Diff of the two buildlogs: -- --- b1/build.log 2025-02-01 10:32:11.089710332 +0000 +++ b2/build.log 2025-02-01 10:40:32.974900168 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 31 21:53:51 -12 2025 -I: pbuilder-time-stamp: 1738403631 +I: Current time: Sat Mar 7 06:55:12 +14 2026 +I: pbuilder-time-stamp: 1772816112 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying sphinx-8.0.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/896280/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 6 16:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b78feb35b28b4a3d9495aad5660ac6fc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='896280' - PS1='# ' - PS2='> ' + INVOCATION_ID=cb05defa57ac43b39d4e4de60bf76db7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=742230 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IV8TnjsI/pbuilderrc_mhRM --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IV8TnjsI/b1 --logfile b1/build.log python-gplearn_0.4.2-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IV8TnjsI/pbuilderrc_kYxE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IV8TnjsI/b2 --logfile b2/build.log python-gplearn_0.4.2-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/896280/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -160,7 +192,7 @@ Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] -Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-2 [861 kB] +Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] @@ -256,7 +288,7 @@ Get: 129 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] -Fetched 93.0 MB in 3s (26.9 MB/s) +Fetched 93.0 MB in 9s (10.4 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) @@ -375,8 +407,8 @@ Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. -Preparing to unpack .../021-automake_1%3a1.17-2_all.deb ... -Unpacking automake (1:1.17-2) ... +Preparing to unpack .../021-automake_1%3a1.17-3_all.deb ... +Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... @@ -686,8 +718,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 1 09:56:44 UTC 2025. -Universal Time is now: Sat Feb 1 09:56:44 UTC 2025. +Local time is now: Fri Mar 6 16:55:49 UTC 2026. +Universal Time is now: Fri Mar 6 16:55:49 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -716,7 +748,7 @@ Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... -Setting up automake (1:1.17-2) ... +Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up python3.12-minimal (3.12.8-5) ... @@ -821,7 +853,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-gplearn-0.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gplearn_0.4.2-3_source.changes +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-gplearn-0.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-gplearn_0.4.2-3_source.changes dpkg-buildpackage: info: source package python-gplearn dpkg-buildpackage: info: source version 0.4.2-3 dpkg-buildpackage: info: source distribution unstable @@ -858,22 +894,22 @@ running build running build_py creating /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn +copying gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn copying gplearn/_program.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn copying gplearn/__init__.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn +copying gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn copying gplearn/functions.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn copying gplearn/genetic.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn -copying gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn -copying gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn +copying gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn copying gplearn/_program.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn copying gplearn/__init__.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn +copying gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn copying gplearn/functions.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn copying gplearn/genetic.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn -copying gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn -copying gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build; python3.12 -m pytest -k ' not test_sklearn_regressor_checks and not test_sklearn_classifier_check and not test_parallel_custom_metric and not test_parallel_custom_function and not test_parallel_custom_transformer and not test_get_n_jobs' ============================= test session starts ============================== @@ -886,9 +922,45 @@ tests/test_examples.py ..... [ 12%] tests/test_fitness.py .... [ 20%] tests/test_functions.py .. [ 25%] -tests/test_genetic.py ................................... [ 97%] +tests/test_genetic.py ...........................F....... [ 97%] tests/test_utils.py . [100%] +=================================== FAILURES =================================== +__________________________ test_transformer_iterable ___________________________ + + def test_transformer_iterable(): + """Check that the transformer is iterable""" + + random_state = check_random_state(415) + X = np.reshape(random_state.uniform(size=50), (5, 10)) + y = random_state.uniform(size=5) + function_set = ['add', 'sub', 'mul', 'div', 'sqrt', 'log', 'abs', 'neg', + 'inv', 'max', 'min'] + est = SymbolicTransformer(population_size=500, generations=2, + function_set=function_set, random_state=0) + + # Check unfitted + unfitted_len = len(est) + unfitted_iter = [gp.length_ for gp in