Diff of the two buildlogs: -- --- b1/build.log 2024-11-13 03:01:50.695023702 +0000 +++ b2/build.log 2024-11-13 03:06:30.097047806 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 15 21:19:38 -12 2025 -I: pbuilder-time-stamp: 1765876778 +I: Current time: Wed Nov 13 17:01:54 +14 2024 +I: pbuilder-time-stamp: 1731466914 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,51 +28,83 @@ dpkg-source: info: applying fixTests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/514115/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 13 03:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a2f661ab81934842a2ef6b5d6698229d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='514115' - PS1='# ' - PS2='> ' + INVOCATION_ID=6be1211a447e40c6af9c1844b88545f1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3056687 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pGleGcSh/pbuilderrc_jo85 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pGleGcSh/b1 --logfile b1/build.log pychopper_2.7.10-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pGleGcSh/pbuilderrc_bnma --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pGleGcSh/b2 --logfile b2/build.log pychopper_2.7.10-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/514115/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -382,7 +414,7 @@ Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.67.0-1 [90.2 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 xonsh all 0.18.3+dfsg-2 [469 kB] -Fetched 125 MB in 8s (16.4 MB/s) +Fetched 125 MB in 4s (29.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -1106,8 +1138,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Dec 16 09:23:28 UTC 2025. -Universal Time is now: Tue Dec 16 09:23:28 UTC 2025. +Local time is now: Wed Nov 13 03:04:54 UTC 2024. +Universal Time is now: Wed Nov 13 03:04:54 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1314,7 +1346,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pychopper-2.7.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pychopper_2.7.10-1_source.changes +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pychopper-2.7.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pychopper_2.7.10-1_source.changes dpkg-buildpackage: info: source package pychopper dpkg-buildpackage: info: source version 2.7.10-1 dpkg-buildpackage: info: source distribution unstable @@ -1388,37 +1424,37 @@ running build running build_py creating /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/utils.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/hmmer_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/seq_utils.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper copying pychopper/alignment_hits.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/report.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/hmmer_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/utils.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper copying pychopper/chopper.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/edlib_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper copying pychopper/common_structures.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/parasail_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper copying pychopper/__init__.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper -copying pychopper/report.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/edlib_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/seq_utils.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper +copying pychopper/parasail_backend.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper creating /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts -copying pychopper/scripts/__init__.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts copying pychopper/scripts/pychopper.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts +copying pychopper/scripts/__init__.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts creating /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/__init__.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data creating /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data copying pychopper/primer_data/__init__.py -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data +copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data +copying pychopper/primer_data/PCS111_primers.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data copying pychopper/primer_data/PCS110_primers.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data copying pychopper/primer_data/LSK114_primers.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data -copying pychopper/primer_data/PCS111_primers.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data -copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data -copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data -copying pychopper/phmm_data/PCS110_primers.hmm -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data -copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data -copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/PCS110_primers.hmm -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data -copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data -copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data +copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data cd docs && PYTHONPATH=.. make man make[2]: Entering directory '/build/reproducible-path/pychopper-2.7.10/docs' sphinx-build -b man -d _build/doctrees . _build/man @@ -1440,7 +1476,7 @@ reading sources... [ 25%] index reading sources... [ 38%] modules reading sources... [ 50%] pychopper -Matplotlib created a temporary cache directory at /tmp/matplotlib-g1iwze_l because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +Matplotlib created a temporary cache directory at /tmp/matplotlib-hlvq3sqf because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 62%] pychopper.phmm_data reading sources... [ 75%] pychopper.primer_data reading sources... [ 88%] pychopper.scripts @@ -1469,7 +1505,7 @@ make[1]: Entering directory '/build/reproducible-path/pychopper-2.7.10' dh_auto_test -- --system=custom --test-args="export PATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts:$PATH; \ chmod +x /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH={build_dir} {interpreter} -m pytest -v" - pybuild --test --test-pytest -i python{version} -p 3.12 --system=custom "--test-args=export PATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games; chmod +x /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH={build_dir} {interpreter} -m pytest -v" + pybuild --test --test-pytest -i python{version} -p 3.12 --system=custom "--test-args=export PATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path; chmod +x /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH={build_dir} {interpreter} -m pytest -v" I: pybuild pybuild:308: cp -av /build/reproducible-path/pychopper-2.7.10/pychopper/tests/ /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/ '/build/reproducible-path/pychopper-2.7.10/pychopper/tests/' -> '/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests' '/build/reproducible-path/pychopper-2.7.10/pychopper/tests/__pycache__' -> '/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__' @@ -1487,7 +1523,7 @@ '/build/reproducible-path/pychopper-2.7.10/pychopper/tests/data/ref.fq.gz' -> '/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/ref.fq.gz' '/build/reproducible-path/pychopper-2.7.10/pychopper/tests/test_detector.py' -> '/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/test_detector.py' '/build/reproducible-path/pychopper-2.7.10/pychopper/tests/test_regression_simple.py' -> '/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/test_regression_simple.py' -I: