Diff of the two buildlogs: -- --- b1/build.log 2025-07-19 04:46:22.943136406 +0000 +++ b2/build.log 2025-07-19 04:56:00.239856006 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jul 18 16:40:27 -12 2025 -I: pbuilder-time-stamp: 1752900027 +I: Current time: Sat Aug 22 01:09:24 +14 2026 +I: pbuilder-time-stamp: 1787310564 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying pr1452.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/596110/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 21 11:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='558358a8419e4ffba6b641ec746ae2d3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='596110' - PS1='# ' - PS2='> ' + INVOCATION_ID=87459342ab1e4a389b13a49f883c4f57 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1496326 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uPWozYjR/pbuilderrc_MFlO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uPWozYjR/b1 --logfile b1/build.log python-cobra_0.29.1-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uPWozYjR/pbuilderrc_HkFx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uPWozYjR/b2 --logfile b2/build.log python-cobra_0.29.1-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.32+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.32-1~bpo12+1 (2025-06-21) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/596110/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -384,7 +416,7 @@ Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-sbml5 amd64 5.20.4+dfsg-0.1 [3428 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] -Fetched 155 MB in 3s (45.2 MB/s) +Fetched 155 MB in 21s (7228 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) @@ -1083,8 +1115,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jul 19 04:41:48 UTC 2025. -Universal Time is now: Sat Jul 19 04:41:48 UTC 2025. +Local time is now: Fri Aug 21 11:12:31 UTC 2026. +Universal Time is now: Fri Aug 21 11:12:31 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1297,7 +1329,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-3 dpkg-buildpackage: info: source distribution unstable @@ -1373,90 +1409,90 @@ running build running build_py creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra -copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra +copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web +copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web +copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web +copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build; python3.13 -m pytest tests @@ -1465,7 +1501,7 @@ benchmark: 5.1.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini -plugins: mock-3.14.0, benchmark-5.1.0, typeguard-4.4.2, anyio-4.8.0 +plugins: anyio-4.8.0, typeguard-4.4.2, benchmark-5.1.0, mock-3.14.0 collected 554 items tests/test_core/test_configuration.py ...... [ 1%] @@ -1712,43 +1748,43 @@ --------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ---------------------------------------------------------------------------------------------------------------------- Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[glpk] 2.5720 (1.0) 19.6370 (1.0) 2.7306 (1.00) 0.5205 (1.09) 2.7030 (1.00) 0.0470 (1.07) 21;116 366,225.0149 (1.00) 5318 1 -test_subtract_metabolite_benchmark[cplex] 2.5930 (1.01) 19.8450 (1.01) 2.7262 (1.0) 0.4773 (1.0) 2.7020 (1.0) 0.0560 (1.27) 19;84 366,814.6525 (1.0) 5357 1 -test_subtract_metabolite_benchmark[gurobi] 2.6340 (1.02) 92.1320 (4.69) 2.7710 (1.02) 1.3667 (2.86) 2.7310 (1.01) 0.0440 (1.0) 10;133 360,882.7042 (0.98) 4630 1 -test_achr_sample_benchmark 253.8940 (98.71) 604.3510 (30.78) 400.2647 (146.82) 92.5953 (194.01) 441.5790 (163.43) 202.1765 (>1000.0) 280;0 2,498.3469 (0.01) 777 1 -test_change_objective_benchmark[optlang-glpk] 