Diff of the two buildlogs: -- --- b1/build.log 2025-03-20 10:35:09.073558866 +0000 +++ b2/build.log 2025-03-20 10:41:44.295872302 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 22 04:55:11 -12 2026 -I: pbuilder-time-stamp: 1776876911 +I: Current time: Fri Mar 21 00:35:12 +14 2025 +I: pbuilder-time-stamp: 1742466912 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/413335/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 20 10:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f104e88e61404374b522ba5119bb449b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='413335' - PS1='# ' - PS2='> ' + INVOCATION_ID=583c7cc4076d41f9b89221e24a2d1133 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3650807 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yatFzXRv/pbuilderrc_1XHm --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yatFzXRv/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yatFzXRv/pbuilderrc_8CLN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yatFzXRv/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/413335/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 71 http://deb.debian.org/debian unstable/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 43.2 MB in 3s (17.3 MB/s) +Fetched 43.2 MB in 3s (12.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19784 files and directories currently installed.) @@ -503,7 +535,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -529,7 +565,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.6s) +-- Configuring done (3.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -544,7 +580,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -556,16 +592,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -[ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 10%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -610,119 +646,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (13 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (1 ms) +[ OK ] RaconInitializeTest.WindowLengthError (11 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (27 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) -[----------] 5 tests from RaconInitializeTest (13 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (36 ms) +[----------] 5 tests from RaconInitializeTest (102 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000501 s -[racon::Polisher::initialize] loaded sequences 0.033363 s -[racon::Polisher::initialize] loaded overlaps 0.000637 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.020897 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030393 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039864 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048779 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059140 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068897 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.092542 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.104175 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.113740 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.122135 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.133780 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.143853 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.154806 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.160329 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.169705 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.192719 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.200342 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.209612 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.222138 s [racon::Polisher::initialize] aligning overlaps [====================] 0.230311 s -[racon::Polisher::initialize] transformed data into windows 0.001704 s -[racon::Polisher::polish] generating consensus [=> ] 0.018272 s [racon::Polisher::polish] generating consensus [==> ] 0.034237 s [racon::Polisher::polish] generating consensus [===> ] 0.047839 s [racon::Polisher::polish] generating consensus [====> ] 0.058693 s [racon::Polisher::polish] generating consensus [=====> ] 0.066780 s [racon::Polisher::polish] generating consensus [======> ] 0.074569 s [racon::Polisher::polish] generating consensus [=======> ] 0.082149 s [racon::Polisher::polish] generating consensus [========> ] 0.090752 s [racon::Polisher::polish] generating consensus [=========> ] 0.101962 s [racon::Polisher::polish] generating consensus [==========> ] 0.117403 s [racon::Polisher::polish] generating consensus [===========> ] 0.148311 s [racon::Polisher::polish] generating consensus [============> ] 0.168682 s [racon::Polisher::polish] generating consensus [=============> ] 0.195391 s [racon::Polisher::polish] generating consensus [==============> ] 0.226495 s [racon::Polisher::polish] generating consensus [===============> ] 0.248641 s [racon::Polisher::polish] generating consensus [================> ] 0.267171 s [racon::Polisher::polish] generating consensus [=================> ] 0.289718 s [racon::Polisher::polish] generating consensus [==================> ] 0.303636 s [racon::Polisher::polish] generating consensus [===================>] 0.318823 s [racon::Polisher::polish] generating consensus [====================] 0.394366 s -[racon::Polisher::] total = 0.675709 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (691 ms) +[racon::Polisher::initialize] loaded target sequences 0.000977 s +[racon::Polisher::initialize] loaded sequences 0.131814 s +[racon::Polisher::initialize] loaded overlaps 0.000503 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.151137 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.203127 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.279134 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.331235 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.403146 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.451218 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.595133 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.671072 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.723150 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.775142 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.843155 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.895095 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.895095 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.895095 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.895103 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.895206 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.911358 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.911394 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.923134 s [racon::Polisher::initialize] aligning overlaps [====================] 0.939104 s +[racon::Polisher::initialize] transformed data into windows 0.002820 s +[racon::Polisher::polish] generating consensus [=> ] 0.129429 s [racon::Polisher::polish] generating consensus [==> ] 0.253034 s [racon::Polisher::polish] generating consensus [===> ] 0.381087 s [racon::Polisher::polish] generating consensus [====> ] 0.457775 s [racon::Polisher::polish] generating consensus [=====> ] 0.485752 s [racon::Polisher::polish] generating consensus [======> ] 0.565623 s [racon::Polisher::polish] generating consensus [=======> ] 0.585683 s [racon::Polisher::polish] generating consensus [========> ] 0.637659 s [racon::Polisher::polish] generating consensus [=========> ] 0.665073 s [racon::Polisher::polish] generating consensus [==========> ] 0.757029 s [racon::Polisher::polish] generating consensus [===========> ] 0.885100 s [racon::Polisher::polish] generating consensus [============> ] 0.993664 s [racon::Polisher::polish] generating consensus [=============> ] 1.073746 s [racon::Polisher::polish] generating consensus [==============> ] 1.269627 s [racon::Polisher::polish] generating consensus [===============> ] 1.329700 s [racon::Polisher::polish] generating consensus [================> ] 1.369758 s [racon::Polisher::polish] generating consensus [=================> ] 1.457048 s [racon::Polisher::polish] generating consensus [==================> ] 1.498308 s [racon::Polisher::polish] generating consensus [===================>] 1.499059 s [racon::Polisher::polish] generating consensus [====================] 1.529724 s +[racon::Polisher::] total = 2.714078 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (2797 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000414 s -[racon::Polisher::initialize] loaded sequences 0.013050 s -[racon::Polisher::initialize] loaded overlaps 0.000278 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017245 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026078 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038144 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046531 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057306 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067016 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090476 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102033 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.111530 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.119900 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.131528 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.141571 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.152454 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.157895 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.165288 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181092 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.186678 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.195595 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.207915 s [racon::Polisher::initialize] aligning overlaps [====================] 0.223244 s -[racon::Polisher::initialize] transformed data into windows 0.000458 s -[racon::Polisher::polish] generating consensus [=> ] 0.020449 s [racon::Polisher::polish] generating consensus [==> ] 0.054455 s [racon::Polisher::polish] generating consensus [===> ] 0.073634 s [racon::Polisher::polish] generating consensus [====> ] 0.086294 s [racon::Polisher::polish] generating consensus [=====> ] 0.094377 s [racon::Polisher::polish] generating consensus [======> ] 0.105927 s [racon::Polisher::polish] generating consensus [=======> ] 0.116610 s [racon::Polisher::polish] generating consensus [========> ] 0.125385 s [racon::Polisher::polish] generating consensus [=========> ] 0.136624 s [racon::Polisher::polish] generating consensus [==========> ] 0.157235 s [racon::Polisher::polish] generating consensus [===========> ] 0.190070 s [racon::Polisher::polish] generating consensus [============> ] 0.218669 s [racon::Polisher::polish] generating consensus [=============> ] 0.256315 s [racon::Polisher::polish] generating consensus [==============> ] 0.294782 s [racon::Polisher::polish] generating consensus [===============> ] 0.326075 s [racon::Polisher::polish] generating consensus [================> ] 0.356719 s [racon::Polisher::polish] generating consensus [=================> ] 0.388094 s [racon::Polisher::polish] generating consensus [==================> ] 0.412824 s [racon::Polisher::polish] generating consensus [===================>] 0.560207 s [racon::Polisher::polish] generating consensus [====================] 0.622361 s -[racon::Polisher::] total = 0.872556 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (888 ms) +[racon::Polisher::initialize] loaded target sequences 0.000801 s +[racon::Polisher::initialize] loaded sequences 0.055874 s +[racon::Polisher::initialize] loaded overlaps 0.000447 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.076785 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.116471 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.152476 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.200471 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.232932 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.265068 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.368903 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.409071 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.445241 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.481024 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.529079 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.564808 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.600904 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.621015 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.671505 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.688482 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.712479 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.724979 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.725013 s [racon::Polisher::initialize] aligning overlaps [====================] 0.737996 s +[racon::Polisher::initialize] transformed data into windows 0.000649 s +[racon::Polisher::polish] generating consensus [=> ] 0.117782 s [racon::Polisher::polish] generating consensus [==> ] 0.276579 s [racon::Polisher::polish] generating consensus [===> ] 0.389217 s [racon::Polisher::polish] generating consensus [====> ] 0.489676 s [racon::Polisher::polish] generating consensus [=====> ] 0.521544 s [racon::Polisher::polish] generating consensus [======> ] 0.557694 s [racon::Polisher::polish] generating consensus [=======> ] 0.609028 s [racon::Polisher::polish] generating consensus [========> ] 0.677765 s [racon::Polisher::polish] generating consensus [=========> ] 0.761748 s [racon::Polisher::polish] generating consensus [==========> ] 0.877736 s [racon::Polisher::polish] generating consensus [===========> ] 1.001756 s [racon::Polisher::polish] generating consensus [============> ] 1.192396 s [racon::Polisher::polish] generating consensus [=============> ] 1.421139 s [racon::Polisher::polish] generating consensus [==============> ] 1.421206 s [racon::Polisher::polish] generating consensus [===============> ] 1.421241 s [racon::Polisher::polish] generating consensus [================> ] 1.494486 s [racon::Polisher::polish] generating consensus [=================> ] 1.518390 s [racon::Polisher::polish] generating consensus [==================> ] 1.519270 s [racon::Polisher::polish] generating consensus [===================>] 1.606376 s [racon::Polisher::polish] generating consensus [====================] 1.699342 s +[racon::Polisher::] total = 2.553670 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (2623 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000408 s -[racon::Polisher::initialize] loaded sequences 0.029547 s -[racon::Polisher::initialize] loaded overlaps 0.018507 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.002409 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002507 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002613 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002685 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002810 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002981 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003115 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003247 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003379 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003510 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003640 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003770 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003899 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004028 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004164 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004292 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004421 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004553 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004681 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004815 s -[racon::Polisher::initialize] transformed data into windows 0.001525 s -[racon::Polisher::polish] generating consensus [=> ] 0.018898 s [racon::Polisher::polish] generating