-regexp.sh @@ -6240,11 +6276,11 @@ 6: # Cleaning 6: rm -Rf $TMPDIR 6: -6/6 Test #6: execute_test_pfsearchV3_pattern-regexp.sh ... Passed 1.88 sec +6/6 Test #6: execute_test_pfsearchV3_pattern-regexp.sh ... Passed 0.27 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 239.81 sec +Total Test time (real) = 69.01 sec make[2]: Leaving directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/pftools-3.2.12' create-stamp debian/debhelper-build-stamp @@ -6252,7 +6288,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pftools-3.2.12' dh_auto_install - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/pftools-3.2.12/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/pftools-3.2.12/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pftools-3.2.12 -B/build/reproducible-path/pftools-3.2.12/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -6325,53 +6361,53 @@ -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/data/familyProfile/sequence.seq -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/data/familyProfile/sh2.prf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/prosite13.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/rand_dna.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/coils.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.gpr -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.msf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/RF00177.msa --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/all.seq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V2.sh.cmake --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/standard.random --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/MYSA_HUMAN -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/ecp.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/Toolbox.pm --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/CVPBR322.embl --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/all.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh2.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3.out --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3.sh.cmake --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3_output.sh.cmake -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/undefined.hit --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/multiple_matches.hit +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/ambiguities_excluded.hit +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/anchorC.hit -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/anchorN.hit -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/repetition_range.hit -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/fully_defined.hit --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/ambiguities_excluded.hit -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/ambiguities.hit --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/anchorC.hit +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/multiple_matches.hit -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/repetition.hit --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_pfsearchV3_pattern-regexp.sh.cmake --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/VAV_HUMAN.seq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sample.fastq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_scan_search.pl.cmake --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/SRR9619541.sample.fastq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/patterns/undefined.hit +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/standard.random +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/R76849.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/all.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/CVPBR322.embl -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_pfsearchV3_iupac.pl.cmake --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/htop_issue.hmm --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/hiv.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.seq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/VAV_RAT.seq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/score.lis +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.prf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/PS00741_PS50010.dat +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sample.fastq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V2.sh.cmake -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/hiv.fastq --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/16S.prf --- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/R76849.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/all.prf +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/htop_issue.hmm +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/rand_dna.prf +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3.sh.cmake +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/coils.prf +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3_output.sh.cmake +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/MYSA_HUMAN +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/Toolbox.pm -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/rand_dna.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/RF00177.msa +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/VAV_RAT.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/hiv.prf +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_pfsearchV3_pattern-regexp.sh.cmake +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.gpr +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh2.prf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/pfam_sh3.hmm +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/VAV_HUMAN.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/score.lis +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_scan_search.pl.cmake +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/sh3.seq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/SRR9619541.sample.fastq +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/prosite13.prf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/GTPA_HUMAN.dat +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/test_V3.out +-- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/examples/16S.prf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/doc/profile.pdf -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/doc/profile.txt -- Installing: /build/reproducible-path/pftools-3.2.12/debian/pftools/usr/share/doc/posterPfsearchV3SIBdays2013_v0.3.pdf @@ -6420,17 +6456,17 @@ dh_fixperms dh_missing dh_dwz -a -dwz: dwz: debian/pftools/usr/bin/pfhtop: DWARF compression not beneficial - old size 40382 new size 40893debian/pftools/usr/bin/pfmake: DWARF compression not beneficial - old size 52082 new size 53215 - -dwz: debian/pftools/usr/bin/pfscan: DWARF compression not beneficial - old size 66026 new size 69361 +dwz: debian/pftools/usr/bin/pfhtop: DWARF compression not beneficial - old size 40382 new size 40893 dwz: debian/pftools/usr/bin/pfscale: DWARF compression not beneficial - old size 41838 new size 42344 -dwz: dwz: debian/pftools/usr/bin/ptoh: DWARF compression not beneficial - old size 35007 new size 35615 +dwz: debian/pftools/usr/bin/pfmake: DWARF compression not beneficial - old size 52082 new size 53215 +dwz: debian/pftools/usr/bin/pfscan: DWARF compression not beneficial - old size 66026 new size 69361 +dwz: debian/pftools/usr/bin/ptoh: DWARF compression not beneficial - old size 35007 new size 35615 dwz: debian/pftools/usr/bin/pfsearch: DWARF compression not beneficial - old size 68262 new size 71778 -debian/pftools/usr/bin/ptof: DWARF compression not beneficial - old size 40278 new size 40561 +dwz: debian/pftools/usr/bin/ptof: DWARF compression not beneficial - old size 40278 new size 40561 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pftools/usr/bin/pfmake debian/pftools/usr/bin/psa2msa debian/pftools/usr/bin/pfhtop debian/pftools/usr/bin/pfscale debian/pftools/usr/bin/pfw debian/pftools/usr/bin/ptoh debian/pftools/usr/bin/2ft debian/pftools/usr/bin/pfscan debian/pftools/usr/bin/6ft debian/pftools/usr/bin/pfsearch debian/pftools/usr/bin/ptof debian/pftools/usr/bin/pfgtop were not linked against libgcc_s.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pftools/usr/bin/pfw debian/pftools/usr/bin/pfgtop debian/pftools/usr/bin/pfsearch debian/pftools/usr/bin/psa2msa debian/pftools/usr/bin/ptof debian/pftools/usr/bin/6ft debian/pftools/usr/bin/pfhtop debian/pftools/usr/bin/pfmake debian/pftools/usr/bin/ptoh debian/pftools/usr/bin/pfscan debian/pftools/usr/bin/2ft debian/pftools/usr/bin/pfscale were not linked against libgcc_s.so.1 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined @@ -6446,12 +6482,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/187545/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/883593 and its subdirectories -I: Current time: Fri Mar 21 02:00:36 -12 2025 -I: pbuilder-time-stamp: 1742565636 +I: removing directory /srv/workspace/pbuilder/187545 and its subdirectories +I: Current time: Fri Apr 24 10:26:05 +14 2026 +I: pbuilder-time-stamp: 1776975965