341.0920 (132.62) 853.5970 (43.47) 359.1277 (131.73) 27.4562 (57.53) 352.7870 (130.57) 8.5200 (193.74) 216;368 2,784.5246 (0.01) 3223 1 -test_optgp_sample_benchmark 373.1310 (145.07) 564.5490 (28.75) 382.3381 (140.25) 9.5233 (19.95) 379.2620 (140.36) 3.6645 (83.33) 198;224 2,615.4862 (0.01) 1444 1 -test_loopless_benchmark_after 1,605.0000 (624.03) 1,819.8870 (92.68) 1,631.0064 (598.28) 19.9002 (41.70) 1,626.4120 (601.93) 24.4473 (555.92) 52;4 613.1184 (0.00) 297 1 -test_loopless_benchmark_before 6,688.7770 (>1000.0) 7,073.9640 (360.24) 6,834.1244 (>1000.0) 55.0725 (115.39) 6,825.8905 (>1000.0) 57.1065 (>1000.0) 20;5 146.3245 (0.00) 96 1 -test_minimal_medium_linear_benchmark 8,132.1680 (>1000.0) 32,137.9710 (>1000.0) 13,906.0752 (>1000.0) 4,638.4796 (>1000.0) 14,016.9060 (>1000.0) 2,261.0845 (>1000.0) 16;15 71.9110 (0.00) 73 1 -test_minimal_medium_mip_benchmark 14,719.2060 (>1000.0) 32,597.9410 (>1000.0) 22,082.5265 (>1000.0) 7,225.2647 (>1000.0) 20,192.4835 (>1000.0) 16,293.4450 (>1000.0) 8;0 45.2847 (0.00) 20 1 -test_copy_benchmark[optlang-glpk] 15,768.7750 (>1000.0) 687,480.5510 (>1000.0) 55,794.8776 (>1000.0) 120,576.6664 (>1000.0) 16,959.4610 (>1000.0) 4,593.8088 (>1000.0) 7;8 17.9228 (0.00) 61 1 -test_gpr_equality_benchmark 26,078.1600 (>1000.0) 27,074.3270 (>1000.0) 26,399.4139 (>1000.0) 223.5867 (468.46) 26,400.3390 (>1000.0) 244.4070 (>1000.0) 8;2 37.8796 (0.00) 33 1 -test_deepcopy_benchmark 26,917.3110 (>1000.0) 37,158.1390 (>1000.0) 29,566.1525 (>1000.0) 3,328.4094 (>1000.0) 28,743.0170 (>1000.0) 2,421.5100 (>1000.0) 1;1 33.8225 (0.00) 8 1 -test_single_reaction_deletion_benchmark[glpk] 32,402.2930 (>1000.0) 35,367.5780 (>1000.0) 33,305.9725 (>1000.0) 767.8600 (>1000.0) 33,094.8745 (>1000.0) 522.0790 (>1000.0) 8;4 30.0246 (0.00) 30 1 -test_fastcc_benchmark[glpk] 75,540.1550 (>1000.0) 242,885.8070 (>1000.0) 124,726.9556 (>1000.0) 72,420.1284 (>1000.0) 83,230.7010 (>1000.0) 94,852.9328 (>1000.0) 1;0 8.0175 (0.00) 5 1 -test_add_metabolite_benchmark[gurobi] 76,884.9450 (>1000.0) 78,658.0240 (>1000.0) 77,664.9069 (>1000.0) 563.6343 (>1000.0) 77,518.1685 (>1000.0) 1,048.4930 (>1000.0) 6;0 12.8758 (0.00) 14 1 -test_add_metabolite_benchmark[cplex] 78,024.4300 (>1000.0) 170,147.9550 (>1000.0) 132,904.5604 (>1000.0) 45,576.7418 (>1000.0) 167,205.1780 (>1000.0) 86,417.1535 (>1000.0) 2;0 7.5242 (0.00) 7 1 -test_single_gene_deletion_fba_benchmark[glpk] 152,050.4650 (>1000.0) 208,652.9130 (>1000.0) 184,776.8878 (>1000.0) 29,648.7458 (>1000.0) 202,503.8810 (>1000.0) 55,522.6940 (>1000.0) 2;0 5.4119 (0.00) 5 1 -test_gpr_symbolism_benchmark 163,586.7090 (>1000.0) 167,659.5760 (>1000.0) 166,088.9643 (>1000.0) 1,651.9689 (>1000.0) 166,394.7870 (>1000.0) 2,780.3690 (>1000.0) 1;0 6.0209 (0.00) 6 1 -test_add_metabolite_benchmark[glpk] 166,709.6800 (>1000.0) 173,789.2240 (>1000.0) 170,740.1573 (>1000.0) 2,632.1279 (>1000.0) 171,011.2470 (>1000.0) 3,611.8220 (>1000.0) 2;0 5.8569 (0.00) 6 1 -test_flux_variability_loopless_benchmark[glpk] 168,815.9510 (>1000.0) 175,371.4500 (>1000.0) 172,743.7110 (>1000.0) 2,775.2898 (>1000.0) 173,554.7880 (>1000.0) 5,394.1810 (>1000.0) 2;0 5.7889 (0.00) 6 1 -test_achr_init_benchmark 225,595.7880 (>1000.0) 283,657.6280 (>1000.0) 249,969.9188 (>1000.0) 21,002.8210 (>1000.0) 245,893.2350 (>1000.0) 16,929.9643 (>1000.0) 2;1 4.0005 (0.00) 5 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 232,826.2210 (>1000.0) 238,953.0090 (>1000.0) 234,740.5792 (>1000.0) 2,422.5341 (>1000.0) 233,761.3240 (>1000.0) 2,047.8080 (>1000.0) 1;1 4.2600 (0.00) 5 1 -test_double_gene_deletion_benchmark 243,117.1340 (>1000.0) 274,448.5810 (>1000.0) 256,262.2450 (>1000.0) 12,845.0028 (>1000.0) 250,256.8720 (>1000.0) 19,447.4697 (>1000.0) 2;0 3.9023 (0.00) 5 1 -test_optgp_init_benchmark 250,021.7140 (>1000.0) 