consensus [==> ] 0.033854 s [racon::Polisher::polish] generating consensus [===> ] 0.047531 s [racon::Polisher::polish] generating consensus [====> ] 0.059245 s [racon::Polisher::polish] generating consensus [=====> ] 0.066523 s [racon::Polisher::polish] generating consensus [======> ] 0.073841 s [racon::Polisher::polish] generating consensus [=======> ] 0.081682 s [racon::Polisher::polish] generating consensus [========> ] 0.090217 s [racon::Polisher::polish] generating consensus [=========> ] 0.099851 s [racon::Polisher::polish] generating consensus [==========> ] 0.113842 s [racon::Polisher::polish] generating consensus [===========> ] 0.132828 s [racon::Polisher::polish] generating consensus [============> ] 0.156299 s [racon::Polisher::polish] generating consensus [=============> ] 0.189083 s [racon::Polisher::polish] generating consensus [==============> ] 0.222099 s [racon::Polisher::polish] generating consensus [===============> ] 0.252025 s [racon::Polisher::polish] generating consensus [================> ] 0.271466 s [racon::Polisher::polish] generating consensus [=================> ] 0.297023 s [racon::Polisher::polish] generating consensus [==================> ] 0.311330 s [racon::Polisher::polish] generating consensus [===================>] 0.324670 s [racon::Polisher::polish] generating consensus [====================] 0.388244 s -[racon::Polisher::] total = 0.456997 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (470 ms) +[racon::Polisher::initialize] loaded target sequences 0.004574 s +[racon::Polisher::initialize] loaded sequences 0.126507 s +[racon::Polisher::initialize] loaded overlaps 0.077490 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.027813 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.027850 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.027866 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.027885 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.027901 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.027918 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.027934 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.027951 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.027966 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.027981 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.027996 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.028010 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.028025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.028040 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.028054 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.028069 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.028084 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.028099 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.028114 s [racon::Polisher::initialize] aligning overlaps [====================] 0.028128 s +[racon::Polisher::initialize] transformed data into windows 0.003101 s +[racon::Polisher::polish] generating consensus [=> ] 0.097169 s [racon::Polisher::polish] generating consensus [==> ] 0.181006 s [racon::Polisher::polish] generating consensus [===> ] 0.253009 s [racon::Polisher::polish] generating consensus [====> ] 0.305187 s [racon::Polisher::polish] generating consensus [=====> ] 0.341016 s [racon::Polisher::polish] generating consensus [======> ] 0.389032 s [racon::Polisher::polish] generating consensus [=======> ] 0.424971 s [racon::Polisher::polish] generating consensus [========> ] 0.461105 s [racon::Polisher::polish] generating consensus [=========> ] 0.512996 s [racon::Polisher::polish] generating consensus [==========> ] 0.572690 s [racon::Polisher::polish] generating consensus [===========> ] 0.676657 s [racon::Polisher::polish] generating consensus [============> ] 0.805025 s [racon::Polisher::polish] generating consensus [=============> ] 0.980930 s [racon::Polisher::polish] generating consensus [==============> ] 1.148986 s [racon::Polisher::polish] generating consensus [===============> ] 1.261102 s [racon::Polisher::polish] generating consensus [================> ] 1.345132 s [racon::Polisher::polish] generating consensus [=================> ] 1.480988 s [racon::Polisher::polish] generating consensus [==================> ] 1.552845 s [racon::Polisher::polish] generating consensus [===================>] 1.618356 s [racon::Polisher::polish] generating consensus [====================] 1.942014 s +[racon::Polisher::] total = 2.248620 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (2305 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000417 s -[racon::Polisher::initialize] loaded sequences 0.012542 s -[racon::Polisher::initialize] loaded overlaps 0.016932 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.001872 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002069 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002204 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002335 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002470 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002605 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002734 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002868 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003001 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003131 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003260 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003390 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003448 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003464 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003478 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003491 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003570 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003583 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003657 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003671 s -[racon::Polisher::initialize] transformed data into windows 0.000392 s -[racon::Polisher::polish] generating consensus [=> ] 0.019137 s [racon::Polisher::polish] generating consensus [==> ] 0.054874 s [racon::Polisher::polish] generating consensus [===> ] 0.073855 s [racon::Polisher::polish] generating consensus [====> ] 0.088584 s [racon::Polisher::polish] generating consensus [=====> ] 0.098635 s [racon::Polisher::polish] generating consensus [======> ] 0.108267 s [racon::Polisher::polish] generating consensus [=======> ] 0.119006 s [racon::Polisher::polish] generating consensus [========> ] 0.130979 s [racon::Polisher::polish] generating consensus [=========> ] 0.143078 s [racon::Polisher::polish] generating consensus [==========> ] 0.161405 s [racon::Polisher::polish] generating consensus [===========> ] 0.183715 s [racon::Polisher::polish] generating consensus [============> ] 0.212081 s [racon::Polisher::polish] generating consensus [=============> ] 0.248321 s [racon::Polisher::polish] generating consensus [==============> ] 0.284342 s [racon::Polisher::polish] generating consensus [===============> ] 0.318635 s [racon::Polisher::polish] generating consensus [================> ] 0.347635 s [racon::Polisher::polish] generating consensus [=================> ] 0.376934 s [racon::Polisher::polish] generating consensus [==================> ] 0.394993 s [racon::Polisher::polish] generating consensus [===================>] 0.412687 s [racon::Polisher::polish] generating consensus [====================] 0.490861 s -[racon::Polisher::] total = 0.532166 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (534 ms) +[racon::Polisher::initialize] loaded target sequences 0.005223 s +[racon::Polisher::initialize] loaded sequences 0.056831 s +[racon::Polisher::initialize] loaded overlaps 0.094818 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.015781 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.016661 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.017443 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.018183 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.018397 