Diff of the two buildlogs: -- --- b1/build.log 2025-03-04 07:00:01.782273671 +0000 +++ b2/build.log 2025-03-04 07:02:07.812573629 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Mar 3 18:58:49 -12 2025 -I: pbuilder-time-stamp: 1741071529 +I: Current time: Tue Apr 7 03:23:04 +14 2026 +I: pbuilder-time-stamp: 1775481784 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,51 +26,83 @@ dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2112439/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 6 13:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b40258a912944574b8f231401d067c34' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2112439' - PS1='# ' - PS2='> ' + INVOCATION_ID=e5dfef9f34004f13a58fa9c0854234ca + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2502055 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aHMJrDUn/pbuilderrc_ERJw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aHMJrDUn/b1 --logfile b1/build.log phylonium_1.7-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aHMJrDUn/pbuilderrc_yH2c --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aHMJrDUn/b2 --logfile b2/build.log phylonium_1.7-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2112439/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] -Fetched 20.6 MB in 0s (53.8 MB/s) +Fetched 20.6 MB in 1s (25.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) @@ -283,7 +315,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes dpkg-buildpackage: info: source package phylonium dpkg-buildpackage: info: source version 1.7-3 dpkg-buildpackage: info: source distribution unstable @@ -414,20 +450,20 @@ make[3]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' rm -f libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c +ar cr libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revseqcmp.o revseqcmp.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mssse3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librevseqcmp_ssse3_a-revseqcmp_ssse3.o `test -f 'revseqcmp_ssse3.c' || echo './'`revseqcmp_ssse3.c +ranlib libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librevseqcmp_avx2_a-revseqcmp_avx2.o `test -f 'revseqcmp_avx2.c' || echo './'`revseqcmp_avx2.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqcmp.o seqcmp.c -ar cr libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -msse2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_sse2_a-seqcmp_sse2.o `test -f 'seqcmp_sse2.c' || echo './'`seqcmp_sse2.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_avx2_a-seqcmp_avx2.o `test -f 'seqcmp_avx2.c' || echo './'`seqcmp_avx2.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx512bw -mavx512vl -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_avx512_a-seqcmp_avx512.o `test -f 'seqcmp_avx512.c' || echo './'`seqcmp_avx512.c -ranlib libcompat.a rm -f librevseqcmp_ssse3.a -rm -f libseqcmp_sse2.a ar cr librevseqcmp_ssse3.a librevseqcmp_ssse3_a-revseqcmp_ssse3.o -ar cr libseqcmp_sse2.a libseqcmp_sse2_a-seqcmp_sse2.o ranlib librevseqcmp_ssse3.a +rm -f libseqcmp_sse2.a +ar cr libseqcmp_sse2.a libseqcmp_sse2_a-seqcmp_sse2.o ranlib libseqcmp_sse2.a rm -f libpfasta.a ar cr libpfasta.a libpfasta_a-pfasta.o @@ -435,18 +471,18 @@ rm -f libseqcmp_avx512.a ar cr libseqcmp_avx512.a libseqcmp_avx512_a-seqcmp_avx512.o ranlib libseqcmp_avx512.a -rm -f libseqcmp_avx2.a -ar cr libseqcmp_avx2.a libseqcmp_avx2_a-seqcmp_avx2.o rm -f librevseqcmp_avx2.a ar cr librevseqcmp_avx2.a librevseqcmp_avx2_a-revseqcmp_avx2.o -ranlib libseqcmp_avx2.a +rm -f libseqcmp_avx2.a ranlib librevseqcmp_avx2.a +ar cr libseqcmp_avx2.a libseqcmp_avx2_a-seqcmp_avx2.o rm -f librevseqcmp.a +ar cr librevseqcmp.a revseqcmp.o librevseqcmp_ssse3.a librevseqcmp_avx2.a +ranlib libseqcmp_avx2.a +ranlib librevseqcmp.a rm -f libseqcmp.a ar cr libseqcmp.a seqcmp.o libseqcmp_sse2.a libseqcmp_avx2.a libseqcmp_avx512.a -ar cr librevseqcmp.a revseqcmp.o librevseqcmp_ssse3.a librevseqcmp_avx2.a ranlib libseqcmp.a -ranlib librevseqcmp.a make[3]: Leaving directory '/build/reproducible-path/phylonium-1.7/libs' Making all in src make[3]: Entering directory '/build/reproducible-path/phylonium-1.7/src' @@ -555,8 +591,8 @@ Making install in src make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/src' make[3]: Entering directory '/build/reproducible-path/phylonium-1.7/src' - /usr/bin/mkdir -p '/build/reproducible-path/phylonium-1.7/debian/phylonium/usr/bin' make[3]: Nothing to be done for 'install-data-am'. + /usr/bin/mkdir -p '/build/reproducible-path/phylonium-1.7/debian/phylonium/usr/bin' /usr/bin/install -c phylonium '/build/reproducible-path/phylonium-1.7/debian/phylonium/usr/bin' make[3]: Leaving directory '/build/reproducible-path/phylonium-1.7/src' make[2]: Leaving directory '/build/reproducible-path/phylonium-1.7/src' @@ -605,12 +641,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2502055/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2112439 and its subdirectories -I: Current time: Mon Mar 3 19:00:01 -12 2025 -I: pbuilder-time-stamp: 1741071601 +I: removing directory /srv/workspace/pbuilder/2502055 and its subdirectories +I: Current time: Tue Apr 7 03:25:07 +14 2026 +I: pbuilder-time-stamp: 1775481907