pybuild base:311: export PATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games; chmod +x /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build python3.12 -m pytest -v +I: pybuild base:311: export PATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path; chmod +x /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH=/build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build python3.12 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache @@ -1495,7 +1531,7 @@ rootdir: /build/reproducible-path/pychopper-2.7.10 configfile: pytest.ini testpaths: pychopper -plugins: cov-5.0.0, mock-3.14.0, timeout-2.3.1, arraydiff-0.6.1, typeguard-4.4.1, forked-1.6.0, hypothesis-6.116.0, doctestplus-1.2.1, openfiles-0.6.0, remotedata-0.4.1, xdist-3.6.1, xonsh-0.18.3 +plugins: timeout-2.3.1, arraydiff-0.6.1, mock-3.14.0, remotedata-0.4.1, doctestplus-1.2.1, xdist-3.6.1, forked-1.6.0, cov-5.0.0, typeguard-4.4.1, openfiles-0.6.0, xonsh-0.18.3, hypothesis-6.116.0 collecting ... collected 4 items pychopper/tests/test_detector.py::TestDetector::testPairAlign PASSED [ 25%] @@ -1503,8 +1539,8 @@ pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration PASSED [ 75%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration_umi PASSED [100%] -============================== 4 passed in 4.86s =============================== - rm -fr -- /tmp/dh-xdg-rundir-jQ9GCbfu +============================== 4 passed in 3.99s =============================== + rm -fr -- /tmp/dh-xdg-rundir-TvqRsKa0 set -e; \ for py in `py3versions -sv`; do \ rm -rf ".pybuild/cpython3_${py}_pychopper/pychopper/tests/"; \ @@ -1543,86 +1579,86 @@ running install_lib creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/utils.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/alignment_hits.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data/__pycache__ copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/report.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/pychopper.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/scripts/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/hmmer_backend.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/seq_utils.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/alignment_hits.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/chopper.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/edlib_backend.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/common_structures.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/parasail_backend.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/report.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/utils.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/LSK114_primers.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/PCS111_primers.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data/__pycache__ copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data/__pycache__ -creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/chopper.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/common_structures.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/seq_utils.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/primer_data/LSK114_primers.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/test_regression_simple.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/barcodes.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/ref.fas.gz -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/.gitignore -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/ref.fq.gz -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/ref.fas.gz -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/data/expected_output.fas -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/data -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/test_regression_simple.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/test_detector.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__/test_regression_simple.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ -copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__/test_detector.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/utils.py to utils.cpython-312.pyc +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/tests/__pycache__/test_regression_simple.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/chopper.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/common_structures.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__init__.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/edlib_backend.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/seq_utils.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +creating /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/chopper.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/common_structures.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/seq_utils.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__pycache__ +copying /build/reproducible-path/pychopper-2.7.10/.pybuild/cpython3_3.12_pychopper/build/pychopper/parasail_backend.py -> /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/phmm_data/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/report.py to report.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts/pychopper.py to pychopper.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/hmmer_backend.py to hmmer_backend.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/chopper.py to chopper.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/common_structures.py to common_structures.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/report.py to report.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/primer_data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/test_regression_simple.py to test_regression_simple.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/test_detector.py to test_detector.cpython-312.pyc byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/tests/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/chopper.py to chopper.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/common_structures.py to common_structures.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-312.pyc +byte-compiling /build/reproducible-path/pychopper-2.7.10/debian/python3-pychopper/usr/lib/python3.12/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-312.pyc running install_egg_info running egg_info creating pychopper.egg-info @@ -1701,15 +1737,15 @@ D: dh_python3 pydist:175: trying to find dependency for tqdm==4.26.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-matplotlib', 'python3-pandas', 'python3-pysam', 'python3-pytest', 'python3-tqdm', 'python3:any', 'python3-numpy', 'python3-parasail', 'python3-biopython'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3:any', 'python3-pytest', 'python3-numpy', 'python3-matplotlib', 'python3-parasail', 'python3-pysam', 'python3-pandas', 'python3-biopython', 'python3-tqdm'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1722428707 as canonical time - Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/ref.fas.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/ref.fq.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/ref.fas.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-pychopper chmod a-x usr/share/doc/python3-pychopper/changelog usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 @@ -1757,12 +1793,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3056687/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/514115 and its subdirectories -I: Current time: Mon Dec 15 21:24:49 -12 2025 -I: pbuilder-time-stamp: 1765877089 +I: removing directory /srv/workspace/pbuilder/3056687 and its subdirectories +I: Current time: Wed Nov 13 17:06:29 +14 2024 +I: pbuilder-time-stamp: 1731467189