est] + expected_iter = [] + + assert(unfitted_len == 0) + assert(unfitted_iter == expected_iter) + + # Check fitted + est.fit(X, y) + fitted_len = len(est) + fitted_iter = [gp.length_ for gp in est] + expected_iter = [8, 12, 2, 29, 9, 33, 9, 8, 4, 22] + + assert(fitted_len == 10) +> assert(fitted_iter == expected_iter) +E assert [8, 12, 1, 29, 9, 33, ...] == [8, 12, 2, 29, 9, 33, ...] +E +E At index 2 diff: 1 != 2 +E Use -v to get more diff + +tests/test_genetic.py:997: AssertionError =============================== warnings summary =============================== .pybuild/cpython3_3.12_gplearn/build/tests/test_estimator_checks.py::test_sklearn_transformer_checks /usr/lib/python3/dist-packages/sklearn/utils/estimator_checks.py:659: SkipTestWarning: pandas is not installed: not testing for input of type pandas.Series to class weight. @@ -899,7 +971,10 @@ warnings.warn(str(exception), SkipTestWarning) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -========== 48 passed, 6 deselected, 2 warnings in 1073.08s (0:17:53) =========== +=========================== short test summary info ============================ +FAILED tests/test_genetic.py::test_transformer_iterable - assert [8, 12, 1, 2... +====== 1 failed, 47 passed, 6 deselected, 2 warnings in 209.48s (0:03:29) ====== +E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build; python3.12 -m pytest -k ' not test_sklearn_regressor_checks and not test_sklearn_classifier_check and not test_parallel_custom_metric and not test_parallel_custom_function and not test_parallel_custom_transformer and not test_get_n_jobs' I: pybuild base:311: cd /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build; python3.13 -m pytest -k ' not test_sklearn_regressor_checks and not test_sklearn_classifier_check and not test_parallel_custom_metric and not test_parallel_custom_function and not test_parallel_custom_transformer and not test_get_n_jobs' ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 @@ -911,9 +986,45 @@ tests/test_examples.py ..... [ 12%] tests/test_fitness.py .... [ 20%] tests/test_functions.py .. [ 25%] -tests/test_genetic.py ................................... [ 97%] +tests/test_genetic.py ...........................F....... [ 97%] tests/test_utils.py . [100%] +=================================== FAILURES =================================== +__________________________ test_transformer_iterable ___________________________ + + def test_transformer_iterable(): + """Check that the transformer is iterable""" + + random_state = check_random_state(415) + X = np.reshape(random_state.uniform(size=50), (5, 10)) + y = random_state.uniform(size=5) + function_set = ['add', 'sub', 'mul', 'div', 'sqrt', 'log', 'abs', 'neg', + 'inv', 'max', 'min'] + est = SymbolicTransformer(population_size=500, generations=2, + function_set=function_set, random_state=0) + + # Check unfitted + unfitted_len = len(est) + unfitted_iter = [gp.length_ for gp in est] + expected_iter = [] + + assert(unfitted_len == 0) + assert(unfitted_iter == expected_iter) + + # Check fitted + est.fit(X, y) + fitted_len = len(est) + fitted_iter = [gp.length_ for gp in est] + expected_iter = [8, 12, 2, 29, 9, 33, 9, 8, 4, 22] + + assert(fitted_len == 10) +> assert(fitted_iter == expected_iter) +E assert [8, 12, 1, 29, 9, 33, ...] == [8, 12, 2, 29, 9, 33, ...] +E +E At index 2 diff: 1 != 2 +E Use -v to get more diff + +tests/test_genetic.py:997: AssertionError =============================== warnings summary =============================== .pybuild/cpython3_3.13_gplearn/build/tests/test_estimator_checks.py::test_sklearn_transformer_checks /usr/lib/python3/dist-packages/sklearn/utils/estimator_checks.py:659: SkipTestWarning: pandas is not installed: not testing for input of type pandas.Series to class weight. @@ -924,241 +1035,25 @@ warnings.warn(str(exception), SkipTestWarning) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=========== 48 passed, 6 deselected, 2 warnings in 648.32s (0:10:48) =========== - create-stamp debian/debhelper-build-stamp - dh_testroot -O--buildsystem=pybuild - dh_prep -O--buildsystem=pybuild - dh_auto_install -O--buildsystem=pybuild -I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn -running install -/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. -!! - - ******************************************************************************** - Please avoid running ``setup.py`` directly. - Instead, use pypa/build, pypa/installer or other - standards-based tools. - - See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. - ******************************************************************************** - -!! - self.initialize_options() -running build -running build_py -running install_lib -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/genetic.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/fitness.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/functions.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/_program.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/_program.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/__init__.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/functions.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/genetic.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.12_gplearn/build/gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/_program.py to _program.cpython-312.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/functions.py to functions.cpython-312.