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.018414 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.018428 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.018443 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.018457 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.018470 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.018484 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.018498 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.018512 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.018527 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.018542 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.018557 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.018571 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.018584 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.018597 s [racon::Polisher::initialize] aligning overlaps [====================] 0.018612 s +[racon::Polisher::initialize] transformed data into windows 0.000825 s +[racon::Polisher::polish] generating consensus [=> ] 0.124026 s [racon::Polisher::polish] generating consensus [==> ] 0.204217 s [racon::Polisher::polish] generating consensus [===> ] 0.300282 s [racon::Polisher::polish] generating consensus [====> ] 0.392928 s [racon::Polisher::polish] generating consensus [=====> ] 0.440805 s [racon::Polisher::polish] generating consensus [======> ] 0.492658 s [racon::Polisher::polish] generating consensus [=======> ] 0.552611 s [racon::Polisher::polish] generating consensus [========> ] 0.606062 s [racon::Polisher::polish] generating consensus [=========> ] 0.664382 s [racon::Polisher::polish] generating consensus [==========> ] 0.760593 s [racon::Polisher::polish] generating consensus [===========> ] 0.908241 s [racon::Polisher::polish] generating consensus [============> ] 1.043814 s [racon::Polisher::polish] generating consensus [=============> ] 1.092341 s [racon::Polisher::polish] generating consensus [==============> ] 1.280252 s [racon::Polisher::polish] generating consensus [===============> ] 1.353730 s [racon::Polisher::polish] generating consensus [================> ] 1.416174 s [racon::Polisher::polish] generating consensus [=================> ] 1.481700 s [racon::Polisher::polish] generating consensus [==================> ] 1.484037 s [racon::Polisher::polish] generating consensus [===================>] 1.484782 s [racon::Polisher::polish] generating consensus [====================] 1.544396 s +[racon::Polisher::] total = 1.741102 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1754 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000447 s -[racon::Polisher::initialize] loaded sequences 0.029498 s -[racon::Polisher::initialize] loaded overlaps 0.000277 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017956 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026864 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038567 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046971 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057718 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067452 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090921 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102536 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112025 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120367 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132031 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142120 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153143 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.158658 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166087 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.182787 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.188333 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.197432 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.209855 s [racon::Polisher::initialize] aligning overlaps [====================] 0.225779 s -[racon::Polisher::initialize] transformed data into windows 0.001554 s -[racon::Polisher::polish] generating consensus [=> ] 0.059511 s [racon::Polisher::polish] generating consensus [==> ] 0.059537 s [racon::Polisher::polish] generating consensus [===> ] 0.115006 s [racon::Polisher::polish] generating consensus [====> ] 0.115049 s [racon::Polisher::polish] generating consensus [=====> ] 0.135263 s [racon::Polisher::polish] generating consensus [======> ] 0.135289 s [racon::Polisher::polish] generating consensus [=======> ] 0.163817 s [racon::Polisher::polish] generating consensus [========> ] 0.163860 s [racon::Polisher::polish] generating consensus [=========> ] 0.191679 s [racon::Polisher::polish] generating consensus [==========> ] 0.192667 s [racon::Polisher::polish] generating consensus [===========> ] 0.257085 s [racon::Polisher::polish] generating consensus [============> ] 0.333234 s [racon::Polisher::polish] generating consensus [=============> ] 0.358230 s [racon::Polisher::polish] generating consensus [==============> ] 0.446663 s [racon::Polisher::polish] generating consensus [===============> ] 0.446936 s [racon::Polisher::polish] generating consensus [================> ] 0.511797 s [racon::Polisher::polish] generating consensus [=================> ] 0.522411 s [racon::Polisher::polish] generating consensus [==================> ] 0.563696 s [racon::Polisher::polish] generating consensus [===================>] 0.571995 s [racon::Polisher::polish] generating consensus [====================] 0.687312 s -[racon::Polisher::] total = 0.954952 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1018 ms) +[racon::Polisher::initialize] loaded target sequences 0.000849 s +[racon::Polisher::initialize] loaded sequences 0.127792 s +[racon::Polisher::initialize] loaded overlaps 0.000463 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.085383 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.125224 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.177221 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.217293 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.261217 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.301201 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.401872 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.449476 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.493394 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.565698 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.597769 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.653753 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.681711 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.697674 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.753252 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.771195 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.787193 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.821200 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.857195 s [racon::Polisher::initialize] aligning overlaps [====================] 0.857204 s +[racon::Polisher::initialize] transformed data into windows 0.002899 s +[racon::Polisher::polish] generating consensus [=> ] 0.345004 s [racon::Polisher::polish] generating consensus [==> ] 0.348985 s [racon::Polisher::polish] generating consensus [===> ] 0.661004 s [racon::Polisher::polish] generating consensus [====> ] 0.661113 s [racon::Polisher::polish] generating consensus [=====> ] 0.825011 s [racon::Polisher::polish] generating consensus [======> ] 0.825076 s [racon::Polisher::polish] generating consensus [=======> ] 0.965007 s [racon::Polisher::polish] generating consensus [========> ] 0.965098 s [racon::Polisher::polish] generating consensus [=========> ] 1.185109 s [racon::Polisher::polish] generating consensus [==========> ] 1.185109 s [racon::Polisher::polish] generating consensus [===========> ] 1.597009 s [racon::Polisher::polish] generating consensus [============> ] 1.597009 s [racon::Polisher::polish] generating consensus [=============> ] 2.029647 