Diff of the two buildlogs: -- --- b1/build.log 2025-04-13 20:20:25.490760628 +0000 +++ b2/build.log 2025-04-13 20:21:44.709046129 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 16 14:41:38 -12 2026 -I: pbuilder-time-stamp: 1778985698 +I: Current time: Mon Apr 14 10:20:28 +14 2025 +I: pbuilder-time-stamp: 1744575628 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1700568/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 13 20:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6e1b3f1c221d448e8449a8de8f717d56' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1700568' - PS1='# ' - PS2='> ' + INVOCATION_ID=89731282a1824a5185ff3cd81b311614 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2311990 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pgww7wyY/pbuilderrc_S2tV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pgww7wyY/b1 --logfile b1/build.log seaview_5.0.5-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pgww7wyY/pbuilderrc_cNWg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pgww7wyY/b2 --logfile b2/build.log seaview_5.0.5-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1700568/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -230,7 +262,7 @@ Get: 109 http://deb.debian.org/debian unstable/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libxft-dev amd64 2.3.6-1+b4 [73.2 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libxinerama-dev amd64 2:1.1.4-3+b4 [18.4 kB] -Fetched 70.1 MB in 12s (5920 kB/s) +Fetched 70.1 MB in 1s (70.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) @@ -689,7 +721,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seaview-5.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seaview_5.0.5-3_source.changes +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seaview-5.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seaview_5.0.5-3_source.changes dpkg-buildpackage: info: source package seaview dpkg-buildpackage: info: source version 1:5.0.5-3 dpkg-buildpackage: info: source distribution unstable @@ -706,7 +742,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seaview-5.0.5' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF seaview.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx @@ -719,71 +755,71 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treerecs_draw.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_SVG_Image.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/raa_acnuc.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/parser.c -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/md5.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/zsockr.c -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/misc_acnuc.c +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/dnapars.c +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/protpars.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/seq.c +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/phylip.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/lwl.c -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/bionj.c -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/phyml_util.c -csrc/phyml_util.c: In function 'Warn_And_Exit': -csrc/phyml_util.c:47:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 47 | fscanf(stdin,"%c",&c); - | ^~~~~~~~~~~~~~~~~~~~~ -csrc/dnapars.c: In function 'dnapars': -csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 1685 | fread(tree, L, 1, outtree); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/protpars.c: In function 'protpars': csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +csrc/dnapars.c: In function 'dnapars': +csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 1685 | fread(tree, L, 1, outtree); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +csrc/phyml_util.c: In function 'Warn_And_Exit': +csrc/phyml_util.c:47:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 47 | fscanf(stdin,"%c",&c); + | ^~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); @@ -811,6 +847,21 @@ trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1301 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +regions.cxx:291:26: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] + 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); + | ^~ ~~~~~ +In file included from /usr/include/stdio.h:970, + from seaview.h:3, + from regions.cxx:1: +In function 'int sprintf(char*, const char*, ...)', + inlined from 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)' at regions.cxx:291:10: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2794 | fread(utree, s, 1, in); @@ -832,21 +883,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -regions.cxx:291:26: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] - 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); - | ^~ ~~~~~ -In file included from /usr/include/stdio.h:970, - from seaview.h:3, - from regions.cxx:1: -In function 'int sprintf(char*, const char*, ...)', - inlined from 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)' at regions.cxx:291:10: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ align.cxx: In function 'char* get_opt_resname(int)': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); @@ -866,6 +902,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +seaview.cxx: In function 'void help_callback(Fl_Widget*, void*)': +seaview.cxx:3618:53: warning: '%s' directive argument is null [-Wformat-overflow=] + 3618 | "Help file %s\nnot found in PATH directories nor in current directory", help_file + | ^~ align.cxx: In function 'void