Diff of the two buildlogs: -- --- b1/build.log 2025-03-01 13:32:12.126990399 +0000 +++ b2/build.log 2025-03-01 13:33:47.914653931 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Mar 1 01:27:53 -12 2025 -I: pbuilder-time-stamp: 1740835673 +I: Current time: Sat Apr 4 09:55:14 +14 2026 +I: pbuilder-time-stamp: 1775246114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying typos.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/206551/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 3 19:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='72c873d16bdb42e4a0e291c9fba9ec89' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='206551' - PS1='# ' - PS2='> ' + INVOCATION_ID=03e1bae4b2e14d4a8759d8c84800624d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=270732 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3yYV4jwB/pbuilderrc_l044 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3yYV4jwB/b1 --logfile b1/build.log pirs_2.0.2+dfsg-12.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3yYV4jwB/pbuilderrc_7S8g --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3yYV4jwB/b2 --logfile b2/build.log pirs_2.0.2+dfsg-12.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/206551/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -151,7 +183,7 @@ Get: 33 http://deb.debian.org/debian unstable/main amd64 libgzstream0 amd64 1.5+git20171107.9a20658-3 [7032 B] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgzstream-dev amd64 1.5+git20171107.9a20658-3 [7332 B] Get: 35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 32.1 MB in 3s (12.7 MB/s) +Fetched 32.1 MB in 4s (7869 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19780 files and directories currently installed.) @@ -306,7 +338,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pirs-2.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pirs_2.0.2+dfsg-12_source.changes +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pirs-2.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pirs_2.0.2+dfsg-12_source.changes dpkg-buildpackage: info: source package pirs dpkg-buildpackage: info: source version 2.0.2+dfsg-12 dpkg-buildpackage: info: source distribution unstable @@ -401,7 +437,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg' dh_auto_build - cd src && make -j20 + cd src && make -j42 make[2]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg/src' make all-recursive make[3]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg/src' @@ -548,7 +584,7 @@ OutputStream.h:33:7: note: 'class OutputStream' declared here 33 | class OutputStream { | ^~~~~~~~~~~~ -In file included from Profile.cpp:2: +In file included from InputStream.cpp:1: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -563,7 +599,7 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from util.cpp:18: +In file included from Profile.cpp:2: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -578,9 +614,7 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from SimulationParameters.h:6, - from GCBiasProfile.h:5, - from GCBiasProfile.cpp:5: +In file included from util.cpp:18: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -595,22 +629,8 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from SimulationParameters.h:7: -OutputStream.h: In constructor 'OutputStream::OutputStream()': -OutputStream.h:54:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] - 54 | memset(this, 0, sizeof(*this)); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -OutputStream.h:33:7: note: 'class OutputStream' declared here - 33 | class OutputStream { - | ^~~~~~~~~~~~ -OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)': -OutputStream.h:58:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] - 58 | memset(this, 0, sizeof(*this)); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -OutputStream.h:33:7: note: 'class OutputStream' declared here - 33 | class OutputStream { - | ^~~~~~~~~~~~ -In file included from InputStream.cpp:1: +In file included from SimulationParameters.h:6, + from IndelProfile.cpp:2: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -625,7 +645,9 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from pirs_diploid.cpp:12: +In file included from SimulationParameters.h:6, + from GCBiasProfile.h:5, + from GCBiasProfile.cpp:5: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -640,7 +662,22 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from pirs_diploid.cpp:13: +In file included from SimulationParameters.h:7: +OutputStream.h: In constructor 'OutputStream::OutputStream()': +OutputStream.h:54:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] + 54 | memset(this, 0, sizeof(*this)); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +OutputStream.h:33:7: note: 'class OutputStream' declared here + 33 | class OutputStream { + | ^~~~~~~~~~~~ +OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)': +OutputStream.h:58:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] + 58 | memset(this, 0, sizeof(*this)); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +OutputStream.h:33:7: note: 'class OutputStream' declared here + 33 | class OutputStream { + | ^~~~~~~~~~~~ +In file included from SimulationParameters.h:7: OutputStream.h: In constructor 'OutputStream::OutputStream()': OutputStream.h:54:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); @@ -656,7 +693,8 @@ 33 | class OutputStream { | ^~~~~~~~~~~~ In file included from SimulationParameters.h:6, - from IndelProfile.cpp:2: + from BaseCallingProfile.h:7, + from BaseCallingProfile.cpp:5: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -686,9 +724,7 @@ OutputStream.h:33:7: note: 'class OutputStream' declared here 33 | class OutputStream { | ^~~~~~~~~~~~ -In file included from SimulationParameters.h:6, - from BaseCallingProfile.h:7, - from BaseCallingProfile.cpp:5: +In file included from pirs_diploid.cpp:12: InputStream.h: In constructor 'InputStream::InputStream()': InputStream.h:50:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); @@ -703,7 +739,7 @@ InputStream.h:25:7: note: 'class InputStream' declared here 25 | class InputStream { | ^~~~~~~~~~~ -In file included from SimulationParameters.h:7: +In file included from pirs_diploid.cpp:13: OutputStream.h: In constructor 'OutputStream::OutputStream()': OutputStream.h:54:23: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); @@ -757,7 +793,7 @@ make[3]: Leaving directory '/build/reproducible-path/pirs-2.0.2+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/pirs-2.0.2+dfsg/src' dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$(CXX)' - cd src/stator/gcContCvgBias && make -j20 "INSTALL=install --strip-program=true" CC=\$\(CXX\) + cd src/stator/gcContCvgBias && make -j42 "INSTALL=install --strip-program=true" CC=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg/src/stator/gcContCvgBias' g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal self_util.cpp self_util.h g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal main.cpp @@ -783,7 +819,7 @@ make[2]: Leaving directory '/build/reproducible-path/pirs-2.0.2+dfsg/src/stator/gcContCvgBias' make[1]: Leaving directory '/build/reproducible-path/pirs-2.0.2+dfsg' dh_auto_test -O--sourcedirectory=src - cd src && make -j20 check "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1 + cd src && make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg/src' Making check in pirs make[2]: Entering directory '/build/reproducible-path/pirs-2.0.2+dfsg/src/pirs' @@ -855,9 +891,9 @@ dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-12_amd64.deb'. -dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-12_amd64.deb'. -dpkg-deb: building package 'pirs-examples' in '../pirs-examples_2.0.2+dfsg-12_all.deb'. dpkg-deb: building package 'pirs-profiles' in '../pirs-profiles_2.0.2+dfsg-12_all.deb'. +dpkg-deb: building package 'pirs-examples' in '../pirs-examples_2.0.2+dfsg-12_all.deb'. +dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-12_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pirs_2.0.2+dfsg-12_amd64.buildinfo dpkg-genchanges --build=binary -O../pirs_2.0.2+dfsg-12_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -865,12 +901,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/270732/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/206551 and its subdirectories -I: Current time: Sat Mar 1 01:32:11 -12 2025 -I: pbuilder-time-stamp: 1740835931 +I: removing directory /srv/workspace/pbuilder/270732 and its subdirectories +I: Current time: Sat Apr 4 09:56:47 +14 2026 +I: pbuilder-time-stamp: 1775246207