s [racon::Polisher::polish] generating consensus [==============> ] 2.030426 s [racon::Polisher::polish] generating consensus [===============> ] 2.213488 s [racon::Polisher::polish] generating consensus [================> ] 2.214286 s [racon::Polisher::polish] generating consensus [=================> ] 2.365568 s [racon::Polisher::polish] generating consensus [==================> ] 2.366393 s [racon::Polisher::polish] generating consensus [===================>] 2.593099 s [racon::Polisher::polish] generating consensus [====================] 2.929033 s +[racon::Polisher::] total = 3.982423 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (4102 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000401 s -[racon::Polisher::initialize] loaded sequences 0.029329 s -[racon::Polisher::initialize] loaded overlaps 0.000271 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017718 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.027389 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.040284 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048430 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059830 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.070215 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.094495 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.106420 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.116226 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.124816 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.136834 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.147198 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.158434 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.164112 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.171748 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.182508 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187995 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196996 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.210807 s [racon::Polisher::initialize] aligning overlaps [====================] 0.224621 s -[racon::Polisher::initialize] transformed data into windows 0.001613 s -[racon::Polisher::polish] generating consensus [=> ] 0.017459 s [racon::Polisher::polish] generating consensus [==> ] 0.032239 s [racon::Polisher::polish] generating consensus [===> ] 0.045610 s [racon::Polisher::polish] generating consensus [====> ] 0.056237 s [racon::Polisher::polish] generating consensus [=====> ] 0.063048 s [racon::Polisher::polish] generating consensus [======> ] 0.070622 s [racon::Polisher::polish] generating consensus [=======> ] 0.078181 s [racon::Polisher::polish] generating consensus [========> ] 0.086377 s [racon::Polisher::polish] generating consensus [=========> ] 0.096950 s [racon::Polisher::polish] generating consensus [==========> ] 0.109744 s [racon::Polisher::polish] generating consensus [===========> ] 0.128607 s [racon::Polisher::polish] generating consensus [============> ] 0.152441 s [racon::Polisher::polish] generating consensus [=============> ] 0.184125 s [racon::Polisher::polish] generating consensus [==============> ] 0.214949 s [racon::Polisher::polish] generating consensus [===============> ] 0.239630 s [racon::Polisher::polish] generating consensus [================> ] 0.257081 s [racon::Polisher::polish] generating consensus [=================> ] 0.280977 s [racon::Polisher::polish] generating consensus [==================> ] 0.294826 s [racon::Polisher::polish] generating consensus [===================>] 0.308268 s [racon::Polisher::polish] generating consensus [====================] 0.382773 s -[racon::Polisher::] total = 0.648944 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (651 ms) +[racon::Polisher::initialize] loaded target sequences 0.000738 s +[racon::Polisher::initialize] loaded sequences 0.071838 s +[racon::Polisher::initialize] loaded overlaps 0.000640 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.057418 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.105473 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.156819 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.216905 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.253227 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.277123 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.313271 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.333336 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.409222 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.449342 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.481381 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.533200 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.565326 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.621338 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.669397 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.670064 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.677266 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.678083 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.709286 s [racon::Polisher::initialize] aligning overlaps [====================] 0.710156 s +[racon::Polisher::initialize] transformed data into windows 0.003482 s +[racon::Polisher::polish] generating consensus [=> ] 0.090889 s [racon::Polisher::polish] generating consensus [==> ] 0.186830 s [racon::Polisher::polish] generating consensus [===> ] 0.262773 s [racon::Polisher::polish] generating consensus [====> ] 0.286850 s [racon::Polisher::polish] generating consensus [=====> ] 0.314807 s [racon::Polisher::polish] generating consensus [======> ] 0.350774 s [racon::Polisher::polish] generating consensus [=======> ] 0.374893 s [racon::Polisher::polish] generating consensus [========> ] 0.414870 s [racon::Polisher::polish] generating consensus [=========> ] 0.460787 s [racon::Polisher::polish] generating consensus [==========> ] 0.522887 s [racon::Polisher::polish] generating consensus [===========> ] 0.622881 s [racon::Polisher::polish] generating consensus [============> ] 0.758824 s [racon::Polisher::polish] generating consensus [=============> ] 0.886754 s [racon::Polisher::polish] generating consensus [==============> ] 1.038876 s [racon::Polisher::polish] generating consensus [===============> ] 1.130846 s [racon::Polisher::polish] generating consensus [================> ] 1.230961 s [racon::Polisher::polish] generating consensus [=================> ] 1.350840 s [racon::Polisher::polish] generating consensus [==================> ] 1.430818 s [racon::Polisher::polish] generating consensus [===================>] 1.431371 s [racon::Polisher::polish] generating consensus [====================] 1.518845 s +[racon::Polisher::] total = 2.345769 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (2373 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.029259 s -[racon::Polisher::initialize] loaded sequences 0.029291 s -[racon::Polisher::initialize] loaded overlaps 0.006788 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019132 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.033816 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039294 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.049036 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058269 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068004 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.084503 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.093948 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.108561 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120472 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.133388 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.153430 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.167339 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183547 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194109 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.211331 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.221911 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.227073 