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/genetic.py to genetic.cpython-312.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/utils.py to utils.cpython-312.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn/fitness.py to fitness.cpython-312.pyc -running install_egg_info -running egg_info -creating gplearn.egg-info -writing gplearn.egg-info/PKG-INFO -writing dependency_links to gplearn.egg-info/dependency_links.txt -writing requirements to gplearn.egg-info/requires.txt -writing top-level names to gplearn.egg-info/top_level.txt -writing manifest file 'gplearn.egg-info/SOURCES.txt' -reading manifest file 'gplearn.egg-info/SOURCES.txt' -reading manifest template 'MANIFEST.in' -adding license file 'LICENSE' -writing manifest file 'gplearn.egg-info/SOURCES.txt' -Copying gplearn.egg-info to /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.12/dist-packages/gplearn-0.4.2.egg-info -Skipping SOURCES.txt -running install_scripts -I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn -running install -/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. -!! - - ******************************************************************************** - Please avoid running ``setup.py`` directly. - Instead, use pypa/build, pypa/installer or other - standards-based tools. - - See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. - ******************************************************************************** - -!! - self.initialize_options() -running build -running build_py -running install_lib -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -creating /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/_program.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/genetic.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/functions.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/fitness.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__pycache__ -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/_program.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/__init__.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/functions.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/genetic.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/utils.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -copying /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build/gplearn/fitness.py -> /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/_program.py to _program.cpython-313.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/functions.py to functions.cpython-313.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/genetic.py to genetic.cpython-313.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/utils.py to utils.cpython-313.pyc -byte-compiling /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn/fitness.py to fitness.cpython-313.pyc -running install_egg_info -running egg_info -writing gplearn.egg-info/PKG-INFO -writing dependency_links to gplearn.egg-info/dependency_links.txt -writing requirements to gplearn.egg-info/requires.txt -writing top-level names to gplearn.egg-info/top_level.txt -reading manifest file 'gplearn.egg-info/SOURCES.txt' -reading manifest template 'MANIFEST.in' -adding license file 'LICENSE' -writing manifest file 'gplearn.egg-info/SOURCES.txt' -Copying gplearn.egg-info to /build/reproducible-path/python-gplearn-0.4.2/debian/python3-gplearn/usr/lib/python3.13/dist-packages/gplearn-0.4.2.egg-info -Skipping SOURCES.txt -running install_scripts - debian/rules override_dh_installdocs -make[1]: Entering directory '/build/reproducible-path/python-gplearn-0.4.2' -https_proxy='127.0.0.1:9' http_proxy='127.0.0.1:9' sphinx-build -b html doc build/sphinx/html -Running Sphinx v8.1.3 -WARNING: Calling get_html_theme_path is deprecated. If you are calling it to define html_theme_path, you are safe to remove that code. -loading translations [en]... done -making output directory... done -WARNING: favicon file 'favicon.ico' does not exist -Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. -[autosummary] generating autosummary for: advanced.rst, changelog.rst, contributing.rst, examples.rst, index.rst, installation.rst, intro.rst, reference.rst -loading intersphinx inventory 'python' from http://docs.python.org/objects.inv ... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -building [mo]: targets for 0 po files that are out of date -writing output... -building [html]: targets for 8 source files that are out of date -updating environment: [new config] 8 added, 0 changed, 0 removed -reading sources... [ 12%] advanced -reading sources... [ 25%] changelog -reading sources... [ 38%] contributing -reading sources... [ 50%] examples -reading sources... [ 62%] index -reading sources... [ 75%] installation -reading sources... [ 88%] intro -reading sources... [100%] reference - -looking for now-outdated files... none found -pickling environment... done -checking consistency... done -preparing documents... done -copying assets... -copying static files... -Writing evaluated template result to /build/reproducible-path/python-gplearn-0.4.2/build/sphinx/html/_static/language_data.js -Writing evaluated template result to /build/reproducible-path/python-gplearn-0.4.2/build/sphinx/html/_static/basic.css -Writing evaluated template result to /build/reproducible-path/python-gplearn-0.4.2/build/sphinx/html/_static/documentation_options.js -Writing evaluated template result to /build/reproducible-path/python-gplearn-0.4.2/build/sphinx/html/_static/js/versions.js -copying static files: done -copying extra files... -copying extra files: done -copying assets: done -writing output... [ 12%] advanced -writing output... [ 25%] changelog -writing output... [ 38%] contributing -writing output... [ 50%] examples -writing output... [ 62%] index -writing output... [ 75%] installation -writing output... [ 88%] intro -writing output... [100%] reference - -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests._MetadataRequester.get_metadata_routing:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests.RequestMethod.