delete_align_callback(Fl_Widget*, void*)': align.cxx:825:31: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1); @@ -960,6 +1000,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +xfmatpt.cxx: In function 'int really_close(FD_matpt*)': +xfmatpt.cxx:889:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] + 889 | free(matpt->seq1 + 1); + | ~~~~^~~~~~~~~~~~~~~~~ +xfmatpt.cxx:890:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] + 890 | free(matpt->seq2 + 1); + | ~~~~^~~~~~~~~~~~~~~~~ align.cxx: In function 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)': align.cxx:1345:42: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 1345 | sprintf(seqname[num], "S_%d", num); @@ -976,17 +1023,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -seaview.cxx: In function 'void help_callback(Fl_Widget*, void*)': -seaview.cxx:3618:53: warning: '%s' directive argument is null [-Wformat-overflow=] - 3618 | "Help file %s\nnot found in PATH directories nor in current directory", help_file - | ^~ -xfmatpt.cxx: In function 'int really_close(FD_matpt*)': -xfmatpt.cxx:889:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] - 889 | free(matpt->seq1 + 1); - | ~~~~^~~~~~~~~~~~~~~~~ -xfmatpt.cxx:890:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] - 890 | free(matpt->seq2 + 1); - | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function 'void show_dot_plot(char*, char*, char*, char*, int, int, int, void*)': xfmatpt.cxx:124:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); @@ -994,22 +1030,6 @@ xfmatpt.cxx:125:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ -align.cxx: In function 'int command_line_align(int, char**)': -align.cxx:1507:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] - 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); - | ^~ -align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] - 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); - | ^~~~~~~~~~~~~~~~~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'int command_line_align(int, char**)' at align.cxx:1507:12: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function 'void draw_header(Fl_Widget*, SEA_VIEW*)': seaview.cxx:1124:23: warning: '%7d' directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); @@ -1054,6 +1074,22 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +align.cxx: In function 'int command_line_align(int, char**)': +align.cxx:1507:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] + 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); + | ^~ +align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] + 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); + | ^~~~~~~~~~~~~~~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'int command_line_align(int, char**)' at align.cxx:1507:12: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ trees.cxx: In function 'char* run_parsimony_method(SEA_VIEW*, int, const char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, char**, void (*)(const char*, ...))': trees.cxx:2073:57: warning: ' best trees, ' directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=] 2073 | if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best); @@ -1067,6 +1103,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': +trees.cxx:1181:56: warning: '%s' directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] + 1181 | sprintf(args + strlen(args), " -u \"%s\"", tmp); + | ^~ ~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void run_phyml_callback(Fl_Widget*, void*)' at trees.cxx:1181:13: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 4102 bytes into a destination of size 1000 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ treedraw.cxx: In function 'int count_node(noeud*, noeud*)': treedraw.cxx:3303:15: warning: argument 2 null where non-null expected [-Wnonnull] 3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { @@ -1089,19 +1138,6 @@ /usr/include/string.h:156:12: note: in a call to function 'int strcmp(const char*, const char*)' declared 'nonnull' 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ -trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': -trees.cxx:1181:56: warning: '%s' directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] - 1181 | sprintf(args + strlen(args), " -u \"%s\"", tmp); - | ^~ ~~~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void run_phyml_callback(Fl_Widget*, void*)' at trees.cxx:1181:13: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 4102 bytes into a destination of size 1000 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ g++ -o seaview -Wl,-z,relro -Wl,-z,now seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz -Wl,-z,muldefs make[1]: Leaving directory '/build/reproducible-path/seaview-5.0.5' dh_auto_test @@ -1129,8 +1165,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'seaview-dbgsym' in '../seaview-dbgsym_5.0.5-3_amd64.deb'. dpkg-deb: building package 'seaview' in '../seaview_5.0.5-3_amd64.deb'. +dpkg-deb: building package 'seaview-dbgsym' in '../seaview-dbgsym_5.0.5-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../seaview_5.0.5-3_amd64.buildinfo dpkg-genchanges --build=binary -O../seaview_5.0.5-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1138,12 +1174,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2311990/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1700568 and its subdirectories -I: Current time: Sat May 16 14:43:23 -12 2026 -I: pbuilder-time-stamp: 1778985803 +I: removing directory /srv/workspace/pbuilder/2311990 and its subdirectories +I: Current time: Mon Apr 14 10:21:43 +14 2025 +I: pbuilder-time-stamp: 1744575703