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.239759 s [racon::Polisher::initialize] aligning overlaps [====================] 0.254997 s -[racon::Polisher::initialize] transformed data into windows 0.002845 s -[racon::Polisher::polish] generating consensus [=> ] 0.017050 s [racon::Polisher::polish] generating consensus [==> ] 0.033406 s [racon::Polisher::polish] generating consensus [===> ] 0.050344 s [racon::Polisher::polish] generating consensus [====> ] 0.051034 s [racon::Polisher::polish] generating consensus [=====> ] 0.061085 s [racon::Polisher::polish] generating consensus [======> ] 0.068679 s [racon::Polisher::polish] generating consensus [=======> ] 0.080162 s [racon::Polisher::polish] generating consensus [========> ] 0.082605 s [racon::Polisher::polish] generating consensus [=========> ] 0.102345 s [racon::Polisher::polish] generating consensus [==========> ] 0.111752 s [racon::Polisher::polish] generating consensus [===========> ] 0.119805 s [racon::Polisher::polish] generating consensus [============> ] 0.122834 s [racon::Polisher::polish] generating consensus [=============> ] 0.131885 s [racon::Polisher::polish] generating consensus [==============> ] 0.132216 s [racon::Polisher::polish] generating consensus [===============> ] 0.153628 s [racon::Polisher::polish] generating consensus [================> ] 0.153877 s [racon::Polisher::polish] generating consensus [=================> ] 0.192056 s [racon::Polisher::polish] generating consensus [==================> ] 0.208018 s [racon::Polisher::polish] generating consensus [===================>] 0.221538 s [racon::Polisher::polish] generating consensus [====================] 0.222508 s -[racon::Polisher::] total = 0.546209 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (548 ms) +[racon::Polisher::initialize] loaded target sequences 0.130904 s +[racon::Polisher::initialize] loaded sequences 0.077712 s +[racon::Polisher::initialize] loaded overlaps 0.040750 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.084087 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.140165 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.168095 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.224172 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.260113 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.296073 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.368086 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.403563 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.467564 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.515595 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.567588 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.659586 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.692661 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.728214 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.744168 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.783606 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.783639 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.803583 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.803617 s [racon::Polisher::initialize] aligning overlaps [====================] 0.836252 s +[racon::Polisher::initialize] transformed data into windows 0.011195 s +[racon::Polisher::polish] generating consensus [=> ] 0.087970 s [racon::Polisher::polish] generating consensus [==> ] 0.188095 s [racon::Polisher::polish] generating consensus [===> ] 0.280152 s [racon::Polisher::polish] generating consensus [====> ] 0.281283 s [racon::Polisher::polish] generating consensus [=====> ] 0.324154 s [racon::Polisher::polish] generating consensus [======> ] 0.352014 s [racon::Polisher::polish] generating consensus [=======> ] 0.388123 s [racon::Polisher::polish] generating consensus [========> ] 0.396114 s [racon::Polisher::polish] generating consensus [=========> ] 0.488359 s [racon::Polisher::polish] generating consensus [==========> ] 0.535994 s [racon::Polisher::polish] generating consensus [===========> ] 0.592003 s [racon::Polisher::polish] generating consensus [============> ] 0.600150 s [racon::Polisher::polish] generating consensus [=============> ] 0.656014 s [racon::Polisher::polish] generating consensus [==============> ] 0.657100 s [racon::Polisher::polish] generating consensus [===============> ] 0.764132 s [racon::Polisher::polish] generating consensus [================> ] 0.776042 s [racon::Polisher::polish] generating consensus [=================> ] 0.796027 s [racon::Polisher::polish] generating consensus [==================> ] 0.804088 s [racon::Polisher::polish] generating consensus [===================>] 0.804368 s [racon::Polisher::polish] generating consensus [====================] 0.811856 s +[racon::Polisher::] total = 1.911251 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1923 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.029309 s -[racon::Polisher::initialize] loaded sequences 0.029276 s -[racon::Polisher::initialize] loaded overlaps 0.006486 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.288739 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.475000 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.658819 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.908820 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.125065 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.277025 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.483359 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.748584 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.995411 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.239690 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.428295 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.695826 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.975799 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.227206 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.527313 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.808211 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.042185 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.340292 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.645264 s [racon::Polisher::initialize] aligning overlaps [====================] 4.852889 s -[racon::Polisher::initialize] transformed data into windows 0.044426 s -[racon::Polisher::polish] generating consensus [=> ] 0.714939 s [racon::Polisher::polish] generating consensus [==> ] 1.223638 s [racon::Polisher::polish] generating consensus [===> ] 1.755193 s [racon::Polisher::polish] generating consensus [====> ] 2.201578 s [racon::Polisher::polish] generating consensus [=====> ] 2.813996 s [racon::Polisher::polish] generating consensus [======> ] 3.393871 s [racon::Polisher::polish] generating consensus [=======> ] 3.975138 s [racon::Polisher::polish] generating consensus [========> ] 4.400017 s [racon::Polisher::polish] generating consensus [=========> ] 4.950018 s [racon::Polisher::polish] generating consensus [==========> ] 5.590208 s [racon::Polisher::polish] generating consensus [===========> ] 6.137241 s [racon::Polisher::polish] generating consensus [============> ] 6.712416 s [racon::Polisher::polish] generating consensus [=============> ] 7.209853 s [racon::Polisher::polish] generating consensus [==============> ] 7.751490 s [racon::Polisher::polish] generating consensus [===============> ] 8.375661 s [racon::Polisher::polish] generating consensus [================> ] 8.704537 s [racon::Polisher::polish] generating consensus [=================> ] 9.366449 s [racon::Polisher::polish] generating consensus [==================> ] 9.976402 s [racon::Polisher::polish] generating consensus [===================>] 10.563612 s [racon::Polisher::polish] generating consensus [====================] 10.894899 s -[racon::Polisher::] total = 15.860226 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (15862 ms) +[racon::Polisher::initialize] loaded target sequences 0.122806 s +[racon::Polisher::initialize] loaded sequences 