Diff of the two buildlogs: -- --- b1/build.log 2025-03-06 10:41:54.618583686 +0000 +++ b2/build.log 2025-03-06 10:46:51.433265577 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 8 05:02:05 -12 2026 -I: pbuilder-time-stamp: 1775667725 +I: Current time: Fri Mar 7 00:41:57 +14 2025 +I: pbuilder-time-stamp: 1741257717 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/196678/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 6 10:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='63ca8d17c7de48d587ed5bb7d9a79a14' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='196678' - PS1='# ' - PS2='> ' + INVOCATION_ID=84b461e3b6a841a9b76f0f93f5f1d517 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2271232 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aMZ5ejds/pbuilderrc_4tQS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aMZ5ejds/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aMZ5ejds/pbuilderrc_Un6D --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aMZ5ejds/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/196678/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -285,7 +317,7 @@ Get: 154 http://deb.debian.org/debian unstable/main amd64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 155 http://deb.debian.org/debian unstable/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get: 156 http://deb.debian.org/debian unstable/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 69.7 MB in 16s (4413 kB/s) +Fetched 69.7 MB in 3s (25.4 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) @@ -804,8 +836,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Apr 8 17:04:17 UTC 2026. -Universal Time is now: Wed Apr 8 17:04:17 UTC 2026. +Local time is now: Thu Mar 6 10:44:22 UTC 2025. +Universal Time is now: Thu Mar 6 10:44:22 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ruby-minitest (5.25.4-2) ... @@ -944,7 +976,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -1023,38 +1059,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (1.806541) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (3.062645) - test: crb-blast should break input file into pieces. :.: (2.705783) - test: crb-blast should find reciprocals. : .: (0.747661) - test: crb-blast should get non reciprocal hits. : .: (0.544997) - test: crb-blast should load output should check if the databases exist. : .: (0.574727) - test: crb-blast should run blast should check if the databases exist yet. : .: (0.726630) - test: crb-blast should setup2 should run ok. : .: (0.917811) + test: crb-blast should add secondary hits. : .: (2.318046) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (2.638242) + test: crb-blast should break input file into pieces. :.: (2.083370) + test: crb-blast should find reciprocals. : .: (2.360997) + test: crb-blast should get non reciprocal hits. : .: (2.064861) + test: crb-blast should load output should check if the databases exist. : .: (2.304987) + test: crb-blast should run blast should check if the databases exist yet. : .: (2.626939) + test: crb-blast should setup2 should run ok. : .: (4.799078) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.016842) - test: crb-blast should run. : .: (0.809953) - test: crb-blast should work for query sequences with pipes. : .: (0.808337) + test: crb-blast should raise error when files don't exist. : .: (0.015714) + test: crb-blast should run. : .: (2.523836) + test: crb-blast should work for query sequences with pipes. : .: (2.278676) TestBinary: - test: crb-blast should run binary. : .: (0.150880) + test: crb-blast should run binary. : .: (0.881371) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (0.604121) - test: crb-blast should determine that the target is a protein sequence. : .: (0.861661) - test: crb-blast should find reciprocals. : .: (0.627775) - test: crb-blast should get number of reciprocals. : .: (0.634497) - test: crb-blast should get query results. : .: (0.674984) - test: crb-blast should load outputs. : .: (0.634733) - test: crb-blast should not find fake scaffold name. : .: (0.596780) - test: crb-blast should output all reciprocal hits. : .: (0.654215) - test: crb-blast should run blast. : .: (0.747915) - test: crb-blast should setup should run ok. : .: (0.618370) + test: crb-blast should check if contig has reciprocal hit. : .: (2.954985) + test: crb-blast should determine that the target is a protein sequence. : .: (3.284130) + test: crb-blast should find reciprocals. : .: (3.154125) + test: crb-blast should get number of reciprocals. : .: (3.546921) + test: crb-blast should get query results. : .: (3.743778) + test: crb-blast should load outputs. : .: (3.276357) + test: crb-blast should not find fake scaffold name. : .: (3.035359) + test: crb-blast should output all reciprocal hits. : .: (2.554884) + test: crb-blast should run blast. : .: (3.432152) + test: crb-blast should setup should run ok. : .: (3.142730) -Finished in 19.530781001 seconds. +Finished in 59.035212835 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -1.13 tests/s, 2.15 assertions/s +0.37 tests/s, 0.71 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1085,12 +1121,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2271232/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/196678 and its subdirectories -I: Current time: Wed Apr 8 05:04:53 -12 2026 -I: pbuilder-time-stamp: 1775667893 +I: removing directory /srv/workspace/pbuilder/2271232 and its subdirectories +I: Current time: Fri Mar 7 00:46:50 +14 2025 +I: pbuilder-time-stamp: 1741258010