643,153.8380 (>1000.0) 423,686.7718 (>1000.0) 145,462.3739 (>1000.0) 380,042.3520 (>1000.0) 168,676.8378 (>1000.0) 2;0 2.3602 (0.00) 5 1 -test_pfba_benchmark[glpk] 292,889.4890 (>1000.0) 300,749.2990 (>1000.0) 297,170.3156 (>1000.0) 2,939.7650 (>1000.0) 297,756.8180 (>1000.0) 3,827.5025 (>1000.0) 2;0 3.3651 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 329,642.3060 (>1000.0) 340,107.6160 (>1000.0) 332,477.2926 (>1000.0) 4,347.2481 (>1000.0) 330,524.6820 (>1000.0) 3,907.5673 (>1000.0) 1;1 3.0077 (0.00) 5 1 -test_double_reaction_deletion_benchmark 394,118.2350 (>1000.0) 484,980.4580 (>1000.0) 441,485.7898 (>1000.0) 42,583.3379 (>1000.0) 441,173.2010 (>1000.0) 81,856.6055 (>1000.0) 2;0 2.2651 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 438,845.5350 (>1000.0) 469,919.4900 (>1000.0) 448,755.8996 (>1000.0) 12,312.1870 (>1000.0) 446,683.2990 (>1000.0) 11,709.9937 (>1000.0) 1;0 2.2284 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 514,262.1750 (>1000.0) 521,867.7870 (>1000.0) 517,598.6010 (>1000.0) 2,903.5538 (>1000.0) 517,792.9050 (>1000.0) 3,939.3945 (>1000.0) 2;0 1.9320 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 647,468.1740 (>1000.0) 1,243,249.5770 (>1000.0) 906,381.8722 (>1000.0) 244,302.9158 (>1000.0) 826,302.0190 (>1000.0) 390,357.9030 (>1000.0) 2;0 1.1033 (0.00) 5 1 +test_subtract_metabolite_benchmark[glpk] 2.5691 (1.0) 25.6470 (1.35) 2.7035 (1.0) 0.4512 (1.35) 2.6850 (1.0) 0.0582 (1.46) 14;81 369,893.8900 (1.0) 4490 1 +test_subtract_metabolite_benchmark[gurobi] 2.5961 (1.01) 18.9641 (1.0) 2.7113 (1.00) 0.3352 (1.0) 2.6971 (1.00) 0.0449 (1.13) 22;120 368,829.0623 (1.00) 4382 1 +test_subtract_metabolite_benchmark[cplex] 2.6231 (1.02) 20.2961 (1.07) 2.7381 (1.01) 0.5089 (1.52) 2.7139 (1.01) 0.0398 (1.0) 13;157 365,214.5794 (0.99) 4465 1 +test_achr_sample_benchmark 281.6259 (109.62) 571.2179 (30.12) 326.8040 (120.88) 75.5073 (225.27) 287.7009 (107.15) 26.1379 (656.50) 198;204 3,059.9381 (0.01) 1023 1 +test_change_objective_benchmark[optlang-glpk] 338.0559 (131.59) 879.7669 (46.39) 349.8777 (129.42) 18.9552 (56.55) 345.0911 (128.53) 5.0722 (127.40) 135;427 2,858.1415 (0.01) 2755 1 +test_optgp_sample_benchmark 418.3261 (162.83) 692.8500 (36.53) 430.2503 (159.15) 18.1987 (54.30) 424.9329 (158.26) 4.5649 (114.65) 97;216 2,324.2287 (0.01) 1278 1 +test_loopless_benchmark_after 2,795.0560 (>1000.0) 19,088.5351 (>1000.0) 8,849.4165 (>1000.0) 3,428.2968 (>1000.0) 8,152.1519 (>1000.0) 3,474.3597 (>1000.0) 12;3 113.0018 (0.00) 49 1 +test_minimal_medium_mip_benchmark 8,403.2109 (>1000.0) 8,977.5771 (473.40) 8,623.5497 (>1000.0) 141.7805 (423.00) 8,598.9530 (>1000.0) 196.7230 (>1000.0) 21;0 115.9615 (0.00) 72 1 +test_minimal_medium_linear_benchmark 8,598.5789 (>1000.0) 9,600.7341 (506.26) 8,757.3268 (>1000.0) 166.2903 (496.12) 8,696.7829 (>1000.0) 181.9258 (>1000.0) 6;2 114.1901 (0.00) 57 1 +test_loopless_benchmark_before 14,087.7180 (>1000.0) 40,998.7022 (>1000.0) 26,337.2433 (>1000.0) 11,230.4157 (>1000.0) 34,899.3060 (>1000.0) 22,012.0628 (>1000.0) 11;0 37.9690 (0.00) 23 1 +test_copy_benchmark[optlang-glpk] 22,904.1029 (>1000.0) 232,349.2111 (>1000.0) 98,495.2612 (>1000.0) 88,779.0732 (>1000.0) 55,571.0299 (>1000.0) 134,079.3917 (>1000.0) 1;0 10.1528 (0.00) 5 1 +test_gpr_equality_benchmark 26,155.1929 (>1000.0) 26,925.5571 (>1000.0) 26,450.5866 (>1000.0) 187.8655 (560.49) 26,410.8120 (>1000.0) 338.8406 (>1000.0) 11;0 37.8063 (0.00) 33 1 +test_single_reaction_deletion_benchmark[glpk] 32,766.7920 (>1000.0) 33,786.1360 (>1000.0) 33,152.8266 (>1000.0) 237.6766 (709.10) 33,069.2180 (>1000.0) 328.5827 (>1000.0) 9;0 30.1633 (0.00) 29 1 +test_deepcopy_benchmark 69,249.6630 (>1000.0) 610,232.4310 (>1000.0) 271,598.2927 (>1000.0) 233,684.9348 (>1000.0) 184,435.6621 (>1000.0) 381,749.8126 (>1000.0) 1;0 3.6819 (0.00) 5 1 +test_add_metabolite_benchmark[gurobi] 74,886.9251 (>1000.0) 128,320.1950 (>1000.0) 79,073.4287 (>1000.0) 14,176.8267 (>1000.0) 75,245.9001 (>1000.0) 490.1660 (>1000.0) 1;1 12.6465 (0.00) 14 1 +test_add_metabolite_benchmark[cplex] 75,180.4102 (>1000.0) 76,896.5450 (>1000.0) 75,680.0723 (>1000.0) 477.8199 (>1000.0) 75,562.1435 (>1000.0) 398.6508 (>1000.0) 3;2 13.2135 (0.00) 14 1 +test_add_metabolite_benchmark[glpk] 75,237.2870 (>1000.0) 78,101.3661 (>1000.0) 75,675.2304 (>1000.0) 781.2909 (>1000.0) 75,346.8856 (>1000.0) 528.4329 (>1000.0) 2;1 13.2144 (0.00) 14 1 +test_fastcc_benchmark[glpk] 77,790.9691 (>1000.0) 91,836.6902 (>1000.0) 81,144.3104 (>1000.0) 4,016.8955 (>1000.0) 80,141.7641 (>1000.0) 3,598.2423 (>1000.0) 1;1 12.3237 (0.00) 11 1 +test_achr_init_benchmark 141,030.5479 (>1000.0) 279,364.2532 (>1000.0) 183,517.4467 (>1000.0) 51,926.3113 (>1000.0) 156,001.2209 (>1000.0) 66,218.4161 (>1000.0) 1;0 5.4491 (0.00) 7 1 +test_gpr_symbolism_benchmark 166,227.5780 (>1000.0) 168,965.1369 (>1000.0) 167,711.6166 (>1000.0) 958.6817 (>1000.0) 167,647.8605 (>1000.0) 1,220.2060 (>1000.0) 2;0 5.9626 (0.00) 6 1 +test_optgp_init_benchmark 168,000.8539 (>1000.0) 275,973.3000 (>1000.0) 231,466.0307 (>1000.0) 51,297.6946 (>1000.0) 263,959.9571 (>1000.0) 88,562.7768 (>1000.0) 1;0 4.3203 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 180,942.2120 (>1000.0) 185,385.4710 (>1000.0) 182,480.6035 (>1000.0) 1,670.4430 (>1000.0) 181,801.3178 (>1000.0) 2,102.5462 (>1000.0) 1;0 5.4800 (0.00) 6 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 241,589.0410 (>1000.0) 277,094.2659 (>1000.0) 251,195.9282 (>1000.0) 14,647.1123 (>1000.0) 245,916.7161 (>1000.0) 11,607.5077 (>1000.0) 1;1 3.9810 (0.00) 5 1 +test_double_gene_deletion_benchmark 252,130.4770 (>1000.0) 269,788.9511 (>1000.0) 261,303.7374 (>1000.0) 7,391.7680 (>1000.0) 258,491.4721 (>1000.0) 11,791.3899 (>1000.0) 2;0 3.8270 (0.00) 5 1 +test_single_gene_deletion_fba_benchmark[glpk] 282,223.4700 (>1000.0) 526,469.4230 (>1000.0) 367,684.0202 (>1000.0) 114,499.4902 (>1000.0) 293,255.3550 (>1000.0) 188,269.9249 (>1000.0) 1;0 2.7197 (0.00) 5 1 +test_pfba_benchmark[glpk] 304,610.6962 (>1000.0) 321,771.1661 (>1000.0) 312,551.1379 (>1000.0) 6,750.4601 (>1000.0) 313,233.6070 (>1000.0) 10,273.6623 (>1000.0) 2;0 3.1995 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 356,453.1559 (>1000.0) 428,781.9529 (>1000.0) 378,002.0420 (>1000.0) 29,262.9712 (>1000.0) 365,296.4071 (>1000.0) 27,823.8113 (>1000.0) 1;0 2.6455 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 418,283.9931 (>1000.0) 1,289,907.6829 (>1000.0) 810,645.5936 (>1000.0) 339,155.9143 (>1000.0) 734,063.2358 (>1000.0) 499,628.6684 (>1000.0) 2;0 1.2336 (0.00) 5 1 +test_double_reaction_deletion_benchmark 432,365.6410 (>1000.0) 633,283.1138 (>1000.0) 538,755.0034 (>1000.0) 82,277.4381 (>1000.0) 518,375.7050 (>1000.0) 131,624.2725 (>1000.0) 2;0 1.8561 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 441,499.5089 (>1000.0) 450,244.8372 (>1000.0) 445,071.1288 (>1000.0) 3,435.6302 (>1000.0) 444,835.3280 (>1000.0) 4,932.0942 (>1000.0) 2;0 2.2468 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 531,728.3680 (>1000.0) 1,419,046.1112 (>1000.0) 715,379.7229 (>1000.0) 393,453.1321 (>1000.0) 538,101.1080 (>1000.0) 236,272.6922 (>1000.0) 1;1 1.3979 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 177.67s (0:02:57) ==== +==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 206.59s (0:03:26) ==== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1786,238 +1822,238 @@ running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/context.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/array.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/process_pool.