0.122614 s +[racon::Polisher::initialize] loaded overlaps 0.035707 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.316869 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.054808 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.856985 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.952887 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.561923 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.900808 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.356804 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.930017 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.428854 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.173010 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.764960 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.429444 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.109470 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.764989 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.437046 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.060863 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.079538 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.748188 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.997078 s [racon::Polisher::initialize] aligning overlaps [====================] 13.191752 s +[racon::Polisher::initialize] transformed data into windows 0.135861 s +[racon::Polisher::polish] generating consensus [=> ] 3.263310 s [racon::Polisher::polish] generating consensus [==> ] 4.238760 s [racon::Polisher::polish] generating consensus [===> ] 6.007451 s [racon::Polisher::polish] generating consensus [====> ] 6.970011 s [racon::Polisher::polish] generating consensus [=====> ] 9.602752 s [racon::Polisher::polish] generating consensus [======> ] 11.122738 s [racon::Polisher::polish] generating consensus [=======> ] 12.683253 s [racon::Polisher::polish] generating consensus [========> ] 14.127513 s [racon::Polisher::polish] generating consensus [=========> ] 15.774737 s [racon::Polisher::polish] generating consensus [==========> ] 18.227071 s [racon::Polisher::polish] generating consensus [===========> ] 20.854860 s [racon::Polisher::polish] generating consensus [============> ] 22.351386 s [racon::Polisher::polish] generating consensus [=============> ] 24.402129 s [racon::Polisher::polish] generating consensus [==============> ] 26.006991 s [racon::Polisher::polish] generating consensus [===============> ] 27.626712 s [racon::Polisher::polish] generating consensus [================> ] 28.439578 s [racon::Polisher::polish] generating consensus [=================> ] 30.170777 s [racon::Polisher::polish] generating consensus [==================> ] 32.315514 s [racon::Polisher::polish] generating consensus [===================>] 32.654909 s [racon::Polisher::polish] generating consensus [====================] 33.015690 s +[racon::Polisher::] total = 46.628981 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (46643 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.012473 s -[racon::Polisher::initialize] loaded sequences 0.012541 s -[racon::Polisher::initialize] loaded overlaps 0.006552 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.283078 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.487573 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.682005 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.946434 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.176332 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.337022 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.554925 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.834898 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.092941 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.340518 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.527970 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.794369 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.064367 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.286027 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.597832 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.881679 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.198900 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.489091 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.768212 s [racon::Polisher::initialize] aligning overlaps [====================] 4.900216 s -[racon::Polisher::initialize] transformed data into windows 0.011889 s -[racon::Polisher::polish] generating consensus [=> ] 0.942370 s [racon::Polisher::polish] generating consensus [==> ] 1.659822 s [racon::Polisher::polish] generating consensus [===> ] 2.387199 s [racon::Polisher::polish] generating consensus [====> ] 2.934779 s [racon::Polisher::polish] generating consensus [=====> ] 3.615337 s [racon::Polisher::polish] generating consensus [======> ] 4.376409 s [racon::Polisher::polish] generating consensus [=======> ] 5.144941 s [racon::Polisher::polish] generating consensus [========> ] 5.729216 s [racon::Polisher::polish] generating consensus [=========> ] 6.467313 s [racon::Polisher::polish] generating consensus [==========> ] 7.340866 s [racon::Polisher::polish] generating consensus [===========> ] 8.120132 s [racon::Polisher::polish] generating consensus [============> ] 8.995282 s [racon::Polisher::polish] generating consensus [=============> ] 9.725252 s [racon::Polisher::polish] generating consensus [==============> ] 10.501113 s [racon::Polisher::polish] generating consensus [===============> ] 11.231834 s [racon::Polisher::polish] generating consensus [================> ] 11.659040 s [racon::Polisher::polish] generating consensus [=================> ] 12.601182 s [racon::Polisher::polish] generating consensus [==================> ] 13.453033 s [racon::Polisher::polish] generating consensus [===================>] 14.271246 s [racon::Polisher::polish] generating consensus [====================] 14.923976 s -[racon::Polisher::] total = 19.869242 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19872 ms) +[racon::Polisher::initialize] loaded target sequences 0.057844 s +[racon::Polisher::initialize] loaded sequences 0.030322 s +[racon::Polisher::initialize] loaded overlaps 0.015123 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.180310 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.996957 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.709712 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.776874 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.604268 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.316827 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.028922 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.000261 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.240854 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.848841 s [racon::Polisher::initialize] aligning overlaps [===========> ] 9.220221 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.720225 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.452216 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.980865 s [racon::Polisher::initialize] aligning overlaps [===============> ] 12.036258 s [racon::Polisher::initialize] aligning overlaps [================> ] 13.288301 s [racon::Polisher::initialize] aligning overlaps [=================> ] 14.056212 s [racon::Polisher::initialize] aligning overlaps [==================> ] 14.604215 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.936613 s [racon::Polisher::initialize] aligning overlaps [====================] 15.177528 s +[racon::Polisher::initialize] transformed data into windows 0.019743 s +[racon::Polisher::polish] generating consensus [=> ] 4.196236 s [racon::Polisher::polish] generating consensus [==> ] 7.737850 s [racon::Polisher::polish] generating consensus [===> ] 10.725110 s [racon::Polisher::polish] generating consensus [====> ] 12.430460 s [racon::Polisher::polish] generating consensus [=====> ] 14.793060 s [racon::Polisher::polish] generating consensus [======> ] 18.284872 