__get__..func:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests.RequestMethod.__get__..func:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests._MetadataRequester.get_metadata_routing:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests.RequestMethod.__get__..func:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests.RequestMethod.__get__..func:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests._MetadataRequester.get_metadata_routing:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._metadata_requests.RequestMethod.__get__..func:4: WARNING: undefined label: 'metadata_routing' [ref.ref] -/build/reproducible-path/python-gplearn-0.4.2/gplearn/genetic.py:docstring of sklearn.utils._set_output._SetOutputMixin.set_output:4: WARNING: undefined label: 'sphx_glr_auto_examples_miscellaneous_plot_set_output.py' [ref.ref] -generating indices... genindex done -highlighting module code... [ 17%] gplearn.fitness -highlighting module code... [ 33%] gplearn.functions -highlighting module code... [ 50%] gplearn.genetic -highlighting module code... [ 67%] sklearn.base -highlighting module code... [ 83%] sklearn.utils._metadata_requests -highlighting module code... [100%] sklearn.utils._set_output - -writing additional pages... search done -copying images... [ 7%] images/parallel.png -copying images... [ 14%] images/ex3_fig1.png -copying images... [ 21%] images/ex1_fig1.png -copying images... [ 29%] images/ex1_fig2.png -copying images... [ 36%] images/ex1_child.png -copying images... [ 43%] images/ex1_fig3.png -copying images... [ 50%] images/ex4_comparison.png -copying images... [ 57%] images/ex4_tree.png -copying images... [ 64%] logos/gplearn-wide.png -copying images... [ 71%] images/syntax_tree.png -copying images... [ 79%] images/gp_ops_crossover.png -copying images... [ 86%] images/gp_ops_subtree.png -copying images... [ 93%] images/gp_ops_hoist.png -copying images... [100%] images/gp_ops_point.png - -dumping search index in English (code: en)... done -dumping object inventory... done -build succeeded, 12 warnings. - -The HTML pages are in build/sphinx/html. -# Replace tex-mml-chtml.js URLs with local paths -find -type f -name "*.html" -exec sed -i 's|https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js|/usr/share/nodejs/mathjax-full/components/src/tex-mml-chtml/tex-mml-chtml.js|g' {} + -dh_installdocs -ppython-gplearn-doc --doc-main-package=python-gplearn-doc build/sphinx/html -dh_installdocs -dh_installdocs: warning: Cannot auto-detect main package for python-gplearn-doc. If the default is wrong, please use --doc-main-package -make[1]: Leaving directory '/build/reproducible-path/python-gplearn-0.4.2' - dh_sphinxdoc -O--buildsystem=pybuild - dh_installchangelogs -O--buildsystem=pybuild - dh_python3 -O--buildsystem=pybuild - dh_installsystemduser -O--buildsystem=pybuild - dh_perl -O--buildsystem=pybuild - dh_link -O--buildsystem=pybuild - dh_strip_nondeterminism -O--buildsystem=pybuild - dh_compress -O--buildsystem=pybuild - dh_fixperms -O--buildsystem=pybuild - dh_missing -O--buildsystem=pybuild - dh_installdeb -O--buildsystem=pybuild - dh_gencontrol -O--buildsystem=pybuild -dpkg-gencontrol: warning: package python-gplearn-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - dh_md5sums -O--buildsystem=pybuild - dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-gplearn' in '../python3-gplearn_0.4.2-3_all.deb'. -dpkg-deb: building package 'python-gplearn-doc' in '../python-gplearn-doc_0.4.2-3_all.deb'. - dpkg-genbuildinfo --build=binary -O../python-gplearn_0.4.2-3_amd64.buildinfo - dpkg-genchanges --build=binary -O../python-gplearn_0.4.2-3_amd64.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-source: info: using options from python-gplearn-0.4.2/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload +=========================== short test summary info ============================ +FAILED tests/test_genetic.py::test_transformer_iterable - assert [8, 12, 1, 2... +====== 1 failed, 47 passed, 6 deselected, 2 warnings in 205.95s (0:03:25) ====== +E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/python-gplearn-0.4.2/.pybuild/cpython3_3.13_gplearn/build; python3.13 -m pytest -k ' not test_sklearn_regressor_checks and not test_sklearn_classifier_check and not test_parallel_custom_metric and not test_parallel_custom_function and not test_parallel_custom_transformer and not test_get_n_jobs' +dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13 +make: *** [debian/rules:13: binary] Error 25 +dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Fri Mar 6 17:03:30 UTC 2026 +Filesystem Size Used Avail Use% Mounted on +tmpfs 40G 0 40G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/742230/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/896280 and its subdirectories -I: Current time: Fri Jan 31 22:32:10 -12 2025 -I: pbuilder-time-stamp: 1738405930 +I: removing directory /srv/workspace/pbuilder/742230 and its subdirectories