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/solver.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/mat.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/yaml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/sbml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/dict.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/sbml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/yaml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/mat.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/load.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/load.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/annotations.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/delete.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/modify.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/model_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/solution.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/configuration.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/formula.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/object.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/metabolite.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/group.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/object.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/configuration.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/solution.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/dictlist.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/formula.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/achr.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/core.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/sampling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/optgp.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/sampling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/achr.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/core.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/context.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/array.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/solver.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/process_pool.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/.benchmarks -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/json.py to json.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__init__.py to __init__.cpython-313.pyc +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/annotations.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/model_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/modify.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/delete.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/array.py to array.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/process_pool.py to process_pool.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/context.py to context.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/solver.py to solver.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/util.py to util.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/dict.py to dict.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/mat.py to mat.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/sbml.py to sbml.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/yaml.py to yaml.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/load.py to load.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/room.py to room.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/annotations.py to annotations.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/exceptions.py to exceptions.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/modify.py to modify.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/delete.py to delete.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/validate.py to validate.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/summary.py to summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/json.py to json.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/yaml.py to yaml.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/mat.py to mat.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/group.py to group.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/dictlist.py to dictlist.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/configuration.py to configuration.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/species.py to species.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/metabolite.py to metabolite.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/formula.py to formula.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/solution.py to solution.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/formula.py to formula.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/gene.py to gene.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/dictlist.py to dictlist.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/object.py to object.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/species.py to species.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/configuration.py to configuration.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/group.py to group.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/singleton.py to singleton.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/reaction.py to reaction.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/object.py to object.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/sampling.py to sampling.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/achr.py to achr.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/optgp.py to optgp.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/core.py to core.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/sampling.py to sampling.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/achr.py to achr.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/process_pool.py to process_pool.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/solver.py to solver.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/context.py to context.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/array.py to array.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/util.py to util.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/annotations.py to annotations.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/summary.py to summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/delete.py to delete.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/validate.py to validate.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/modify.py to modify.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/exceptions.py to exceptions.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/room.py to room.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-313.pyc running install_egg_info running egg_info creating src/cobra.egg-info @@ -2060,8 +2096,8 @@ dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-3_amd64.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-3_all.deb'. +dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2069,12 +2105,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1496326/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/596110 and its subdirectories -I: Current time: Fri Jul 18 16:46:22 -12 2025 -I: pbuilder-time-stamp: 1752900382 +I: removing directory /srv/workspace/pbuilder/1496326 and its subdirectories +I: Current time: Sat Aug 22 01:18:59 +14 2026 +I: pbuilder-time-stamp: 1787311139