s [racon::Polisher::polish] generating consensus [=======> ] 21.464262 s [racon::Polisher::polish] generating consensus [========> ] 23.304974 s [racon::Polisher::polish] generating consensus [=========> ] 25.132926 s [racon::Polisher::polish] generating consensus [==========> ] 28.080283 s [racon::Polisher::polish] generating consensus [===========> ] 30.408293 s [racon::Polisher::polish] generating consensus [============> ] 33.733090 s [racon::Polisher::polish] generating consensus [=============> ] 36.764224 s [racon::Polisher::polish] generating consensus [==============> ] 39.696273 s [racon::Polisher::polish] generating consensus [===============> ] 44.088239 s [racon::Polisher::polish] generating consensus [================> ] 45.612351 s [racon::Polisher::polish] generating consensus [=================> ] 47.948308 s [racon::Polisher::polish] generating consensus [==================> ] 48.725052 s [racon::Polisher::polish] generating consensus [===================>] 49.261596 s [racon::Polisher::polish] generating consensus [====================] 49.751785 s +[racon::Polisher::] total = 65.056684 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (65071 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.029458 s -[racon::Polisher::initialize] loaded sequences 0.029536 s -[racon::Polisher::initialize] loaded overlaps 0.006884 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.283744 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.469546 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.641390 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.889919 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.106778 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.258656 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.463650 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.728049 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.971612 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.215748 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.403501 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.670099 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.939657 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.168701 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.477493 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.761476 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.012006 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.280272 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.586192 s [racon::Polisher::initialize] aligning overlaps [====================] 4.822540 s -[racon::Polisher::initialize] transformed data into windows 0.043405 s -[racon::Polisher::polish] generating consensus [=> ] 0.700742 s [racon::Polisher::polish] generating consensus [==> ] 1.216169 s [racon::Polisher::polish] generating consensus [===> ] 1.767594 s [racon::Polisher::polish] generating consensus [====> ] 2.212850 s [racon::Polisher::polish] generating consensus [=====> ] 2.709990 s [racon::Polisher::polish] generating consensus [======> ] 3.283645 s [racon::Polisher::polish] generating consensus [=======> ] 3.860361 s [racon::Polisher::polish] generating consensus [========> ] 4.282953 s [racon::Polisher::polish] generating consensus [=========> ] 4.828830 s [racon::Polisher::polish] generating consensus [==========> ] 5.465089 s [racon::Polisher::polish] generating consensus [===========> ] 6.006438 s [racon::Polisher::polish] generating consensus [============> ] 6.578229 s [racon::Polisher::polish] generating consensus [=============> ] 7.072243 s [racon::Polisher::polish] generating consensus [==============> ] 7.610102 s [racon::Polisher::polish] generating consensus [===============> ] 8.191686 s [racon::Polisher::polish] generating consensus [================> ] 8.508396 s [racon::Polisher::polish] generating consensus [=================> ] 9.154728 s [racon::Polisher::polish] generating consensus [==================> ] 9.762554 s [racon::Polisher::polish] generating consensus [===================>] 10.350307 s [racon::Polisher::polish] generating consensus [====================] 11.037211 s -[racon::Polisher::] total = 15.970695 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (15973 ms) -[----------] 10 tests from RaconPolishingTest (56511 ms total) +[racon::Polisher::initialize] loaded target sequences 0.128701 s +[racon::Polisher::initialize] loaded sequences 0.129030 s +[racon::Polisher::initialize] loaded overlaps 0.031680 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.983978 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.383861 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.011879 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.711968 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.683385 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.388009 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.820037 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.336102 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.051375 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.710978 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.107840 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.731377 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.955335 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.451514 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.035016 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.535560 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.415944 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.067926 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.374184 s [racon::Polisher::initialize] aligning overlaps [====================] 12.559083 s +[racon::Polisher::initialize] transformed data into windows 0.100563 s +[racon::Polisher::polish] generating consensus [=> ] 2.836553 s [racon::Polisher::polish] generating consensus [==> ] 5.112776 s [racon::Polisher::polish] generating consensus [===> ] 7.084595 s [racon::Polisher::polish] generating consensus [====> ] 9.168624 s [racon::Polisher::polish] generating consensus [=====> ] 11.680555 s [racon::Polisher::polish] generating consensus [======> ] 13.368538 s [racon::Polisher::polish] generating consensus [=======> ] 15.809130 s [racon::Polisher::polish] generating consensus [========> ] 16.992541 s [racon::Polisher::polish] generating consensus [=========> ] 18.856526 s [racon::Polisher::polish] generating consensus [==========> ] 21.429126 s [racon::Polisher::polish] generating consensus [===========> ] 23.553295 s [racon::Polisher::polish] generating consensus [============> ] 24.817346 s [racon::Polisher::polish] generating consensus [=============> ] 27.004564 s [racon::Polisher::polish] generating consensus [==============> ] 28.968577 s [racon::Polisher::polish] generating consensus [===============> ] 31.237128 s [racon::Polisher::polish] generating consensus [================> ] 31.977210 s [racon::Polisher::polish] generating consensus [=================> ] 33.496645 s [racon::Polisher::polish] generating consensus [==================> ] 34.542047 s [racon::Polisher::polish] generating consensus [===================>] 35.553222 s [racon::Polisher::polish] generating consensus [====================] 36.081372 s +[racon::Polisher::] total = 49.037099 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (49059 ms) +[----------] 10 tests from RaconPolishingTest (178659 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (56525 ms total) +[==========] 15 tests from 2 test suites ran. (178762 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -764,12 +800,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3650807/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/413335 and its subdirectories -I: Current time: Wed Apr 22 04:58:07 -12 2026 -I: pbuilder-time-stamp: 1776877087 +I: removing directory /srv/workspace/pbuilder/3650807 and its subdirectories +I: Current time: Fri Mar 21 00:41:43 +14 2025 +I: pbuilder-time-stamp: 1742467303