Diff of the two buildlogs: -- --- b1/build.log 2025-03-22 14:00:56.037252581 +0000 +++ b2/build.log 2025-03-22 14:08:28.437022022 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Mar 22 01:51:12 -12 2025 -I: pbuilder-time-stamp: 1742651472 +I: Current time: Sat Apr 25 10:23:58 +14 2026 +I: pbuilder-time-stamp: 1777062238 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3081549/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 20:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='486c11626075408cbebb7b9ac2a43e3c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3081549' - PS1='# ' - PS2='> ' + INVOCATION_ID=d32d41657ad44ebe943161e751d51e4d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2839821 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bX7cbueW/pbuilderrc_EFyW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bX7cbueW/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bX7cbueW/pbuilderrc_9Hwk --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bX7cbueW/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3081549/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -254,7 +286,7 @@ Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-7+b1 [23.0 MB] -Fetched 110 MB in 6s (20.0 MB/s) +Fetched 110 MB in 7s (15.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19807 files and directories currently installed.) @@ -694,8 +726,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Mar 22 13:53:45 UTC 2025. -Universal Time is now: Sat Mar 22 13:53:45 UTC 2025. +Local time is now: Fri Apr 24 20:25:29 UTC 2026. +Universal Time is now: Fri Apr 24 20:25:29 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -814,7 +846,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -858,147 +894,147 @@ running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb -copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test +copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test +copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech +copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech +copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr -copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io -copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io +copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence +copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr +copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments +copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr -copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io +copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments -copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence -copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs -copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb -copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment +copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe -copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc -copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe +copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs +copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment -copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers -copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc +copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb +copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers +copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr +copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -1164,8 +1200,6 @@ Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.15; use exec_module() instead -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' - "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py:343: SyntaxWarning: invalid escape sequence '\s' argmin {\sum w_i |x_i - \mu|} :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.15; use exec_module() instead @@ -1199,314 +1233,274 @@ re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7z8evbq7' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok -testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok -testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok -testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok -testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL -testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok -testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok -testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok -testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbqepmrjm' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5ckkz73i' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9oxw1gqt' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok -testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok -testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok -testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok -testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok -testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:59: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - array = numpy.array(self.table) -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:64: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - array = numpy.array(t) -ok -testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplp2do5k1' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok -testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok -testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok -testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok -testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok -testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxkp7sutz' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok -testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok -testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok -testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' -testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) -r526 ... ok -testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok -testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok -testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok -testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok -testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok -testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok -testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ERROR -testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok -testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok -testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok -testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok -testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) -@see: [CSB 0000067] ... ok -testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok -testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping) -Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok -testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok -testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping) -Strictly speaking, this is a regression test. But it so essential that ... ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok -testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok -testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok -testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok -testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok -testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok -testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok -testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok -testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok -testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok -testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) -@see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) -@see: [CSB 0000052] ... ok -testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok -testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok -testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok -testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok -testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok -testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok -testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok -testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok -testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok -testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok -testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok -testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok -testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing) -@see: [CSB 0000045] ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok -testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) -@see: [CSB 0000056] ... ok -testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps6lmqr7c' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok -testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok -testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2g08mdrh' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' + "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] +testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok +testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok +testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok +testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok +testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> + self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok -testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok -testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok -testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok -testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok -testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok -testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok -testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok -testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - self._clans_instance.filename)).read().split('\n', 1)[1] +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok -testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok -testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok -testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok -testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok -testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok -testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok +testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok +testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok +testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok +testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok +testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok +testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7o00hskn' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl740jqxb' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxryo52yu' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5ipx6mis' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu5ez65uz' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptji0sxtg' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkzop1mg3' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps7ff3mx7' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6o1lwuj2' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4hst4vg1' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8jl8w9sf' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok +testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok +testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok +testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok +testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok +testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw4d5w5yx' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpemnpn0sf' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7mmd_e9c' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok -testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok -testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok -testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok -testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok -testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxrjyudgh' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok +testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok +testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok +testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok +testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok +testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok +testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok +testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok +testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok +testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok +testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok +testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok +testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok +testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok +testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok +testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpszci2ozy' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok +testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok +testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok +testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok +testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok +testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok +testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok +testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok +testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok +testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok +testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok +testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok +testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok +testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok +testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok +testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok +testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok +testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok +testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok +testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok +testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok +testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok +testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok +testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok +testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok +testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok +testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok +testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok +testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok +testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok +testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok +testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok +testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok +testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok +testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok +testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok +testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok +testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok +testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok +testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok +testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkwo92sqt' mode='r' encoding='UTF-8'> + new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok -testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> - self.data = open(self.file).read() +testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok +testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> + for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok -testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok -testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead - array = numpy.fromstring(map_data, numpy.float32, count) -ok -testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok -testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok -testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok -testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok +testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok +testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok +testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok +testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok +testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok +testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok +testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok +testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok +testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok +testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok +testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok +testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok +testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok +testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok +testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok +testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok +testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok +testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok +testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok +testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok +testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok +testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok +testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok +testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok +testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok +testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) -@see: [CSB 0000122] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok +@see: [CSB 0000122] ... ok testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) @see: [CSB 0000030] ... ok testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) @@ -1589,10 +1583,10 @@ testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_cy_a87k' mode='r' encoding='UTF-8'> +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeh5z1out' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpokwk2pa5' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd4dsqsh2' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1621,60 +1615,219 @@ testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok -testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok -testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok -testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok -testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok -testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok -testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok -testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok -testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok -testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok -testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok -testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok -testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok -testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok -testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok -testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok -testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok -testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok -testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok -testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok -testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok -testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok -testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok -testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok -testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok -testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok +testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok +testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok +testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok +testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok +testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok +testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok +testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok +testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok +testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + self._clans_instance.filename)).read().split('\n', 1)[1] +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok +testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok +testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok +testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok +testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok +testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok +testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm38zg2ht' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2llnkp55' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpevx_m073' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmrq3n4_n' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2vw7aqde' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjo7f6nmg' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok +testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok +testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok +testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok +testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok +testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvlw6x6r7' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj17kaykf' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok +testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> + self.data = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok +testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok +testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) +@see: [CSB 0000056] ... ok +testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplit96xir' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok +testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok +testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt68o_cg9' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead + array = numpy.fromstring(map_data, numpy.float32, count) +ok +testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok +testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok +testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok +testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok +testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) +@see: [CSB 0000067] ... ok +testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok +testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping) +Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok +testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok +testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping) +Strictly speaking, this is a regression test. But it so essential that ... ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok +testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok +testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok +testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok +testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok +testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok +testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok +testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok +testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok +testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok +testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) +@see: [CSB 0000031] ... ok +testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) +@see: [CSB 0000052] ... ok +testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok +testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok +testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok +testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok +testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok +testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok +testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok +testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok +testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok +testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok +testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok +testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok +testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing) +@see: [CSB 0000045] ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok @@ -1711,208 +1864,6 @@ testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok -testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok -testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok -testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok -testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok -testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok -testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok -testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok -testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok -testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok -testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok -testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok -testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok -testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok -testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok -testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok -testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok -testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok -testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok -testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok -testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp31b3lq0h' mode='r' encoding='UTF-8'> - new = open(tmp.name).read().rstrip() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok -testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> - for line in open(file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok -testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok -testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok -testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok -testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok -testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok -testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok -testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok -testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok -testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok -testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok -testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok -testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok -testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok -testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok -testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok -testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok -testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok -testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok -testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok -testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok -testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok -testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok -testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok -testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok -testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok -testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> - self.a3m = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok -testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok -testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok -testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok -testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok -testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok -testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsqube11t' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpifdafmy6' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpo47v02sz' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_5krphva' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5ntvtkhy' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi3cmqgnu' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok -testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok -testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok -testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok -testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok -testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbhurby_i' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2j8w9t3p' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok -testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok -testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok -testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok -testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok -testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok -testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok -testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok -testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok -testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok -testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok -testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok @@ -1950,15 +1901,8 @@ testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok -testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok -testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok -testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok -testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok -testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' -testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok -testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok -testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok +testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok +testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok @@ -1966,6 +1910,8 @@ testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok +testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' +testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) @@ -1978,54 +1924,9 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok -testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok -testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok -testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok -testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok -testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok -testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok -testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok -testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok -testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok -testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok -testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok -testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok -testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok -testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok -testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. - initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. - momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), -ok -testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok -testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok -testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' -testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok -testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok -testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok -testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' -testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok -testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py:259: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - randoms = numpy.random.multivariate_normal(mean=numpy.zeros(d), -ok -testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok -testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok -testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok -testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok -testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok -testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok -testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok -testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok -testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok -testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok -testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR -testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR -testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR -testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR +testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok +testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok +testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok @@ -2083,21 +1984,141 @@ testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok - -====================================================================== -ERROR: testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ----------------------------------------------------------------------- -Traceback (most recent call last): - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py", line 109, in testRotationMatrix - R2 = rotation_matrix([0, 0, 1], np.pi / 2.0) - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py", line 155, in rotation_matrix - axis = numpy.asfarray(axis) / norm(axis) - ^^^^^^^^^^^^^^ - File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 400, in __getattr__ - raise AttributeError( - ...<3 lines>... - ) -AttributeError: `np.asfarray` was removed in the NumPy 2.0 release. Use `np.asarray` with a proper dtype instead. +testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok +testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok +testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok +testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok +testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok +testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok +testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok +testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok +testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok +testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok +testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok +testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. + initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. + momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +ok +testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok +testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok +testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' +testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok +testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok +testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok +testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' +testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok +testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py:259: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + randoms = numpy.random.multivariate_normal(mean=numpy.zeros(d), +ok +testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok +testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok +testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok +testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok +testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok +testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok +testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok +testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok +testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok +testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok +testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR +testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR +testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR +testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyrvxozgm' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok +testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok +testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok +testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok +testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL +testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok +testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok +testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok +testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoq9uzdpv' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj_bvn62y' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp56yww9aa' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok +testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok +testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok +testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok +testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok +testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:59: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + array = numpy.array(self.table) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:64: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + array = numpy.array(t) +ok +testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd5alt1mo' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok +testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok +testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok +testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok +testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok +testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3nrgxv0t' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok +testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok +testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' +testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) +r526 ... ok +testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok +testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok +testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok +testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok +testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok +testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok +testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ERROR +testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok +testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok +testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok +testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok +testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok +testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok ====================================================================== ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) @@ -2157,13 +2178,19 @@ ValueError: operands could not be broadcast together with shapes (195,) (305,) ====================================================================== -FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) +ERROR: testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ---------------------------------------------------------------------- Traceback (most recent call last): - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit - with self.assertRaises(RuntimeError): - ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ -AssertionError: RuntimeError not raised + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py", line 109, in testRotationMatrix + R2 = rotation_matrix([0, 0, 1], np.pi / 2.0) + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py", line 155, in rotation_matrix + axis = numpy.asfarray(axis) / norm(axis) + ^^^^^^^^^^^^^^ + File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 400, in __getattr__ + raise AttributeError( + ...<3 lines>... + ) +AttributeError: `np.asfarray` was removed in the NumPy 2.0 release. Use `np.asarray` with a proper dtype instead. ====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) @@ -2174,8 +2201,17 @@ ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^ AssertionError: True is not false +====================================================================== +FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit + with self.assertRaises(RuntimeError): + ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ +AssertionError: RuntimeError not raised + ---------------------------------------------------------------------- -Ran 697 tests in 212.201s +Ran 697 tests in 196.348s FAILED (failures=2, errors=6, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -2302,338 +2338,377 @@ running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -2645,88 +2720,49 @@ /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:343: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2771,12 +2807,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2839821/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3081549 and its subdirectories -I: Current time: Sat Mar 22 02:00:55 -12 2025 -I: pbuilder-time-stamp: 1742652055 +I: removing directory /srv/workspace/pbuilder/2839821 and its subdirectories +I: Current time: Sat Apr 25 10:31:27 +14 2026 +I: pbuilder-time-stamp: 1777062687