Diff of the two buildlogs: -- --- b1/build.log 2025-02-18 00:00:02.884423026 +0000 +++ b2/build.log 2025-02-18 00:06:42.542465854 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 22 18:13:50 -12 2026 -I: pbuilder-time-stamp: 1774246430 +I: Current time: Tue Feb 18 14:00:05 +14 2025 +I: pbuilder-time-stamp: 1739836805 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,51 +27,83 @@ dpkg-source: info: applying test_scope_for_junit.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2371790/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 18 00:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d497697eae414dbf8d44ecfb4d7041b5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2371790' - PS1='# ' - PS2='> ' + INVOCATION_ID=e4541b6d1fd64fedae26c08576371702 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2573606 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ogQ3rzOT/pbuilderrc_wK2Q --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ogQ3rzOT/b1 --logfile b1/build.log snpsift_5.2.e+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ogQ3rzOT/pbuilderrc_Zuav --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ogQ3rzOT/b2 --logfile b2/build.log snpsift_5.2.e+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2371790/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -460,7 +492,7 @@ Get: 321 http://deb.debian.org/debian unstable/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 maven-debian-helper all 2.6.7 [108 kB] -Fetched 314 MB in 7s (47.2 MB/s) +Fetched 314 MB in 10s (30.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) @@ -1510,8 +1542,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Mar 23 06:18:18 UTC 2026. -Universal Time is now: Mon Mar 23 06:18:18 UTC 2026. +Local time is now: Tue Feb 18 00:02:43 UTC 2025. +Universal Time is now: Tue Feb 18 00:02:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1977,7 +2009,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/snpsift-5.2.e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snpsift_5.2.e+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/snpsift-5.2.e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snpsift_5.2.e+dfsg-2_source.changes dpkg-buildpackage: info: source package snpsift dpkg-buildpackage: info: source version 5.2.e+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1990,7 +2026,7 @@ bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibsnpsift-java jh_clean -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/snpsift-5.2.e+dfsg' # Removing all the sidx files created during the tests. Then one of them must @@ -2402,8 +2438,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 14.321 s -[INFO] Finished at: 2026-03-22T18:19:11-12:00 +[INFO] Total time: 8.560 s +[INFO] Finished at: 2025-02-18T14:03:20+14:00 [INFO] ------------------------------------------------------------------------ debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/snpsift-5.2.e+dfsg' @@ -2442,21 +2478,104 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running org.snpsift.tests.unit.TestCasesDbNsfp -TestCasesDbNsfp.test_01(113): Test -TestCasesDbNsfp.test_02(138): Test -TestCasesDbNsfp.test_03(160): Test -TestCasesDbNsfp.test_04(179): Test -TestCasesDbNsfp.test_05(200): Test -TestCasesDbNsfp.test_06(223): Test -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.244 s - in org.snpsift.tests.unit.TestCasesDbNsfp -[INFO] Running org.snpsift.tests.unit.TestCasesFilterChrPos -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.snpsift.tests.unit.TestCasesFilterChrPos -[INFO] Running org.snpsift.tests.unit.TestCasesVariantTypeCounter -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.snpsift.tests.unit.TestCasesVariantTypeCounter +[INFO] Running org.snpsift.tests.unit.TestCasesPosIndex +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in org.snpsift.tests.unit.TestCasesPosIndex +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnInt +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.644 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnInt +[INFO] Running org.snpsift.tests.unit.TestCasesCaseControl +TestCasesCaseControl.test_01(53): Test +TestCasesCaseControl.test_02(65): Test +TestCasesCaseControl.test_03(83): Test +TestCasesCaseControl.test_04(107): Test +TestCasesCaseControl.test_05(119): Test +TestCasesCaseControl.test_06(125): Test +TestCasesCaseControl.test_07(131): Test +TestCasesCaseControl.test_08(137): Test +TestCasesCaseControl.test_09(146): Test +TestCasesCaseControl.test_10(222): Test +TestCasesCaseControl.test_02_Str2(77): Test +TestCasesCaseControl.test_03_Str2(95): Test +TestCasesCaseControl.test_03_Str3(101): Test +TestCasesCaseControl.test_01_Str(59): Test +TestCasesCaseControl.test_02_Str(71): Test +TestCasesCaseControl.test_03_Str(89): Test +TestCasesCaseControl.test_04_Str(113): Test +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.279 s - in org.snpsift.tests.unit.TestCasesCaseControl +[INFO] Running org.snpsift.tests.unit.TestCasesFilterALL +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.081 s - in org.snpsift.tests.unit.TestCasesFilterALL [INFO] Running org.snpsift.tests.unit.TestCasesGeneSets TestCasesGeneSets.test_01(25): Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in org.snpsift.tests.unit.TestCasesGeneSets +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 s - in org.snpsift.tests.unit.TestCasesGeneSets +[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateMem +TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test +TestCasesAnnotate.test_29_repeated_IDs(618): Test +TestCasesAnnotate.test_01(145): Test +TestCasesAnnotate.test_02(153): Test +TestCasesAnnotate.test_03(161): Test +TestCasesAnnotate.test_04(169): Test +TestCasesAnnotate.test_05(181): Test +TestCasesAnnotate.test_06(192): Test +TestCasesAnnotate.test_07(217): Test +TestCasesAnnotate.test_08(232): Test +TestCasesAnnotate.test_09(245): Test +TestCasesAnnotate.test_11(273): Test +TestCasesAnnotate.test_12(300): Test +TestCasesAnnotate.test_13(320): Test +TestCasesAnnotate.test_14(340): Test +TestCasesAnnotate.test_15(356): Test +TestCasesAnnotate.test_16(372): Test +TestCasesAnnotate.test_17(390): Test +TestCasesAnnotate.test_18(415): Test +TestCasesAnnotate.test_19(428): Test +TestCasesAnnotate.test_20(439): Test +TestCasesAnnotate.test_21(453): Test +TestCasesAnnotate.test_22(479): Test +TestCasesAnnotate.test_24(509): Test +TestCasesAnnotate.test_25(539): Test +TestCasesAnnotate.test_35(693): Test +TestCasesAnnotate.test_36(711): Test +TestCasesAnnotate.test_38(732): Test +TestCasesAnnotate.test_39(743): Test +TestCasesAnnotate.test_40(762): Test +TestCasesAnnotate.test_41(770): Test +TestCasesAnnotate.test_42(781): Test +TestCasesAnnotate.test_43(809): Test +TestCasesAnnotate.test_44(835): Test +TestCasesAnnotate.test_45(861): Test +TestCasesAnnotate.test_33_empty_db(665): Test +TestCasesAnnotate.test_26_repeat_db_entry(568): Test +TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test +TestCasesAnnotate.test_28_exists(596): Test +TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test +TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test +TestCasesAnnotate.test_27_repeat_db_entry(580): Test +[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.5 s - in org.snpsift.tests.unit.TestCasesAnnotateMem +[INFO] Running org.snpsift.tests.unit.TestCasesFilterChrPos +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesFilterChrPos +[INFO] Running org.snpsift.tests.unit.TestCasesGt +TestCasesGt.test_01(25): Test +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 s - in org.snpsift.tests.unit.TestCasesGt +[INFO] Running org.snpsift.tests.unit.TestCasesSplit +TestCasesSplit.test_01(28): Test +TestCasesSplit.test_02(58): Test +TestCasesSplit.test_03(84): Test +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 s - in org.snpsift.tests.unit.TestCasesSplit +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnBool +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.537 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnBool +[INFO] Running org.snpsift.tests.unit.TestCasesConcordance +TestCasesConcordance.test_01(68): Test +TestCasesConcordance.test_02(74): Test +TestCasesConcordance.test_03(80): Test +TestCasesConcordance.test_04(91): Test +TestCasesConcordance.test_05(102): Test +TestCasesConcordance.test_06(113): Test +TestCasesConcordance.test_07(125): Test +TestCasesConcordance.test_08(131): Test +TestCasesConcordance.test_09(142): Test +TestCasesConcordance.test_10(153): Test +TestCasesConcordance.test_11(164): Test +TestCasesConcordance.test_12(181): Test +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 s - in org.snpsift.tests.unit.TestCasesConcordance [INFO] Running org.snpsift.tests.unit.TestCasesFilter TestCasesFilter.test_57_short_circuit_AND_OR_operators(1724): Test TestCasesFilter.test_32_ann(988): Test @@ -2526,440 +2645,7 @@ TestCasesFilter.test_27_ann2(812): Test TestCasesFilter.test_26_ann(721): Test TestCasesFilter.test_27_ann(778): Test -[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.173 s - in org.snpsift.tests.unit.TestCasesFilter -[INFO] Running org.snpsift.tests.unit.TestCasesVarType -TestCasesVarType.test_05_multiple(82): Test -TestCasesVarType.test_01_SNP(58): Test -TestCasesVarType.test_02_MNP(64): Test -TestCasesVarType.test_03_INS(70): Test -TestCasesVarType.test_04_DEL(76): Test -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.snpsift.tests.unit.TestCasesVarType -[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateCreateIndex -TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test -TestCasesAnnotate.test_29_repeated_IDs(618): Test -TestCasesAnnotate.test_01(145): Test -TestCasesAnnotate.test_02(153): Test -TestCasesAnnotate.test_03(161): Test -TestCasesAnnotate.test_04(169): Test -TestCasesAnnotate.test_05(181): Test -TestCasesAnnotate.test_06(192): Test -TestCasesAnnotate.test_07(217): Test -TestCasesAnnotate.test_08(232): Test -TestCasesAnnotate.test_09(245): Test -TestCasesAnnotate.test_11(273): Test -TestCasesAnnotate.test_12(300): Test -TestCasesAnnotate.test_13(320): Test -TestCasesAnnotate.test_14(340): Test -TestCasesAnnotate.test_15(356): Test -TestCasesAnnotate.test_16(372): Test -TestCasesAnnotate.test_17(390): Test -TestCasesAnnotate.test_18(415): Test -TestCasesAnnotate.test_19(428): Test -TestCasesAnnotate.test_20(439): Test -TestCasesAnnotate.test_21(453): Test -TestCasesAnnotate.test_22(479): Test -TestCasesAnnotate.test_24(509): Test -TestCasesAnnotate.test_25(539): Test -TestCasesAnnotate.test_35(693): Test -TestCasesAnnotate.test_36(711): Test -TestCasesAnnotate.test_38(732): Test -TestCasesAnnotate.test_39(743): Test -TestCasesAnnotate.test_40(762): Test -TestCasesAnnotate.test_41(770): Test -TestCasesAnnotate.test_42(781): Test -TestCasesAnnotate.test_43(809): Test -TestCasesAnnotate.test_44(835): Test -TestCasesAnnotate.test_45(861): Test -TestCasesAnnotate.test_33_empty_db(665): Test -TestCasesAnnotate.test_26_repeat_db_entry(568): Test -TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test -TestCasesAnnotate.test_28_exists(596): Test -TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test -TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test -TestCasesAnnotate.test_27_repeat_db_entry(580): Test -[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.022 s - in org.snpsift.tests.unit.TestCasesAnnotateCreateIndex -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnChar -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.66 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnChar -[INFO] Running org.snpsift.tests.unit.TestCasesIndex -TestCasesIndex.test_01(32): Test -TestCasesIndex.test_02(84): Test -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.754 s - in org.snpsift.tests.unit.TestCasesIndex -[INFO] Running org.snpsift.tests.unit.TestCasesStringArray -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.873 s - in org.snpsift.tests.unit.TestCasesStringArray -[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateUseIndex -TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test -TestCasesAnnotate.test_29_repeated_IDs(618): Test -TestCasesAnnotate.test_01(145): Test -TestCasesAnnotate.test_02(153): Test -TestCasesAnnotate.test_03(161): Test -TestCasesAnnotate.test_04(169): Test -TestCasesAnnotate.test_05(181): Test -TestCasesAnnotate.test_06(192): Test -TestCasesAnnotate.test_07(217): Test -TestCasesAnnotate.test_08(232): Test -TestCasesAnnotate.test_09(245): Test -TestCasesAnnotate.test_11(273): Test -TestCasesAnnotate.test_12(300): Test -TestCasesAnnotate.test_13(320): Test -TestCasesAnnotate.test_14(340): Test -TestCasesAnnotate.test_15(356): Test -TestCasesAnnotate.test_16(372): Test -TestCasesAnnotate.test_17(390): Test -TestCasesAnnotate.test_18(415): Test -TestCasesAnnotate.test_19(428): Test -TestCasesAnnotate.test_20(439): Test -TestCasesAnnotate.test_21(453): Test -TestCasesAnnotate.test_22(479): Test -TestCasesAnnotate.test_24(509): Test -TestCasesAnnotate.test_25(539): Test -TestCasesAnnotate.test_35(693): Test -TestCasesAnnotate.test_36(711): Test -TestCasesAnnotate.test_38(732): Test -TestCasesAnnotate.test_39(743): Test -TestCasesAnnotate.test_40(762): Test -TestCasesAnnotate.test_41(770): Test -TestCasesAnnotate.test_42(781): Test -TestCasesAnnotate.test_43(809): Test -TestCasesAnnotate.test_44(835): Test -TestCasesAnnotate.test_45(861): Test -TestCasesAnnotate.test_33_empty_db(665): Test -TestCasesAnnotate.test_26_repeat_db_entry(568): Test -TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test -TestCasesAnnotate.test_28_exists(596): Test -TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test -TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test -TestCasesAnnotate.test_27_repeat_db_entry(580): Test -[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.577 s - in org.snpsift.tests.unit.TestCasesAnnotateUseIndex -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMnp -DataFrame: MNP, size: 100, current index: 100, memory: 63.4 KB - Field types: - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - 0 130 | GACTC | ATGCT | G | null | -346484495 | false | QZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPL | null | 0.43979982659080874 | VGLPKFFVDPCDVBXJS | - 1 800 | CCA | GAT | S | null | 734084664 | false | YGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQTLZADZBNDXVF | null | 0.6279332754134727 | XNTLWTQRTLGZHNXJGLETAEGILYUTDVAIF | - 2 1259 | TC | GT | S | null | null | false | SRXCKKTJLEUVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTD | null | 0.8556303199441717 | IFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBF | - 3 1947 | AGAAA | GCGTC | F | null | -135854320 | true | HAYYLXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBKSLLDJGZKGHDVQLAAKWGAU | null | null | | - 4 2673 | TC | CG | F | null | -288299077 | true | null | null | 0.7278040889330866 | TPRSHRUNJEPJIC | - 5 3562 | AGGTTA | GATAGC | U | null | 162252886 | true | BUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJ | null | 0.028750514440683772 | AMKDDPVNZURFTUUMHFZGRNHENWGVSRDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHAR | - 6 4158 | CCTCCC | GAGAAT | B | null | -304213835 | false | MFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTU | null | 0.04102447110373153 | SHHXQXSIOOTQBYAMZRFKJCJOARSXBEQNWBEYBTRLLBJTOPXYAVBUFKFXCYZJXGYVIC | - 7 4279 | CC | GG | X | null | 256660382 | false | MONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEO | null | 0.19109407573087445 | ASEUGGPSBVAVQAISGEPOGDMTZP | - 8 4676 | TTCTA | GATCC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | - 9 5500 | AG | TC | O | null | -1679979548 | false | QKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSWCUNQIYBBUBAZLCDFWYENCGBPHX | null | 0.8750558587334625 | CDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJW | - 10 5518 | CAGCA | ACAAT | G | null | -886012130 | false | VHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNAEJFNLP | null | 0.9484603601700132 | MYKFYMDAGCGBDIDZEEHKQQHTZFSFVYKAZIZWLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZT | - 11 5728 | ACGC | GTCA | Y | null | -1245654784 | false | IAAHSWFGVIBKKGFWKBYZYNSNTPANSIGHYIAITLYHHFQBGATATIA | null | 0.7194449346355324 | IKEXJRDMJIBLOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZ | - 12 6459 | CCG | AGA | null | null | -129760917 | false | BYNFJGRC | null | 0.5882172034343477 | GIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYW | - 13 6889 | AGCGC | CCAAG | P | null | 1620772052 | true | null | null | 0.35351188686690904 | FUCMTYDAXAWLEPFSOPHVFZUEFDEJ | - 14 7834 | AA | CT | null | null | 335155552 | false | null | null | 0.4086730063619384 | null | - 15 8137 | CTAG | TCCT | D | null | 690281034 | true | HBLPLKJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQC | null | 0.4844370393511812 | UBSELUPRB | - 16 9084 | TT | AA | C | null | 917754666 | false | XDMDFINZHSRJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRABIWE | null | 0.6487816358956248 | SWJIIPEMJKSOVNOHLLTOINNESNDAMN | - 17 9409 | GCCT | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | - 18 10001 | TGCACA | ATAGTG | T | null | -1515629276 | null | null | null | null | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | - 19 10311 | GTGT | ACTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | - 20 11068 | GT | CG | N | null | 509578579 | null | UKFPBAFIBSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJS | null | 0.7785962769003004 | TPEZATDQXXMYLARYBPGPAPLS | - 21 11174 | TGCTCT | AAACTA | P | null | 921144451 | false | WOVCTBZXSFZEKHHLXZIXJKJIXDPIKBKIANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUU | null | 0.9123421937562539 | R | - 22 11571 | CTAG | TCCT | D | null | 1718949627 | false | MYOHSRXWUDPVRSRMKLUCGTCFRDYIDIJFX | null | 0.46673104389165376 | TYPTCCKIUXDNSLHWUDRUSZUWXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGV | - 23 12078 | CCCT | TTTC | O | null | -1384192067 | false | NJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCSMNEYJGTFPZIVULMYLCDHDSTUTUSRRDMJNIGBCJUBZXLDNNXPCVBJPSNJTEH | null | 0.26815358468775163 | XTCDDIXWJJSJYHEWHKXIGPLGGEVWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEO | - 24 12254 | TCAC | GGTT | null | null | -438374424 | true | null | null | 0.14673592424180915 | AHUDG | - 25 12349 | ATCAT | CGGTA | H | null | 758453846 | true | KLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPB | null | 0.2292387309942473 | YYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELV | - 26 13123 | CCC | GAT | X | null | -1001450513 | true | JSK | null | 0.2696122012937159 | BHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMVQSQTSRSIRDVTNMTRXPB | - 27 13770 | TGAT | GATG | null | null | 2005789910 | true | PWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQWJECWFMMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCV | null | null | XP | - 28 14344 | ACG | TAT | P | null | 1199993081 | true | FQNJQUXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHA | null | 0.5103393097757357 | GVHHLJEBZYNSDERCMAIXBNIQRIEMD | - 29 14756 | TGAC | CTTT | N | null | -1804611253 | false | LGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJUVINT | null | 0.7827166701418667 | CUDRTBUEEBJFHEBUIHMNHWIMEDVXAMQMWWROUPEHPKRI | - 30 15508 | GAAT | CGTG | H | null | 1220755583 | false | MBQAJLGCZOUMEVVTADJIMOLIX | null | 0.5501110077087921 | TOBMXBPTXHXONSYUZUFENSQQWZBPWGGGPCOYIRUODLHH | - 31 16240 | AGGAA | CACGG | U | null | 559197251 | true | HBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJ | null | 0.4097318407654317 | RFLVSUERWOAEHZWLSQJA | - 32 16358 | GGTA | CAGT | null | null | null | true | QBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOPVYHTILJJSHAQMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZ | null | 0.9780981106199931 | NXLQTNZOAMMXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUV | - 33 16976 | AAACAC | TCCGCT | M | null | -319681430 | false | DSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXBOMEYSHEELIYNVOKDHIXALLPUSAKUWJOTDSNJKSFBXNRJBTUVDIAXJ | null | 0.3831246943809442 | BFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHW | - 34 17435 | AACCCT | GGTTAA | R | null | -2051070316 | true | LDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJ | null | 0.8501062151834663 | XGCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXR | - 35 18205 | AATAT | CCACA | R | null | -1016853906 | false | RQQLRESQTQPMYWUYTHQCHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQM | null | 0.1252305846603955 | YAZDFJJHTKRYJFYFQLAKZUSSPYAPSWB | - 36 18671 | CTAA | ACCT | A | null | 312433305 | true | QXSZYHTFPESQNYFKQEPAPSQQOQTKLVFPHTXHKJQVYAMKHLOWPTSYXUYRRGGG | null | 0.7732929039471246 | | - 37 18815 | AGGT | TCCC | H | null | -192126094 | true | FDEFEAIUVTSP | null | 0.6687744242493339 | CZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQ | - 38 18990 | CCTCC | TTGAG | L | null | 1338557204 | false | KEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLRHFHNQMBPQZMVYTJOPTTGRQOOBAXHWOPEORODIVFVMHWOXPGIWSRG | null | null | ZTXKZAMMIUSGJPTSJDTKELPQHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOTNOWPKPFZRWZGJGDREVYFY | - 39 19649 | CCTTAT | TTAGGG | R | null | -845218447 | true | AVLQKIFL | null | 0.7741583228840283 | CGXHLBHRLBCINDKYLGDKTYCLAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERA | - 40 20607 | GCCAT | TGTCA | K | null | -45025817 | true | YHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCLAUMVGKGUNPFZAZQHYKIPFDMLTTAXEEGFQGXLBBH | null | 0.9691373737772555 | XUKJDPVJPSOBEOLCFOWQUAECVTRUGBQXLOOIN | - 41 21156 | GCCGCA | CGTATG | W | null | -1243561189 | true | SMRUPT | null | 0.4429926847541722 | SYPRLU | - 42 21806 | TA | AC | null | null | 1735497575 | false | null | null | 0.0394328659741473 | null | - 43 21839 | AG | TA | B | null | -865651518 | true | QFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXUL | null | 0.5871949292573951 | EPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTH | - 44 22489 | CGATCT | TCGGTC | P | null | 330394861 | false | FFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSF | null | 0.2997445310722515 | | - 45 23072 | GTTGGG | CCAAAA | Y | null | -502033321 | true | NUZCBT | null | 0.43276042129899417 | LQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNP | - 46 23295 | GGCCG | AAGAC | Z | null | -1518612753 | null | null | null | 0.6671145728647582 | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | - 47 23898 | TCAA | AGGG | O | null | 448265666 | false | GIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCK | null | 0.24165067951893648 | JURGROVHDGOLLVMWBULFCGKDFFUUTDDXURSPKSCNVRUE | - 48 24196 | AAGA | CCCT | G | null | 1626222045 | true | UDXOHXBODYUAKYGAHTLQELXYTJ | null | 0.32903298056413266 | IWXCNWIISITBTVMNPAYTHIPNCKCARBO | - 49 25181 | GTGG | CGTT | E | null | -1426293938 | true | IUOIHRTVRUYFUACKZH | null | null | GQTKNBBOPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHKAV | - 50 25974 | GA | TG | S | null | 1729122195 | null | AUPORVJZTOJMMUPECSVBKGRQSNGDQGTNSIEYGJHVFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYP | null | 0.20879455011120462 | RSBDIILLCGQGDPFJVTKNEZBOQHXUGGG | - 51 26128 | GGAC | CTGA | S | null | -2107939295 | true | GDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDD | null | 0.3465217480145627 | GISAKLNHGVIVMCRZGOEXFHZBLHXADISRKTIKXY | - 52 26948 | GTTC | CGCT | I | null | 874276164 | false | null | null | 0.8700358952315721 | LUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCI | - 53 27123 | GAGTTG | TTCGGA | C | null | -1626430403 | false | OOWLPEKVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPE | null | 0.4907299787684579 | ZPZQRZIACBFBDNF | - 54 27200 | TCCC | AGTG | null | null | 1628916152 | true | DAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPHVJBHDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRL | null | 0.20887152037949375 | IBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFERFVNVUBW | - 55 27870 | AT | CG | P | null | 918507005 | false | NSPEVNUIRNSROCBCLTAXWNYPFVQNKFDAHZSZPMHFL | null | 0.7860384613677455 | THEUQCNVKQSNISLICNKDKOMR | - 56 28608 | GTT | AGG | null | null | 1578678272 | true | PVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPBZSBYHGC | null | 0.6304197165537765 | MZPSCZTRZLGJQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAVQQYZ | - 57 29523 | GGTG | TTCT | F | null | null | false | GCXSKCEDPKOLOTGKOBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCD | null | 0.8901803045759502 | PETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZKKCJCLUBGMVFISLNJICNTQ | - 58 29759 | CTAC | TGCG | F | null | 1755390814 | true | EUPCXSMJBZ | null | 0.10399455024155924 | OECXQBGSKUSCEPQAOEVABQVGYCHU | - 59 30240 | GAGC | CGTA | J | null | 245805235 | false | WQCTHQNXHDVMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNI | null | 0.4726267810717161 | XQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOF | - 60 30670 | GTACTT | TAGGGA | S | null | 944514871 | true | CXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXH | null | 0.9717077606324023 | LDLEYBCIQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJB | - 61 30689 | GCGG | TATA | M | null | -2073219890 | true | CUBYQEBQREDVKQVRWCEFSWRGIDIFQAFZGNEUXCUGFHDUYGCNDAMPRDVDPCCTNNB | null | 0.9472471024440868 | null | - 62 30947 | GTC | AAA | I | null | -667972054 | true | JEAODATZBRRLBEQPWOKOXK | null | null | F | - 63 31496 | TACC | ACTT | null | null | -1153848742 | false | WXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKE | null | 0.3776459242637572 | BOQDFQOSGIMGDVIDDYSIARMFNRXIDQWTWJFLQPICWLAKPWYRVDDYVZKYHEGNPULBRVHWTPPXLDCEUJVNDMTNWIV | - 64 31944 | TCTA | GGCG | B | null | 486774086 | false | PXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZ | null | 0.3695467993106807 | QDSIHADOFZLPCQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUT | - 65 32434 | GGAAGG | ACCTCT | H | null | 1595589726 | false | IMHNAJEWWRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCK | null | 0.1196230872144961 | UODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLL | - 66 33205 | CG | GT | Q | null | -54864998 | false | MCMBEVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANB | null | null | HKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGB | - 67 33771 | TGCCGC | ACTGAA | J | null | -899793151 | false | XHGUEQLVFIECDHCJEXBPZTNNUGGNQRCFGCLCZLYWEJMYHNTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKL | null | 0.1905641263105804 | ZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCB | - 68 34741 | TGATT | CAGAG | F | null | -1225579561 | true | CCUOEWSCGDK | null | 0.881650195389698 | YDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVT | - 69 35499 | CT | AG | K | null | -276395645 | false | null | null | 0.977751537018833 | ZPEPQWRMMWVETGLEKPBV | - 70 35546 | AT | CG | null | null | 2040100435 | true | ZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPN | null | 0.09037104358084358 | BSUHN | - 71 36433 | GGCT | ATGC | C | null | 168413364 | true | null | null | 0.1904413360563667 | JHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFH | - 72 37416 | CG | TC | M | null | 1814030146 | true | DIISR | null | 0.27648269722880425 | JWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHH | - 73 38285 | AGC | TTA | D | null | -804208911 | null | OKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEP | null | 0.9198539785480527 | null | - 74 38361 | GCTGAC | AAACCT | G | null | null | false | SVPYLUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZ | null | 0.9186628435199452 | FHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCH | - 75 38632 | CCTAGC | TAGGTT | J | null | -1928769563 | false | ZC | null | 0.12015177706912317 | PRCYFYRJ | - 76 39006 | TCG | ATC | S | null | -1435537229 | true | VSZPXVTNOEXWQQVTGTYHRY | null | 0.10825272757712423 | AEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTIDOMJAM | - 77 39326 | CTGG | GCCC | N | null | 1238244676 | false | RPGGYYEALD | null | 0.41559312842378404 | YXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZ | - 78 39616 | AT | GC | P | null | 193791099 | false | YTCT | null | 0.2178404304349859 | PFDYCFBWFIJOYSGWEIOFGIU | - 79 40139 | TGTAGT | CAGGTA | F | null | 928401180 | true | null | null | 0.4941678716122485 | GHUMR | - 80 40682 | AC | GA | null | null | -510409048 | false | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | 0.6826290896912366 | GZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | - 81 40844 | GTTTC | CGCCG | M | null | 838024760 | true | UVO | null | 0.5626054761915171 | FDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVXJVCQCBJL | - 82 41772 | TT | CG | null | null | -1963423867 | false | ZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCM | null | 0.06821448380998862 | null | - 83 42405 | GGAGAT | CCGAGA | null | null | 599980869 | true | SVREX | null | 0.557000574778266 | BCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAV | - 84 42798 | AAAT | CCTC | W | null | -433896788 | true | NNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURG | null | 0.8086382761333594 | null | - 85 43166 | TCCTT | GTGCG | P | null | -212160676 | false | DASKPMDBASJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQ | null | 0.4004611468446073 | OL | - 86 43893 | TCAA | ATCG | A | null | -1842380129 | true | ALSCGAZOEWAOGVKFINKY | null | 0.6941442078114862 | null | - 87 44799 | CTATG | AATGA | C | null | 1518735330 | false | TEGAXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMU | null | 0.035089348611912374 | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | - 88 44980 | ACACG | GGGGT | A | null | -1094185683 | true | DFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYCFSVUZWZMVVVAMVZAAQHDHBHFF | null | 0.39624910302016625 | SOPTTCSZJSNBGPIFIBAHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIA | - 89 45514 | CTAGGG | GCTATT | C | null | 829369797 | true | FYBZVVKGXESMQRCAXYFQXIDFWSGDLLYEDQGNLLGTKZUZKDQYKPUXKE | null | 0.06802209908917545 | CIIEIJGPIYRYOKKJGWQFGMJFLHZAH | - 90 46164 | CTT | TGC | M | null | -814452473 | false | YGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELONOYSMVTAGLUXLTSFSUXWPAZ | null | 0.7938675906527775 | | - 91 46724 | TTATGC | GGTAAA | P | null | 1882730814 | true | PTPSDIRXOPHWHAEEWOYVMXSLFZPIOTQNACNSNCHTLNYRRGIOERSJAEXC | null | 0.37844740748624583 | XIXGKFSRYQHMBXLWGDWVB | - 92 46735 | GACGC | TCTTG | G | null | 575014296 | false | OMCUHBNTWZFLRLFXDZVCSKRHFAO | null | 0.5133194346909566 | XNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJU | - 93 47404 | GACG | TTGA | V | null | 681339300 | true | ITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYRE | null | null | PBMUTRLSEYOQUBOR | - 94 48271 | GAGCG | TTTAT | Z | null | 300539013 | true | null | null | 0.936695453283102 | YURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | - 95 48812 | CT | GG | B | null | -538906411 | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | - 96 49292 | TGGT | CACG | P | null | 2113525344 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | null | null | - 97 49663 | TTCTA | GGTAG | H | null | -1954124469 | false | GKFGNIUNTJWMMJQHSKQ | null | null | YNLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZA | - 98 49944 | TAAC | CGCA | G | null | -1858433447 | true | RVKVELGN | null | 0.8010342281968461 | IVYJCJCARHWGLTWGVOVBBSKLOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIB | - 99 50194 | CTT | TAC | Y | null | -944159107 | true | QYFRYGYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEHBWLJAJASVDEOFQVPOEGNJ | null | 0.06701482985829554 | YWMZAJHDQZT | - -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.snpsift.tests.unit.TestCasesDataFrameMnp -[INFO] Running org.snpsift.tests.unit.TestCasesCaseControl -TestCasesCaseControl.test_01(53): Test -TestCasesCaseControl.test_02(65): Test -TestCasesCaseControl.test_03(83): Test -TestCasesCaseControl.test_04(107): Test -TestCasesCaseControl.test_05(119): Test -TestCasesCaseControl.test_06(125): Test -TestCasesCaseControl.test_07(131): Test -TestCasesCaseControl.test_08(137): Test -TestCasesCaseControl.test_09(146): Test -TestCasesCaseControl.test_10(222): Test -TestCasesCaseControl.test_02_Str2(77): Test -TestCasesCaseControl.test_03_Str2(95): Test -TestCasesCaseControl.test_03_Str3(101): Test -TestCasesCaseControl.test_01_Str(59): Test -TestCasesCaseControl.test_02_Str(71): Test -TestCasesCaseControl.test_03_Str(89): Test -TestCasesCaseControl.test_04_Str(113): Test -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.263 s - in org.snpsift.tests.unit.TestCasesCaseControl -[INFO] Running org.snpsift.tests.unit.TestCasesIntervals -TestCasesIntervals.test_01(25): Test -TestCasesIntervals.test_02(50): Test -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.snpsift.tests.unit.TestCasesIntervals -[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateTabix -TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test -TestCasesAnnotate.test_29_repeated_IDs(618): Test -TestCasesAnnotate.test_01(145): Test -TestCasesAnnotate.test_02(153): Test -TestCasesAnnotate.test_03(161): Test -TestCasesAnnotate.test_04(169): Test -TestCasesAnnotate.test_05(181): Test -TestCasesAnnotate.test_06(192): Test -TestCasesAnnotate.test_07(217): Test -TestCasesAnnotate.test_08(232): Test -TestCasesAnnotate.test_09(245): Test -TestCasesAnnotate.test_11(273): Test -TestCasesAnnotate.test_12(300): Test -TestCasesAnnotate.test_13(320): Test -TestCasesAnnotate.test_14(340): Test -TestCasesAnnotate.test_15(356): Test -TestCasesAnnotate.test_16(372): Test -TestCasesAnnotate.test_17(390): Test -TestCasesAnnotate.test_18(415): Test -TestCasesAnnotate.test_19(428): Test -TestCasesAnnotate.test_20(439): Test -TestCasesAnnotate.test_21(453): Test -TestCasesAnnotate.test_22(479): Test -TestCasesAnnotate.test_24(509): Test -TestCasesAnnotate.test_25(539): Test -TestCasesAnnotate.test_35(693): Test -TestCasesAnnotate.test_36(711): Test -TestCasesAnnotate.test_38(732): Test -TestCasesAnnotate.test_39(743): Test -TestCasesAnnotate.test_40(762): Test -TestCasesAnnotate.test_41(770): Test -TestCasesAnnotate.test_42(781): Test -TestCasesAnnotate.test_43(809): Test -TestCasesAnnotate.test_44(835): Test -TestCasesAnnotate.test_45(861): Test -TestCasesAnnotate.test_33_empty_db(665): Test -TestCasesAnnotate.test_26_repeat_db_entry(568): Test -TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test -TestCasesAnnotate.test_28_exists(596): Test -TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test -TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test -TestCasesAnnotate.test_27_repeat_db_entry(580): Test -[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.772 s - in org.snpsift.tests.unit.TestCasesAnnotateTabix -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMixed -DataFrame: MIXED, size: 100, current index: 100, memory: 63.4 KB - Field types: - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - 0 130 | GACTC | ATGCTTTTACC | H | null | 1660292060 | true | VGUIHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGLETAEGILYUTDVAIFEOZYGHKA | null | 0.1505474834792303 | FVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPLWOJYB | - 1 719 | AA | TTTCATAC | D | null | null | false | null | null | 0.2821982861306481 | null | - 2 1667 | GGCGTG | ACG | N | null | null | true | KT | null | 0.6610508916166571 | MFMQTLZADZBNDXVFRJHSDKMELBXLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSR | - 3 2408 | GCGG | TGA | X | null | -926287273 | false | ETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXAIMKCTVQNSDPJFZM | null | 0.6053218598587271 | CTXUKSW | - 4 2905 | CAGGA | TGTC | C | null | -2110639781 | false | BKSLLDJGZKGHDVQLAAK | null | 0.0987491349432944 | LUYOJPARNUOSX | - 5 3569 | TACATC | GGTTA | Y | null | -1619827948 | true | FDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKDDP | null | 0.6958254788801048 | HRUNJEPJ | - 6 3942 | AGG | GC | E | null | 1759468634 | true | POXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQ | null | 0.31191986699310315 | GKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKG | - 7 4309 | GCGT | TGTGGA | B | null | 1001974229 | false | AMFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQ | null | 0.9430161143370018 | OPXYAVBUFKFXCYZJXGYVI | - 8 5266 | CCA | GGCC | G | null | -1921530556 | true | GOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWY | null | 0.4442576436641098 | QAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKI | - 9 5514 | TAG | CC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | - 10 6338 | AG | CTCG | M | null | -536631031 | false | FHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUC | null | 0.6880295632898734 | SCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJWQVRQ | - 11 6556 | GACGG | TCGATA | Y | null | -1809889978 | false | null | null | null | XSRWAOUSCYHUHUBGDWQETIVGKEMLVCL | - 12 7530 | GCCTC | TTTA | F | null | 125900821 | false | KFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAE | null | 0.040427108343605966 | WLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZTPWRVHQM | - 13 7848 | GCTTTT | TGAA | V | null | 552048597 | false | null | null | 0.2229941719444838 | GIC | - 14 8230 | GC | ATC | X | null | -1901567179 | false | AITLYHHFQB | null | 0.9281005456025566 | LOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSNTPANSIG | - 15 9168 | CGGG | GTCCG | U | null | -1414511684 | true | TIMJZ | null | null | PMQNUGIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYV | - 16 9658 | ACG | TGCCC | H | null | -192898018 | true | null | null | 0.4896099581558816 | WHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOCPKFQIYOKFUCMTYDAXAWLEPFSOPHVFZUEFDEJNVDJVDIURYCMIRNPAQXDX | - 17 10210 | CTCT | GCT | I | null | -374215497 | false | QABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGF | null | 0.16071858764042235 | UUXUBSELUPRBRXWHBLPLKJKWNFXJFPCSFTBCOGQ | - 18 10777 | AGAA | CAGCT | O | null | 779853740 | false | RJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRAB | null | 0.792349918144592 | XGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFIN | - 19 11693 | ACTGCC | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | - 20 12285 | TGCACA | CA | V | null | null | true | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | null | 0.6271643404105325 | null | - 21 12310 | ACGTGT | CTTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | - 22 13067 | GT | AAAACT | null | null | -1111392265 | null | LPNFFRJWMCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOV | null | 0.6293056149475463 | TDQXXMYLARYBPGPAPLSOYBUKFPBAFIBSUFQU | - 23 13721 | CCTTC | GGC | I | null | -479647117 | true | null | null | 0.975556283988524 | IANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUUVSTM | - 24 14152 | TTCCTC | CCG | P | null | 446527421 | false | IUXDNSLHWUDRUSZUWXBVOU | null | 0.7515769772774136 | null | - 25 14934 | GAG | ACCC | L | null | null | false | PVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTM | null | 0.5907961912348977 | JNJFGBQRLQGVCFGVOADMYOHSRX | - 26 15751 | TA | CCT | J | null | 1599579110 | true | PLGGEVWJSEISSN | null | 0.4264956752414417 | HK | - 27 16453 | GGG | CC | Q | null | 167756937 | false | YPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCS | null | 0.07643741004951432 | | - 28 16633 | GG | CTCA | H | null | -1598495659 | true | MJNIGBCJUBZXLDNNXPCVBJPSNJTEHOWCPZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIOBZJSTXAOFYSGHZWIFOJXYYHZGVI | null | 0.37999657635046324 | | - 29 17489 | CTG | GACCA | D | null | -1354298566 | true | LCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYW | null | 0.9746654097927338 | PMURZGGYMIELVHMRKLLCGOGZ | - 30 17606 | TGTAG | CCACAGAAGC | V | null | 1878366945 | true | TSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQ | null | 0.3397356585960569 | XUCJTEKJBHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMV | - 31 18076 | GCT | CTCG | P | null | -1494948578 | false | KXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXN | null | 0.7635122604571503 | ZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIGIACWWMBNSJU | - 32 18957 | TGTG | GT | C | null | 1406916527 | true | FHE | null | 0.3484911209670729 | | - 33 19938 | ATCT | TGAAC | O | null | 1149795017 | null | NTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXBPTXHXONSYUZUFENSQQWZ | null | null | KRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJ | - 34 20585 | TA | GTCA | G | null | null | false | WOAEHZWLSQJATLMHBLMPH | null | 0.9344242335487438 | GCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVS | - 35 21560 | GA | TTA | H | null | -205155770 | null | null | null | null | JDWQYQEYTRZGFJYAWMGVKTNMFTZSO | - 36 21988 | AA | GGGT | F | null | -1432480630 | true | TILJJSHAQMNRS | null | 0.3133917870266195 | BMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOP | - 37 22427 | CCCACG | TTGT | E | null | 860447657 | true | LHWZQAMTRPVRWFEGXRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTC | null | 0.694454522391098 | null | - 38 22883 | CGA | TCGTGTTGCA | U | null | -1787101930 | true | YNVOKDHIXALLPU | null | 0.36980056706464903 | DGWDDGQCUCQXBOMEYSHE | - 39 23461 | TGTCC | CA | B | null | -1176210216 | false | SRAABIXFMQFNGHXLSOEAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOYV | null | 0.3517610111383015 | null | - 40 23891 | GATC | TCG | K | null | -2118220436 | true | TOZFRCDZWFXPYAZDFJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMY | null | 0.6397097529450779 | XXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOERGUMYY | - 41 24581 | CGG | TTTT | A | null | 426196393 | false | KUOAQXSZYHTFPESQNYFKQEPAP | null | 0.5332729085977445 | IVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQMAPZOPDSXSKNPUUTRASSVAQLB | - 42 24617 | AGAG | GACCT | null | null | -298680206 | false | COPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQXJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUO | null | 0.9217536754688332 | UYRRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYB | - 43 25109 | AAT | TCAGT | S | null | -1807342243 | true | PKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOV | null | 0.028187333666930825 | QHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOT | - 44 25687 | GA | CGCCCC | R | null | 1025744915 | true | LAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJDP | null | 0.761817576180882 | WOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDK | - 45 25708 | TC | GTCTC | null | null | 1837325288 | false | null | null | 0.7695808495019865 | OOINVKQYHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQ | - 46 26557 | CC | GAA | Z | null | 1120279121 | false | LTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNR | null | 0.8524057650440213 | null | - 47 27162 | GTAG | TCGTT | Z | null | 52752038 | true | BPZBSVD | null | 0.8135675453387192 | KD | - 48 27375 | CAA | ACGTT | O | null | 350350448 | false | null | null | 0.03426922763719786 | JAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNC | - 49 27499 | AAG | TGCAGT | A | null | 23904471 | false | null | null | 0.555524367802816 | NYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOEXCNXBDIORIOEWPXUPJBBEKPQSARFFXUWDNIYWXADIYLUONTQ | - 50 27892 | TT | GGAG | Z | null | 980648983 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.9356403643683727 | DXIFUGVSFLODMYZHIL | - 51 28540 | GCCG | AG | D | null | -1499042282 | false | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | null | 0.2701407767298879 | null | - 52 29421 | GGTC | AAGGGG | H | null | -1649570894 | true | DFFUUTDDXURSPKSC | null | 0.5873439005542106 | URGROVHDGOLLVMWBULF | - 53 30224 | TAT | AGGC | O | null | null | false | null | null | 0.07495722896453205 | VEDGKFHPAFTMIKDCKWPZQGZKFCTREWKRHVHNGEOUBUIDIWX | - 54 31106 | GCAA | TA | C | null | -130152109 | true | PXLEGILTKJKBPLEWXUAUUEGQTKNBBOPMKWBRCLYRX | null | 0.8287913220463654 | UDXOHXBODYUAKYGAHTLQELXYTJ | - 55 31183 | GGA | CA | Z | null | 2067688714 | true | CKZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVT | null | 0.24977730671660292 | GJOTHKAVFTWIUOIHRTVRUY | - 56 31297 | ATTG | TG | R | null | 1742753232 | false | NSIEYGJ | null | 0.7375087780942288 | MUPECSVBKGRQSNGD | - 57 31496 | AGGAAT | GT | I | null | 2017697704 | true | FHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGN | null | 0.3831208851383727 | EBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZG | - 58 32442 | GCCCG | TAAGTT | A | null | -1205957868 | false | EERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOWLPEKVRDEKAKMMIVCNFXLMUOOKIR | null | 0.8878475241886875 | ZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCIPPPILVEHYJBDBLQWQ | - 59 33428 | GG | CCTATG | null | null | 1219143705 | false | NVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPP | null | 0.7441218930581249 | HHGTIVJGFPETBDVJSQBAQBCZIHQFIGJUIQDVGBKHIBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFE | - 60 33855 | AGTTTG | GCG | D | null | -2022598863 | false | SRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTAXWNYPFV | null | null | DZLRXCLXTZSXTKYSTMBQGGRL | - 61 33915 | ACGC | TACGACCGTGT | H | null | -1128367852 | null | TMPMZPSCZTRZLGJ | null | 0.5491902435953122 | null | - 62 34483 | TAGC | CGCGAT | null | null | -1557358100 | true | CYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEI | null | 0.31295892252145074 | CGZALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJK | - 63 34709 | CCC | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | - 64 35340 | TTC | GGACA | K | null | -166905458 | true | WFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBG | null | 0.8602483882443271 | NPJBGGWENLYYCJTPADCDDQOGHMOVVSZJD | - 65 35472 | TGAGGC | GCGAA | E | null | -1631313891 | true | NDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXV | null | 0.12363944563302387 | null | - 66 35669 | ATTGA | TCCTCA | C | null | -588298380 | false | IQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJBEA | null | 0.8550234837562305 | VMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLE | - 67 35728 | GAACCT | CTTT | H | null | -747544882 | null | IDKXPHFOTFRATSTVGMMNADVITTBCUBYQE | null | 0.7490687548616841 | OMXYIBMPQHOMYJBNEODMVEEFBCTJXH | - 68 36183 | AC | CATTA | I | null | -1319632117 | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | - 69 36578 | AAAT | GGCAT | R | null | null | false | GDVIDDYSIARMFNRXIDQWTWJFLQPICW | null | 0.43186967699327505 | HYNPLTFNBOQDFQOS | - 70 36971 | ACTTG | GG | null | null | 1277958572 | false | DARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZDPHFWRRBUMUSFMSQDSIHADOFZLPCQVYZEBMKVBMFPHNELK | null | 0.4453573989044963 | TPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQD | - 71 37618 | TTAG | CAG | B | null | 1037393841 | false | BHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDB | null | 0.39609232226749236 | null | - 72 38201 | TAC | ACGTC | D | null | -2079477320 | false | ZGJVDJEEACE | null | 0.07742081110010546 | YUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLLIVKIMHNAJEWWRVWIZSG | - 73 38493 | GCCTG | CAGA | H | null | -1463798583 | null | KVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRG | null | 0.9277467500723097 | | - 74 38540 | GGA | TATT | J | null | -1689361592 | true | IUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLV | null | 0.8092660381674348 | KTOJGDTUTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSW | - 75 39183 | AG | CTTTG | R | null | -1961645317 | false | UHAVSYGXMMWZ | null | 0.7538616470122224 | LYWEJMYHNTTSXXCLCCPJRBGGEOPFR | - 76 39799 | GT | AAT | null | null | -110423199 | false | TENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCUOEWSCGDKYTEGYYTNJQB | null | 0.12046287233320274 | IYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJ | - 77 40229 | TTGTTT | CCAA | V | null | 1431130355 | false | KLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIUBJHULZAQBBRFRJGAZJ | null | 0.7558427773660447 | BVHLRZZCIVSXZRKBEOERVKNQMYPBSUHNQKRZJLAUPUQUKFCWVILOI | - 78 40732 | CTCC | AATGT | G | null | 587644912 | true | LHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEAN | null | 0.4224823862977449 | MDCUYXFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDII | - 79 41491 | CACA | ACTGCTTCG | H | null | -554956194 | false | OLXJAFLXULPZGOHHPVYKONTTVCOQ | null | 0.5208315202141268 | LOGWYTQNLEWXWB | - 80 41770 | AAAT | CTGATTAGAC | W | null | -985447616 | true | ORFBZWSPFYBDENAEMVIQZBDVRTNVQWSKU | null | 0.7821972190790509 | NRKHLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKN | - 81 42042 | AAGCGC | GT | M | null | -1038527991 | true | MSBKHRYXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZRA | null | 0.37288256822247545 | TKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKYANUQQSBHH | - 82 42652 | GTG | AC | P | null | 1557281811 | true | SFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHXQZJGMJQZLJFYKYFBXNSV | null | null | DYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFDSSXEVDGHUMRBMPSIPOELOIZ | - 83 43313 | GAGAA | ATACTTAGAA | R | null | 978785572 | true | null | null | 0.32522709311038844 | ULOETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAP | - 84 43685 | TA | CTGA | S | null | 1153307754 | true | UVXJVCQCBJLYOLUVOCIFUEZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNV | null | 0.17365479912109194 | LFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBU | - 85 44141 | ACG | CGCCATT | I | null | -999066038 | false | QVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXIWYNWPONALNRDOU | null | 0.8295755949338437 | null | - 86 44779 | CTATA | TGGAGT | R | null | null | false | VNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURGSXFJCAXCGZKZKGXUYPFWXONPKQUQOCSOLG | null | 0.7400197473135066 | YBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFW | - 87 45371 | GACTA | CC | K | null | 468567806 | true | RORVMYYKPYAM | null | 0.11273881633613159 | IGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQ | - 88 45571 | TAACTC | GCC | F | null | -287500759 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.8056508189855021 | EGYAKQZXEGXNLLREPZFWVCTQTH | - 89 46066 | GGCAG | AAA | C | null | -493586842 | true | AHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGT | null | 0.612124337258956 | UNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPI | - 90 46985 | TAG | CTTA | W | null | 351786237 | null | XUNGJITKBVEEPVVKXCSIXIBPDCIIEIJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVVK | null | 0.27826706664560996 | AMVZAAQHDHBHFFAYFMRFB | - 91 47081 | TACCC | AGAG | E | null | -36353828 | true | KKJO | null | 0.0291007292139015 | TKZUZKDQYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWS | - 92 47907 | ATTCA | TCC | A | null | 613424168 | false | FSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMP | null | 0.2190837769941144 | YSMVTAGLUX | - 93 48226 | TAGC | GTATTATCGC | Q | null | 1202745151 | false | HMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZVCSKRHFAOHYQERO | null | 0.3656546516594086 | HTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAADWL | - 94 48416 | GA | ATTC | B | null | -1923088956 | false | NYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | null | 0.8751078883243962 | YOQUBORWBWITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYREHOBNQZAXRCSAFUCKBVTXSFZIRE | - 95 49291 | TCCT | GGG | B | null | null | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | - 96 49771 | TGGT | CAC | P | null | -1705231585 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | 0.03359993949940343 | null | - 97 50142 | TTCTA | GAAA | R | null | 789177677 | true | null | null | 0.42057612519588505 | NLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZAUQLGKFGNIUNTJWMMJQHSKQBSLLSGOWIMIRRBIEZVEAOMGJ | - 98 50305 | GGA | AAGG | G | null | -1078219233 | null | LOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIBFJARVKVELGNMJBSLVSOJJPATNF | null | 0.7680804977882877 | null | - 99 50789 | CTCC | TGATA | N | null | -1627198920 | false | JAJASVDEOFQ | null | 0.5578843763975981 | GYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEH | - -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.snpsift.tests.unit.TestCasesDataFrameMixed -[INFO] Running org.snpsift.tests.unit.TestCasesExtractFields -TestCasesExtractFields.test_31_ann(291): Test -TestCasesExtractFields.test_00(71): Test -TestCasesExtractFields.test_01(98): Test -TestCasesExtractFields.test_02(104): Test -TestCasesExtractFields.test_03(110): Test -TestCasesExtractFields.test_04(116): Test -TestCasesExtractFields.test_05(122): Test -TestCasesExtractFields.test_06(128): Test -TestCasesExtractFields.test_07(134): Test -TestCasesExtractFields.test_08(140): Test -TestCasesExtractFields.test_09(146): Test -TestCasesExtractFields.test_10(152): Test -TestCasesExtractFields.test_11(158): Test -TestCasesExtractFields.test_12(164): Test -TestCasesExtractFields.test_13(170): Test -TestCasesExtractFields.test_14(176): Test -TestCasesExtractFields.test_15(182): Test -TestCasesExtractFields.test_16(188): Test -TestCasesExtractFields.test_17(194): Test -TestCasesExtractFields.test_18(200): Test -TestCasesExtractFields.test_19(206): Test -TestCasesExtractFields.test_20(212): Test -TestCasesExtractFields.test_23(218): Test -TestCasesExtractFields.test_24(224): Test -TestCasesExtractFields.test_25(230): Test -TestCasesExtractFields.test_26(236): Test -TestCasesExtractFields.test_27(242): Test -TestCasesExtractFields.test_28(253): Test -TestCasesExtractFields.test_29(262): Test -TestCasesExtractFields.test_30(273): Test -TestCasesExtractFields.test_31(282): Test -TestCasesExtractFields.test_32(300): Test -TestCasesExtractFields.test_33(312): Test -TestCasesExtractFields.test_34(323): Test -TestCasesExtractFields.test_35(340): Test -[INFO] Tests run: 35, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in org.snpsift.tests.unit.TestCasesExtractFields +[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.664 s - in org.snpsift.tests.unit.TestCasesFilter [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameSnp DataFrame: SNP_A, size: 100, current index: 100, memory: 63.4 KB Field types: @@ -3405,70 +3091,8 @@ 98 47093 | C | T | E | null | 653352657 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.08956523678408113 | QTH | 99 47588 | C | T | Z | null | 1873761820 | false | YNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVR | null | 0.9680541190017328 | UCFAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPIFIBAHZYTPM | -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.snpsift.tests.unit.TestCasesDataFrameSnp -[INFO] Running org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache -TestCasesDbNsfp.test_01(113): Test -TestCasesDbNsfp.test_02(138): Test -TestCasesDbNsfp.test_03(160): Test -TestCasesDbNsfp.test_04(179): Test -TestCasesDbNsfp.test_05(200): Test -TestCasesDbNsfp.test_06(223): Test -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.997 s - in org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache -[INFO] Running org.snpsift.tests.unit.TestCasesVcfCheck -TestCasesVcfCheck.test_01(18): Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.snpsift.tests.unit.TestCasesVcfCheck -[INFO] Running org.snpsift.tests.unit.TestCasesEnumArray -EnumArray: length: 17 / 17, number of enums: 6 - 0: 'one' (1) - 1: 'two' (2) - 2: 'three' (3) - 3: 'four' (4) - 4: 'five' (5) - 5: 'three' (3) - 6: 'four' (4) - 7: 'five' (5) - 8: 'three' (3) - 9: 'four' (4) - -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.692 s - in org.snpsift.tests.unit.TestCasesEnumArray -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnString -DataFrameColumnString.resize(76): Converting column 'Test' to EnumArray. Found 6 enums found. Size before: 44 B, after: 5 B -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.367 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnString -[INFO] Running org.snpsift.tests.unit.TestCasesHwe -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.snpsift.tests.unit.TestCasesHwe -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnLong -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.091 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnLong -[INFO] Running org.snpsift.tests.unit.TestCasesBoolArray -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.379 s - in org.snpsift.tests.unit.TestCasesBoolArray -[INFO] Running org.snpsift.tests.unit.TestCasesFilterGt -TestCasesFilterGt.test_01(28): Test -TestCasesFilterGt.test_02(62): Test -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesFilterGt -[INFO] Running org.snpsift.tests.unit.TestCasesGt -TestCasesGt.test_01(25): Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.snpsift.tests.unit.TestCasesGt -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnFloat -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.191 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnFloat -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnBool -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.692 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnBool -[INFO] Running org.snpsift.tests.unit.TestCasesSort -TestCasesSort.test_01(30): Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesSort -[INFO] Running org.snpsift.tests.unit.TestCasesLd -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesLd -[INFO] Running org.snpsift.tests.unit.TestCasesPrivate -TestCasesPrivate.test_01(48): Test -TestCasesPrivate.test_02(59): Test -TestCasesPrivate.test_03(70): Test -TestCasesPrivate.test_04(81): Test -TestCasesPrivate.test_05(89): Test -TestCasesPrivate.test_06(95): Test -TestCasesPrivate.test_07(101): Test -TestCasesPrivate.test_08(107): Test -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.snpsift.tests.unit.TestCasesPrivate -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnInt -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.81 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnInt -[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateMem +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.snpsift.tests.unit.TestCasesDataFrameSnp +[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateTabix TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test @@ -3511,125 +3135,9 @@ TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test -[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.874 s - in org.snpsift.tests.unit.TestCasesAnnotateMem -[INFO] Running org.snpsift.tests.unit.TestCasesSplit -TestCasesSplit.test_01(28): Test -TestCasesSplit.test_02(58): Test -TestCasesSplit.test_03(84): Test -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesSplit -[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameIns -DataFrame: INS, size: 100, current index: 100, memory: 63.4 KB - Field types: - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - ##INFO= - 0 130 | | GACTC | W | null | 392236186 | false | FFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUV | null | 0.36878291341130565 | ZVMGTYMKSHHVG | - 1 1113 | | CAG | Y | null | 1248616208 | true | EGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQ | null | 0.805730942661998 | IHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGL | - 2 2034 | | TGA | H | null | 2096791762 | false | UVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOET | null | 0.20057805982204702 | XLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKT | - 3 2775 | | TCTGG | R | null | 416003605 | false | CTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBK | null | 0.20222269912693658 | QDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXA | - 4 3709 | | GTT | A | null | -2030386360 | false | NJEPJICSFDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKD | null | 0.9001801157494951 | DCZNFMRXEWAMVAFWWRYGGOTPRS | - 5 4212 | | AAAGGT | N | null | -343155651 | true | IKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZR | null | 0.1015136969559961 | RDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQ | - 6 4241 | | CGT | W | null | -1117389689 | true | null | null | 0.6213511710359201 | LBJTOPXYAVBUFKFXCYZJXGYVICKOAMFVVWSPTNCGQIEMXRMHTEIGR | - 7 4605 | | TCTCG | G | null | -1170372084 | false | TZPNIWMONL | null | 0.47810166001754617 | TUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPO | - 8 4989 | | AAAT | B | null | 1856078580 | false | XNMTUYJPZYRUZCWFGZVEUUGMRBHYLGVDHQHETXOLCKQWDSOOPYFTKEUSOFRMKCHTCDASCZBWYYWFGVFTKARFUSEWVKGO | null | 0.357239736902605 | YMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVUDHD | - 9 5739 | | AGAAT | X | null | 82125448 | true | QIYBBUBAZLCDFWYENCGBPHXSRWAOUSCYHUHUBGDWQETIVGKEMLV | null | 0.5895111591883899 | LZVCADPXDFSLLACZQMHEWEYJWJWQVRQKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSW | - 10 6339 | | AGTT | I | null | 1487791715 | false | ZWLITSIB | null | 0.4546689517646505 | QHTZFSFVYK | - 11 6409 | | CA | S | null | 1763965218 | true | XLOBWQRTANIBWUKCXIEUXXTAZJ | null | 0.007031523778798898 | FIYNIVADIWAXPTXTVODSUOZTPWRVHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZG | - 12 7233 | | ATGCT | Q | null | -1705138200 | false | ZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSN | null | 0.7645424751954817 | AEJFNLPAVTXNBSMPGICZGSAAKUXYRDHISDKIKEXJRDMJIBLOBLSKDWFONVIKAEYDXPO | - 13 7870 | | GCCT | H | null | 353184724 | false | | null | 0.2791777177971343 | ATIARJNANENEUPMRUWTMUTOOPMQNUGIHZTBJTLIFFBHNWHX | - 14 8682 | | GTA | Y | null | 411614493 | null | YXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOC | null | 0.982808162985235 | KN | - 15 9587 | | TAGC | A | null | -152282141 | true | ZUEFDEJNV | null | 0.8385493805073976 | SOP | - 16 10532 | | AA | P | null | -1558269714 | true | WHBLPLKJKWNFXJF | null | 0.28736669172469376 | OXPYASMSHLSHBDGHYGPIRBDKXCPUUXUBSELUPR | - 17 11463 | | TATCAA | W | null | -384510011 | false | NNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOV | null | 0.6371545550232023 | HKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQ | - 18 11520 | | AAGCAT | P | null | 2074911081 | true | HUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBL | null | 0.6872285243865529 | INZHSRJSFVGSMSRVAWKXGXIITFR | - 19 12303 | | TCAA | K | null | 1170265868 | true | QYRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJSAMYSFHFDOWTMCRLMYTTAVQ | null | 0.8333157560452243 | null | - 20 12973 | | GCCG | D | null | 115966875 | true | GPCRPYIKDMFUPNFRTNVP | null | 0.8139963787551981 | ZLOHQRTHZUBYWZORERPCZFUSOSSEKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEF | - 21 13953 | | CC | Y | null | 859044042 | false | OCPCAQQYHVYMSZDYZLGDMWLBJJADJNZBAVOBMTNXMJZATPEZATDQXXMYLARYBPGPAPLSOYB | null | null | XXWSJZQXNQOQTVATSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQR | - 22 14607 | | AGGTAC | L | null | 941788784 | false | XDPIKBKIANCKLACLYINUQMDKFXDI | null | 0.6624030276873565 | MCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJ | - 23 14825 | | TACGC | R | null | -2074325123 | true | TMUPXGOVUIDXQKLPRET | null | 0.018681289917958255 | WXBHOJWCYZUUUVSTMVQTOL | - 24 15691 | | ACA | W | null | 252862157 | true | RXWUDPVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTMXOVRAGOTTXTCDDIX | null | 0.8168426301088789 | WXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGVOADMY | - 25 16531 | | CT | X | null | 1665655642 | false | GNGFXOY | null | null | VWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPN | - 26 17527 | | CCCGAG | F | null | null | true | TUTUSRRDMJNIGBCJUBZXLDNN | null | 0.5822841538996832 | YLCD | - 27 17938 | | TTA | W | null | -1600039699 | true | null | null | 0.32403626900832316 | WDHOYTRBOKNAZOGGLAHUDG | - 28 18033 | | ATCAT | A | null | 1645484388 | false | FFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPBUDSQGLOBMZVVFLNSWMQXUCJTEKJBHRBK | null | 0.209445808007097 | WIFOJXYYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELVHMRKLLCG | - 29 18069 | | AAGTGG | null | null | 641853241 | false | GXUEAFPGVRPBB | null | 0.9492585897886805 | MMVQSQTSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEB | - 30 18925 | | ATGAGA | G | null | -1415227265 | true | UXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRPSISCUD | null | 0.5796633000167881 | MMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQ | - 31 19488 | | CCA | H | null | -943628690 | false | NEDJSAMHXJDPHXFJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXB | null | 0.3113658731648862 | DVXAMQMWWROUPEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYV | - 32 19537 | | AGGCGA | Q | null | 1251603443 | false | null | null | 0.5257286882896216 | GPCOYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLI | - 33 19780 | | GGA | null | null | null | true | UXJCGASKRFLVSUERWOAEHZWLSQJATLMHBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZ | null | 0.2230352688593391 | null | - 34 20604 | | AAT | L | null | 356208355 | false | null | null | 0.5020444853612951 | MXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNN | - 35 20862 | | ACT | T | null | -660348769 | true | XRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIU | null | 0.34360523073670424 | QMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZQAMTRPVRW | - 36 20881 | | GTCCT | Q | null | 1228241393 | true | CUCQXBOMEYSHEELIYNVOKDHIXALLPUSA | null | null | MCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHWPTPDSDLDEGQHTUUHBYSKXKDGWD | - 37 20979 | | TCC | F | null | -1865060559 | false | EAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOY | null | null | UVDIAXJXSRAABIXFMQFNGHX | - 38 21774 | | AG | I | null | 1214916171 | true | null | null | 0.14525940093796808 | KMIVESHZXXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOER | - 39 22146 | | ATCT | F | null | -33582533 | false | CHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKC | null | 0.7079952995511792 | JJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUY | - 40 22171 | | TCGT | K | null | -1463321969 | true | null | null | 0.7829445841041348 | null | - 41 22799 | | TCG | N | null | -1055384584 | true | PSQQOQTKLV | null | 0.06566831133672113 | SVAQLBASZKUOAQXSZYHTFPESQNYFKQ | - 42 23368 | | ACGCTG | W | null | 731584253 | true | XJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUOIJTCPZTXKZAMMIUSG | null | 0.048538059777159304 | RRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMY | - 43 23897 | | GC | Q | null | 1411429955 | true | JUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLR | null | 0.7530274401586365 | HJFIMPPDVZXFSSIZVMSEVENLFRCLO | - 44 24368 | | GGGCGC | T | null | 1231169964 | false | XSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJ | null | 0.23882485221390193 | AXHWOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDKTYCLAZVIC | - 45 24399 | | GATCTC | A | null | 2006361315 | true | VOVQ | null | 0.33097788987005283 | BQXLOOINVKQYHMPA | - 46 24971 | | GAT | null | null | 1172063121 | null | SUDFREILZDQY | null | 0.393494187985291 | G | - 47 25760 | | TCCTGC | Z | null | -352846139 | true | LNSWYQIJLEMSYPRLUMZYSM | null | 0.8566224034706998 | PFDMLTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWR | - 48 26121 | | TGTTT | J | null | null | true | SKNTNRRWSWPOQJYEQWTHBQXHRKWBEPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDC | null | 0.10357285179981146 | null | - 49 26452 | | CCG | K | null | -1807694237 | false | FNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVP | null | 0.3354411676849467 | C | - 50 26526 | | CGG | W | null | -72850326 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.7967442732591338 | EKPQSARFFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSFLFTPMDXIFUGVSFLODMYZHIL | - 51 27174 | | GCCG | W | null | null | true | UEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNONXNRMRDSFQOYVQPTTMGBOOHSFOWUIJURGROVHDGOLLV | null | 0.6066375620808753 | ZRIJLEGPLJGZK | - 52 27844 | | ATA | T | null | 1372927724 | true | PZLVEDGKFHPAFTMIKDCKW | null | 0.21487970910288356 | KSCNVRUEZJVGIUWTXHUDCOQ | - 53 27861 | | AG | R | null | 1390363635 | false | IDIWXCNWIISITBTVMNPAYTHIPNCKCARBOCHEUDXOHXBO | null | 0.11814515756399246 | | - 54 28452 | | CTATTT | J | null | 1766551354 | false | JKBPLEWXUAUU | null | 0.2813757556627646 | GI | - 55 29004 | | CGT | R | null | 1223664887 | true | KZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZTOJMMUPECSV | null | 0.24077856032548373 | BQJIXFRTNVCQIBZZQJAARJSGJOTHKAVFTWIUOIHRTVRUYF | - 56 29577 | | TT | null | null | -1150139141 | false | HXADISRKTIKXY | null | 0.2091512021346421 | VFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZGOEXFH | - 57 30447 | | CCCA | E | null | 1869461585 | false | YEASQAPHIVZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNB | null | 0.5355040682130194 | HDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMB | - 58 31106 | | GGTAA | L | null | -1508617016 | false | KVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPETBDVJSQBAQBCZIHQFIG | null | 0.07320212412633109 | BLQWQTZGEERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOW | - 59 31573 | | CTGCGC | Q | null | 1571851493 | false | HDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRLEXDSRBZJGXWOWHUPII | null | 0.4386539601851286 | EEGLMSAWQTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPH | - 60 31615 | | TAGGT | N | null | -2016612795 | false | NSROCBCLTAXWNYPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQDLSFTTMPMZPSCZTRZLGJQQUKIIAPGAD | null | 0.1310981753882957 | DKOMRLKHNSPEVN | - 61 31948 | | TGCG | null | null | 1344148300 | true | KAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPB | null | 0.5842806130061003 | ALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEH | - 62 32257 | | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | - 63 32888 | | TTC | P | null | -1774917499 | false | EVABQVGYCHUOTAEUPCXSMJBZNDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNI | null | 0.47228181628336274 | OBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCDAWFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEP | - 64 33812 | | CGC | W | null | 901085161 | true | JJKHDMASERCYWA | null | 0.4163303952758649 | ZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOFRZAWQCTHQNXHDVMXZWXANQSZ | - 65 34662 | | ACGG | Y | null | -938444986 | true | BFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLEYB | null | 0.9407833954772991 | null | - 66 35254 | | TCGA | C | null | -1971349990 | false | BNEVBDRXIXKVQHAMWTPLWPN | null | 0.6169287820253964 | ZOISZGQEGO | - 67 35973 | | AGTCA | R | null | -1785568496 | true | TFRATSTVGMMNADVITTBCUBYQEBQREDVK | null | 0.46702535450962157 | FAHKHSJBEALCXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXHBDBIDKXP | - 68 36029 | | TAA | I | null | null | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | - 69 36424 | | AAAT | null | null | 731496163 | true | IARM | null | 0.24726460602879008 | HBLGOAIHYNPLTFNBOQDFQOSGIMGDVID | - 70 36697 | | TGC | P | null | -1784374440 | false | ULBRVHWTPPXLD | null | 0.9767443437342928 | WYRVDDYVZKYHE | - 71 36781 | | TTTCT | W | null | -626578806 | null | NAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCR | null | 0.5825804546132891 | XIOZZRBJJIUCGRJFDBUXNZ | - 72 37733 | | GCCTTC | E | null | 74119738 | true | EZDPHF | null | 0.2393563548507074 | null | - 73 38525 | | TACAT | A | null | -493531815 | false | JVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMV | null | 0.9468290018256974 | QVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDBT | - 74 39493 | | TG | I | null | -1080358974 | false | AHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGA | null | 0.07293217555193243 | WRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNG | - 75 40464 | | TC | B | null | -1895266390 | true | DMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLVFIECDHCJEXBP | null | 0.02613012878314258 | UTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABS | - 76 41209 | | GTTTGT | L | null | 1351870056 | true | null | null | 0.5198764636109314 | NTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKLGQIGRWFRRQPOKVFNLU | - 77 42149 | | CT | X | null | null | false | SCGDKYTEGYYTNJQBYHCWLKKNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOER | null | 0.7721649771204521 | BZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCU | - 78 42284 | | ATGTA | J | null | -597273619 | null | ULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZXHGROHWPSYMDCUYXFUMVUZPPY | null | 0.12562854211500862 | QUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIU | - 79 43116 | | GTCCG | H | null | -1183505179 | true | HEFPDIISRJLHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEANBDLHYXXFKJMJVZNNVT | null | 0.6498267424172269 | KBIKE | - 80 44066 | | TA | X | null | -123349300 | true | null | null | 0.14198551661486014 | GWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCHQQLSV | - 81 44869 | | TGT | N | null | -935455867 | false | DENAEMVIQ | null | 0.8050034418999328 | HLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKNBHTORFBZWSP | - 82 45374 | | CATAGT | Y | null | 128319085 | true | QQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAH | null | 0.944310006681651 | RLFULNBVZYMWMCWSNATKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKY | - 83 45794 | | GCC | D | null | -103662317 | true | E | null | 0.6836398150836674 | QMSSRMHZWJVVUOMBPVLGTNWXG | - 84 46251 | | AGT | I | null | null | false | IUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFD | null | 0.12377768791440902 | PGGYYEALDQDPRHSPDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWEI | - 85 46963 | | TCTTGC | I | null | 1786679007 | true | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | null | ALCSFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | - 86 47125 | | GTTTC | N | null | -1587699739 | true | QCBJLYOLUVOCIFUEZZGW | null | 0.6283732696129124 | DRXZBYFDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVX | - 87 47839 | | AA | null | null | -1042917316 | true | FFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAVYBXSVREX | null | 0.5413399443121274 | LJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVL | - 88 48232 | | AAAT | F | null | -887604636 | null | KXJIAKLYIUGICL | null | 0.6177093967642714 | CYFWSDUVNNDFUBOGYSZGEJGR | - 89 49227 | | AT | Z | null | -471111821 | true | null | null | 0.9656868712398303 | PFWXONPKQU | - 90 49693 | | GGTG | A | null | 1044117360 | false | XGQLGWRORVMYYKPYAMAZCXGYJCALSCGAZOEWAOGVKFINKYIWQEGYAKQZXEGXNLLREPZFWVCTQTHORMW | null | 0.07708649570475923 | TKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVT | - 91 50459 | | CCTAA | A | null | -1370440665 | false | AXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFX | null | null | IUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEEPCH | - 92 50481 | | GCG | R | null | 2066697767 | false | MWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCA | null | 0.872347902538948 | CSZJSNBGPIFIBAHZYTPMRBM | - 93 50858 | | CAT | H | null | -587101376 | false | MYCFSVUZWZMVVVAMVZAAQHDHBHFFAYFMRFBHJSXUNGJIT | null | 0.7620400986238222 | LYNCQJNXKGTZFGXFMSS | - 94 50860 | | CAGCA | I | null | 1098547523 | true | ESMQRCAXYFQXI | null | null | IJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVV | - 95 51603 | | TTAAT | G | null | 1908010737 | true | MVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMPTPSDIRXOPHWHAEEWOYVMXSL | null | 0.43238451506653686 | QYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELON | - 96 51648 | | CCATGC | N | null | -1749037701 | false | SVJIAGBAADWLGGNHMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZV | null | 0.24978790296557885 | RSJAEXCVDZTHLX | - 97 51910 | | TGGAT | F | null | 895867645 | true | EASCDWYPBMUTRLSEYOQUBORWBWITTSCTVWERU | null | 0.41222705817949823 | null | - 98 52327 | | ATCAGG | K | null | null | false | UBYREHOBNQZAXRCSAFUCKBVTXSFZIREOPSNYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJKZFB | null | 0.5758661835439116 | JHJMNUZVVGBGRNL | - 99 52862 | | TCGGGA | I | null | -1934920832 | false | OHYE | null | 0.6240226122495972 | UIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFG | - -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.snpsift.tests.unit.TestCasesDataFrameIns +[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.872 s - in org.snpsift.tests.unit.TestCasesAnnotateTabix +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnChar +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.517 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnChar [INFO] Running org.snpsift.tests.unit.TestCasesGwasCatalog TestCasesGwasCatalog.test_01(34): Test WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '19:16185558' already exists @@ -3660,7 +3168,55 @@ WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: Too many 'WARNING_DUPLICATE_PRIMARY_KEY' warnings, no further warnings will be shown. TestCasesGwasCatalog.test_02(50): Test -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.83 s - in org.snpsift.tests.unit.TestCasesGwasCatalog +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.619 s - in org.snpsift.tests.unit.TestCasesGwasCatalog +[INFO] Running org.snpsift.tests.unit.TestCasesFilterGt +TestCasesFilterGt.test_01(28): Test +TestCasesFilterGt.test_02(62): Test +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.snpsift.tests.unit.TestCasesFilterGt +[INFO] Running org.snpsift.tests.unit.TestCasesAnnotate +TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test +TestCasesAnnotate.test_29_repeated_IDs(618): Test +TestCasesAnnotate.test_01(145): Test +TestCasesAnnotate.test_02(153): Test +TestCasesAnnotate.test_03(161): Test +TestCasesAnnotate.test_04(169): Test +TestCasesAnnotate.test_05(181): Test +TestCasesAnnotate.test_06(192): Test +TestCasesAnnotate.test_07(217): Test +TestCasesAnnotate.test_08(232): Test +TestCasesAnnotate.test_09(245): Test +TestCasesAnnotate.test_11(273): Test +TestCasesAnnotate.test_12(300): Test +TestCasesAnnotate.test_13(320): Test +TestCasesAnnotate.test_14(340): Test +TestCasesAnnotate.test_15(356): Test +TestCasesAnnotate.test_16(372): Test +TestCasesAnnotate.test_17(390): Test +TestCasesAnnotate.test_18(415): Test +TestCasesAnnotate.test_19(428): Test +TestCasesAnnotate.test_20(439): Test +TestCasesAnnotate.test_21(453): Test +TestCasesAnnotate.test_22(479): Test +TestCasesAnnotate.test_24(509): Test +TestCasesAnnotate.test_25(539): Test +TestCasesAnnotate.test_35(693): Test +TestCasesAnnotate.test_36(711): Test +TestCasesAnnotate.test_38(732): Test +TestCasesAnnotate.test_39(743): Test +TestCasesAnnotate.test_40(762): Test +TestCasesAnnotate.test_41(770): Test +TestCasesAnnotate.test_42(781): Test +TestCasesAnnotate.test_43(809): Test +TestCasesAnnotate.test_44(835): Test +TestCasesAnnotate.test_45(861): Test +TestCasesAnnotate.test_33_empty_db(665): Test +TestCasesAnnotate.test_26_repeat_db_entry(568): Test +TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test +TestCasesAnnotate.test_28_exists(596): Test +TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test +TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test +TestCasesAnnotate.test_27_repeat_db_entry(580): Test +[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.354 s - in org.snpsift.tests.unit.TestCasesAnnotate [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameDel DataFrame: DEL, size: 100, current index: 100, memory: 63.4 KB Field types: @@ -3773,31 +3329,132 @@ 98 49907 | CAC | | P | null | 966658647 | true | KGDJSHWQNTLSEYGZ | null | 0.6885368220839251 | GTPFQOWDDNZNFTEUCOAEOMVYXBUMZTNLV | 99 50128 | CA | | E | null | 128095220 | false | NUJYTDVTSDBWKWGYBDKAHAQERJYIGNHYAUFUMIMLNOFPVQJAFDXGIRWIXOBXA | null | 0.4811475357641687 | ZGKNAOXKXJTBFDIJHRUHLXSCTNALYGQVYKSHPRPBNLLZYRIMNEOBUKWLLZRFRXCBJ | -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesDataFrameDel -[INFO] Running org.snpsift.tests.unit.TestCasesFilterALL -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 s - in org.snpsift.tests.unit.TestCasesFilterALL +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.snpsift.tests.unit.TestCasesDataFrameDel +[INFO] Running org.snpsift.tests.unit.TestCasesStringArray +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.249 s - in org.snpsift.tests.unit.TestCasesStringArray +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameIns +DataFrame: INS, size: 100, current index: 100, memory: 63.4 KB + Field types: + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + 0 130 | | GACTC | W | null | 392236186 | false | FFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUV | null | 0.36878291341130565 | ZVMGTYMKSHHVG | + 1 1113 | | CAG | Y | null | 1248616208 | true | EGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQ | null | 0.805730942661998 | IHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGL | + 2 2034 | | TGA | H | null | 2096791762 | false | UVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOET | null | 0.20057805982204702 | XLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKT | + 3 2775 | | TCTGG | R | null | 416003605 | false | CTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBK | null | 0.20222269912693658 | QDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXA | + 4 3709 | | GTT | A | null | -2030386360 | false | NJEPJICSFDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKD | null | 0.9001801157494951 | DCZNFMRXEWAMVAFWWRYGGOTPRS | + 5 4212 | | AAAGGT | N | null | -343155651 | true | IKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZR | null | 0.1015136969559961 | RDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQ | + 6 4241 | | CGT | W | null | -1117389689 | true | null | null | 0.6213511710359201 | LBJTOPXYAVBUFKFXCYZJXGYVICKOAMFVVWSPTNCGQIEMXRMHTEIGR | + 7 4605 | | TCTCG | G | null | -1170372084 | false | TZPNIWMONL | null | 0.47810166001754617 | TUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPO | + 8 4989 | | AAAT | B | null | 1856078580 | false | XNMTUYJPZYRUZCWFGZVEUUGMRBHYLGVDHQHETXOLCKQWDSOOPYFTKEUSOFRMKCHTCDASCZBWYYWFGVFTKARFUSEWVKGO | null | 0.357239736902605 | YMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVUDHD | + 9 5739 | | AGAAT | X | null | 82125448 | true | QIYBBUBAZLCDFWYENCGBPHXSRWAOUSCYHUHUBGDWQETIVGKEMLV | null | 0.5895111591883899 | LZVCADPXDFSLLACZQMHEWEYJWJWQVRQKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSW | + 10 6339 | | AGTT | I | null | 1487791715 | false | ZWLITSIB | null | 0.4546689517646505 | QHTZFSFVYK | + 11 6409 | | CA | S | null | 1763965218 | true | XLOBWQRTANIBWUKCXIEUXXTAZJ | null | 0.007031523778798898 | FIYNIVADIWAXPTXTVODSUOZTPWRVHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZG | + 12 7233 | | ATGCT | Q | null | -1705138200 | false | ZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSN | null | 0.7645424751954817 | AEJFNLPAVTXNBSMPGICZGSAAKUXYRDHISDKIKEXJRDMJIBLOBLSKDWFONVIKAEYDXPO | + 13 7870 | | GCCT | H | null | 353184724 | false | | null | 0.2791777177971343 | ATIARJNANENEUPMRUWTMUTOOPMQNUGIHZTBJTLIFFBHNWHX | + 14 8682 | | GTA | Y | null | 411614493 | null | YXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOC | null | 0.982808162985235 | KN | + 15 9587 | | TAGC | A | null | -152282141 | true | ZUEFDEJNV | null | 0.8385493805073976 | SOP | + 16 10532 | | AA | P | null | -1558269714 | true | WHBLPLKJKWNFXJF | null | 0.28736669172469376 | OXPYASMSHLSHBDGHYGPIRBDKXCPUUXUBSELUPR | + 17 11463 | | TATCAA | W | null | -384510011 | false | NNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOV | null | 0.6371545550232023 | HKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQ | + 18 11520 | | AAGCAT | P | null | 2074911081 | true | HUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBL | null | 0.6872285243865529 | INZHSRJSFVGSMSRVAWKXGXIITFR | + 19 12303 | | TCAA | K | null | 1170265868 | true | QYRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJSAMYSFHFDOWTMCRLMYTTAVQ | null | 0.8333157560452243 | null | + 20 12973 | | GCCG | D | null | 115966875 | true | GPCRPYIKDMFUPNFRTNVP | null | 0.8139963787551981 | ZLOHQRTHZUBYWZORERPCZFUSOSSEKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEF | + 21 13953 | | CC | Y | null | 859044042 | false | OCPCAQQYHVYMSZDYZLGDMWLBJJADJNZBAVOBMTNXMJZATPEZATDQXXMYLARYBPGPAPLSOYB | null | null | XXWSJZQXNQOQTVATSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQR | + 22 14607 | | AGGTAC | L | null | 941788784 | false | XDPIKBKIANCKLACLYINUQMDKFXDI | null | 0.6624030276873565 | MCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJ | + 23 14825 | | TACGC | R | null | -2074325123 | true | TMUPXGOVUIDXQKLPRET | null | 0.018681289917958255 | WXBHOJWCYZUUUVSTMVQTOL | + 24 15691 | | ACA | W | null | 252862157 | true | RXWUDPVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTMXOVRAGOTTXTCDDIX | null | 0.8168426301088789 | WXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGVOADMY | + 25 16531 | | CT | X | null | 1665655642 | false | GNGFXOY | null | null | VWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPN | + 26 17527 | | CCCGAG | F | null | null | true | TUTUSRRDMJNIGBCJUBZXLDNN | null | 0.5822841538996832 | YLCD | + 27 17938 | | TTA | W | null | -1600039699 | true | null | null | 0.32403626900832316 | WDHOYTRBOKNAZOGGLAHUDG | + 28 18033 | | ATCAT | A | null | 1645484388 | false | FFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPBUDSQGLOBMZVVFLNSWMQXUCJTEKJBHRBK | null | 0.209445808007097 | WIFOJXYYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELVHMRKLLCG | + 29 18069 | | AAGTGG | null | null | 641853241 | false | GXUEAFPGVRPBB | null | 0.9492585897886805 | MMVQSQTSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEB | + 30 18925 | | ATGAGA | G | null | -1415227265 | true | UXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRPSISCUD | null | 0.5796633000167881 | MMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQ | + 31 19488 | | CCA | H | null | -943628690 | false | NEDJSAMHXJDPHXFJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXB | null | 0.3113658731648862 | DVXAMQMWWROUPEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYV | + 32 19537 | | AGGCGA | Q | null | 1251603443 | false | null | null | 0.5257286882896216 | GPCOYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLI | + 33 19780 | | GGA | null | null | null | true | UXJCGASKRFLVSUERWOAEHZWLSQJATLMHBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZ | null | 0.2230352688593391 | null | + 34 20604 | | AAT | L | null | 356208355 | false | null | null | 0.5020444853612951 | MXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNN | + 35 20862 | | ACT | T | null | -660348769 | true | XRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIU | null | 0.34360523073670424 | QMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZQAMTRPVRW | + 36 20881 | | GTCCT | Q | null | 1228241393 | true | CUCQXBOMEYSHEELIYNVOKDHIXALLPUSA | null | null | MCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHWPTPDSDLDEGQHTUUHBYSKXKDGWD | + 37 20979 | | TCC | F | null | -1865060559 | false | EAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOY | null | null | UVDIAXJXSRAABIXFMQFNGHX | + 38 21774 | | AG | I | null | 1214916171 | true | null | null | 0.14525940093796808 | KMIVESHZXXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOER | + 39 22146 | | ATCT | F | null | -33582533 | false | CHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKC | null | 0.7079952995511792 | JJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUY | + 40 22171 | | TCGT | K | null | -1463321969 | true | null | null | 0.7829445841041348 | null | + 41 22799 | | TCG | N | null | -1055384584 | true | PSQQOQTKLV | null | 0.06566831133672113 | SVAQLBASZKUOAQXSZYHTFPESQNYFKQ | + 42 23368 | | ACGCTG | W | null | 731584253 | true | XJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUOIJTCPZTXKZAMMIUSG | null | 0.048538059777159304 | RRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMY | + 43 23897 | | GC | Q | null | 1411429955 | true | JUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLR | null | 0.7530274401586365 | HJFIMPPDVZXFSSIZVMSEVENLFRCLO | + 44 24368 | | GGGCGC | T | null | 1231169964 | false | XSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJ | null | 0.23882485221390193 | AXHWOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDKTYCLAZVIC | + 45 24399 | | GATCTC | A | null | 2006361315 | true | VOVQ | null | 0.33097788987005283 | BQXLOOINVKQYHMPA | + 46 24971 | | GAT | null | null | 1172063121 | null | SUDFREILZDQY | null | 0.393494187985291 | G | + 47 25760 | | TCCTGC | Z | null | -352846139 | true | LNSWYQIJLEMSYPRLUMZYSM | null | 0.8566224034706998 | PFDMLTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWR | + 48 26121 | | TGTTT | J | null | null | true | SKNTNRRWSWPOQJYEQWTHBQXHRKWBEPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDC | null | 0.10357285179981146 | null | + 49 26452 | | CCG | K | null | -1807694237 | false | FNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVP | null | 0.3354411676849467 | C | + 50 26526 | | CGG | W | null | -72850326 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.7967442732591338 | EKPQSARFFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSFLFTPMDXIFUGVSFLODMYZHIL | + 51 27174 | | GCCG | W | null | null | true | UEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNONXNRMRDSFQOYVQPTTMGBOOHSFOWUIJURGROVHDGOLLV | null | 0.6066375620808753 | ZRIJLEGPLJGZK | + 52 27844 | | ATA | T | null | 1372927724 | true | PZLVEDGKFHPAFTMIKDCKW | null | 0.21487970910288356 | KSCNVRUEZJVGIUWTXHUDCOQ | + 53 27861 | | AG | R | null | 1390363635 | false | IDIWXCNWIISITBTVMNPAYTHIPNCKCARBOCHEUDXOHXBO | null | 0.11814515756399246 | | + 54 28452 | | CTATTT | J | null | 1766551354 | false | JKBPLEWXUAUU | null | 0.2813757556627646 | GI | + 55 29004 | | CGT | R | null | 1223664887 | true | KZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZTOJMMUPECSV | null | 0.24077856032548373 | BQJIXFRTNVCQIBZZQJAARJSGJOTHKAVFTWIUOIHRTVRUYF | + 56 29577 | | TT | null | null | -1150139141 | false | HXADISRKTIKXY | null | 0.2091512021346421 | VFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZGOEXFH | + 57 30447 | | CCCA | E | null | 1869461585 | false | YEASQAPHIVZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNB | null | 0.5355040682130194 | HDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMB | + 58 31106 | | GGTAA | L | null | -1508617016 | false | KVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPETBDVJSQBAQBCZIHQFIG | null | 0.07320212412633109 | BLQWQTZGEERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOW | + 59 31573 | | CTGCGC | Q | null | 1571851493 | false | HDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRLEXDSRBZJGXWOWHUPII | null | 0.4386539601851286 | EEGLMSAWQTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPH | + 60 31615 | | TAGGT | N | null | -2016612795 | false | NSROCBCLTAXWNYPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQDLSFTTMPMZPSCZTRZLGJQQUKIIAPGAD | null | 0.1310981753882957 | DKOMRLKHNSPEVN | + 61 31948 | | TGCG | null | null | 1344148300 | true | KAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPB | null | 0.5842806130061003 | ALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEH | + 62 32257 | | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | + 63 32888 | | TTC | P | null | -1774917499 | false | EVABQVGYCHUOTAEUPCXSMJBZNDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNI | null | 0.47228181628336274 | OBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCDAWFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEP | + 64 33812 | | CGC | W | null | 901085161 | true | JJKHDMASERCYWA | null | 0.4163303952758649 | ZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOFRZAWQCTHQNXHDVMXZWXANQSZ | + 65 34662 | | ACGG | Y | null | -938444986 | true | BFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLEYB | null | 0.9407833954772991 | null | + 66 35254 | | TCGA | C | null | -1971349990 | false | BNEVBDRXIXKVQHAMWTPLWPN | null | 0.6169287820253964 | ZOISZGQEGO | + 67 35973 | | AGTCA | R | null | -1785568496 | true | TFRATSTVGMMNADVITTBCUBYQEBQREDVK | null | 0.46702535450962157 | FAHKHSJBEALCXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXHBDBIDKXP | + 68 36029 | | TAA | I | null | null | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | + 69 36424 | | AAAT | null | null | 731496163 | true | IARM | null | 0.24726460602879008 | HBLGOAIHYNPLTFNBOQDFQOSGIMGDVID | + 70 36697 | | TGC | P | null | -1784374440 | false | ULBRVHWTPPXLD | null | 0.9767443437342928 | WYRVDDYVZKYHE | + 71 36781 | | TTTCT | W | null | -626578806 | null | NAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCR | null | 0.5825804546132891 | XIOZZRBJJIUCGRJFDBUXNZ | + 72 37733 | | GCCTTC | E | null | 74119738 | true | EZDPHF | null | 0.2393563548507074 | null | + 73 38525 | | TACAT | A | null | -493531815 | false | JVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMV | null | 0.9468290018256974 | QVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDBT | + 74 39493 | | TG | I | null | -1080358974 | false | AHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGA | null | 0.07293217555193243 | WRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNG | + 75 40464 | | TC | B | null | -1895266390 | true | DMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLVFIECDHCJEXBP | null | 0.02613012878314258 | UTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABS | + 76 41209 | | GTTTGT | L | null | 1351870056 | true | null | null | 0.5198764636109314 | NTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKLGQIGRWFRRQPOKVFNLU | + 77 42149 | | CT | X | null | null | false | SCGDKYTEGYYTNJQBYHCWLKKNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOER | null | 0.7721649771204521 | BZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCU | + 78 42284 | | ATGTA | J | null | -597273619 | null | ULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZXHGROHWPSYMDCUYXFUMVUZPPY | null | 0.12562854211500862 | QUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIU | + 79 43116 | | GTCCG | H | null | -1183505179 | true | HEFPDIISRJLHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEANBDLHYXXFKJMJVZNNVT | null | 0.6498267424172269 | KBIKE | + 80 44066 | | TA | X | null | -123349300 | true | null | null | 0.14198551661486014 | GWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCHQQLSV | + 81 44869 | | TGT | N | null | -935455867 | false | DENAEMVIQ | null | 0.8050034418999328 | HLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKNBHTORFBZWSP | + 82 45374 | | CATAGT | Y | null | 128319085 | true | QQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAH | null | 0.944310006681651 | RLFULNBVZYMWMCWSNATKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKY | + 83 45794 | | GCC | D | null | -103662317 | true | E | null | 0.6836398150836674 | QMSSRMHZWJVVUOMBPVLGTNWXG | + 84 46251 | | AGT | I | null | null | false | IUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFD | null | 0.12377768791440902 | PGGYYEALDQDPRHSPDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWEI | + 85 46963 | | TCTTGC | I | null | 1786679007 | true | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | null | ALCSFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | + 86 47125 | | GTTTC | N | null | -1587699739 | true | QCBJLYOLUVOCIFUEZZGW | null | 0.6283732696129124 | DRXZBYFDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVX | + 87 47839 | | AA | null | null | -1042917316 | true | FFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAVYBXSVREX | null | 0.5413399443121274 | LJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVL | + 88 48232 | | AAAT | F | null | -887604636 | null | KXJIAKLYIUGICL | null | 0.6177093967642714 | CYFWSDUVNNDFUBOGYSZGEJGR | + 89 49227 | | AT | Z | null | -471111821 | true | null | null | 0.9656868712398303 | PFWXONPKQU | + 90 49693 | | GGTG | A | null | 1044117360 | false | XGQLGWRORVMYYKPYAMAZCXGYJCALSCGAZOEWAOGVKFINKYIWQEGYAKQZXEGXNLLREPZFWVCTQTHORMW | null | 0.07708649570475923 | TKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVT | + 91 50459 | | CCTAA | A | null | -1370440665 | false | AXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFX | null | null | IUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEEPCH | + 92 50481 | | GCG | R | null | 2066697767 | false | MWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCA | null | 0.872347902538948 | CSZJSNBGPIFIBAHZYTPMRBM | + 93 50858 | | CAT | H | null | -587101376 | false | MYCFSVUZWZMVVVAMVZAAQHDHBHFFAYFMRFBHJSXUNGJIT | null | 0.7620400986238222 | LYNCQJNXKGTZFGXFMSS | + 94 50860 | | CAGCA | I | null | 1098547523 | true | ESMQRCAXYFQXI | null | null | IJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVV | + 95 51603 | | TTAAT | G | null | 1908010737 | true | MVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMPTPSDIRXOPHWHAEEWOYVMXSL | null | 0.43238451506653686 | QYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELON | + 96 51648 | | CCATGC | N | null | -1749037701 | false | SVJIAGBAADWLGGNHMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZV | null | 0.24978790296557885 | RSJAEXCVDZTHLX | + 97 51910 | | TGGAT | F | null | 895867645 | true | EASCDWYPBMUTRLSEYOQUBORWBWITTSCTVWERU | null | 0.41222705817949823 | null | + 98 52327 | | ATCAGG | K | null | null | false | UBYREHOBNQZAXRCSAFUCKBVTXSFZIREOPSNYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJKZFB | null | 0.5758661835439116 | JHJMNUZVVGBGRNL | + 99 52862 | | TCGGGA | I | null | -1934920832 | false | OHYE | null | 0.6240226122495972 | UIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFG | + +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesDataFrameIns [INFO] Running org.snpsift.tests.unit.TestCasesVariantDatabase 1 1000 . A T . . ZZZ_FIELD_FLOAT=3.14;ZZZ_FIELD_STRING=Value1;ZZZ_FIELD_FLAG=false;ZZZ_FIELD_INT=123 [ZZZ_FIELD_FLOAT, ZZZ_FIELD_FLAG, ZZZ_FIELD_INT, ZZZ_FIELD_STRING] [FIELD_FLOAT, FIELD_STRING, FIELD_FLAG, FIELD_INT] -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.snpsift.tests.unit.TestCasesVariantDatabase -[INFO] Running org.snpsift.tests.unit.TestCasesConcordance -TestCasesConcordance.test_01(68): Test -TestCasesConcordance.test_02(74): Test -TestCasesConcordance.test_03(80): Test -TestCasesConcordance.test_04(91): Test -TestCasesConcordance.test_05(102): Test -TestCasesConcordance.test_06(113): Test -TestCasesConcordance.test_07(125): Test -TestCasesConcordance.test_08(131): Test -TestCasesConcordance.test_09(142): Test -TestCasesConcordance.test_10(153): Test -TestCasesConcordance.test_11(164): Test -TestCasesConcordance.test_12(181): Test -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in org.snpsift.tests.unit.TestCasesConcordance -[INFO] Running org.snpsift.tests.unit.TestCasesPosIndex -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesPosIndex -[INFO] Running org.snpsift.tests.unit.TestCasesAnnotate +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.snpsift.tests.unit.TestCasesVariantDatabase +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnLong +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.86 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnLong +[INFO] Running org.snpsift.tests.unit.TestCasesLd +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesLd +[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateUseIndex TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test @@ -3840,7 +3497,386 @@ TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test -[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.467 s - in org.snpsift.tests.unit.TestCasesAnnotate +[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.187 s - in org.snpsift.tests.unit.TestCasesAnnotateUseIndex +[INFO] Running org.snpsift.tests.unit.TestCasesIntervals +TestCasesIntervals.test_01(25): Test +TestCasesIntervals.test_02(50): Test +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesIntervals +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMixed +DataFrame: MIXED, size: 100, current index: 100, memory: 63.4 KB + Field types: + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + 0 130 | GACTC | ATGCTTTTACC | H | null | 1660292060 | true | VGUIHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGLETAEGILYUTDVAIFEOZYGHKA | null | 0.1505474834792303 | FVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPLWOJYB | + 1 719 | AA | TTTCATAC | D | null | null | false | null | null | 0.2821982861306481 | null | + 2 1667 | GGCGTG | ACG | N | null | null | true | KT | null | 0.6610508916166571 | MFMQTLZADZBNDXVFRJHSDKMELBXLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSR | + 3 2408 | GCGG | TGA | X | null | -926287273 | false | ETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXAIMKCTVQNSDPJFZM | null | 0.6053218598587271 | CTXUKSW | + 4 2905 | CAGGA | TGTC | C | null | -2110639781 | false | BKSLLDJGZKGHDVQLAAK | null | 0.0987491349432944 | LUYOJPARNUOSX | + 5 3569 | TACATC | GGTTA | Y | null | -1619827948 | true | FDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKDDP | null | 0.6958254788801048 | HRUNJEPJ | + 6 3942 | AGG | GC | E | null | 1759468634 | true | POXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQ | null | 0.31191986699310315 | GKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKG | + 7 4309 | GCGT | TGTGGA | B | null | 1001974229 | false | AMFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQ | null | 0.9430161143370018 | OPXYAVBUFKFXCYZJXGYVI | + 8 5266 | CCA | GGCC | G | null | -1921530556 | true | GOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWY | null | 0.4442576436641098 | QAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKI | + 9 5514 | TAG | CC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | + 10 6338 | AG | CTCG | M | null | -536631031 | false | FHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUC | null | 0.6880295632898734 | SCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJWQVRQ | + 11 6556 | GACGG | TCGATA | Y | null | -1809889978 | false | null | null | null | XSRWAOUSCYHUHUBGDWQETIVGKEMLVCL | + 12 7530 | GCCTC | TTTA | F | null | 125900821 | false | KFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAE | null | 0.040427108343605966 | WLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZTPWRVHQM | + 13 7848 | GCTTTT | TGAA | V | null | 552048597 | false | null | null | 0.2229941719444838 | GIC | + 14 8230 | GC | ATC | X | null | -1901567179 | false | AITLYHHFQB | null | 0.9281005456025566 | LOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSNTPANSIG | + 15 9168 | CGGG | GTCCG | U | null | -1414511684 | true | TIMJZ | null | null | PMQNUGIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYV | + 16 9658 | ACG | TGCCC | H | null | -192898018 | true | null | null | 0.4896099581558816 | WHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOCPKFQIYOKFUCMTYDAXAWLEPFSOPHVFZUEFDEJNVDJVDIURYCMIRNPAQXDX | + 17 10210 | CTCT | GCT | I | null | -374215497 | false | QABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGF | null | 0.16071858764042235 | UUXUBSELUPRBRXWHBLPLKJKWNFXJFPCSFTBCOGQ | + 18 10777 | AGAA | CAGCT | O | null | 779853740 | false | RJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRAB | null | 0.792349918144592 | XGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFIN | + 19 11693 | ACTGCC | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | + 20 12285 | TGCACA | CA | V | null | null | true | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | null | 0.6271643404105325 | null | + 21 12310 | ACGTGT | CTTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | + 22 13067 | GT | AAAACT | null | null | -1111392265 | null | LPNFFRJWMCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOV | null | 0.6293056149475463 | TDQXXMYLARYBPGPAPLSOYBUKFPBAFIBSUFQU | + 23 13721 | CCTTC | GGC | I | null | -479647117 | true | null | null | 0.975556283988524 | IANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUUVSTM | + 24 14152 | TTCCTC | CCG | P | null | 446527421 | false | IUXDNSLHWUDRUSZUWXBVOU | null | 0.7515769772774136 | null | + 25 14934 | GAG | ACCC | L | null | null | false | PVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTM | null | 0.5907961912348977 | JNJFGBQRLQGVCFGVOADMYOHSRX | + 26 15751 | TA | CCT | J | null | 1599579110 | true | PLGGEVWJSEISSN | null | 0.4264956752414417 | HK | + 27 16453 | GGG | CC | Q | null | 167756937 | false | YPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCS | null | 0.07643741004951432 | | + 28 16633 | GG | CTCA | H | null | -1598495659 | true | MJNIGBCJUBZXLDNNXPCVBJPSNJTEHOWCPZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIOBZJSTXAOFYSGHZWIFOJXYYHZGVI | null | 0.37999657635046324 | | + 29 17489 | CTG | GACCA | D | null | -1354298566 | true | LCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYW | null | 0.9746654097927338 | PMURZGGYMIELVHMRKLLCGOGZ | + 30 17606 | TGTAG | CCACAGAAGC | V | null | 1878366945 | true | TSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQ | null | 0.3397356585960569 | XUCJTEKJBHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMV | + 31 18076 | GCT | CTCG | P | null | -1494948578 | false | KXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXN | null | 0.7635122604571503 | ZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIGIACWWMBNSJU | + 32 18957 | TGTG | GT | C | null | 1406916527 | true | FHE | null | 0.3484911209670729 | | + 33 19938 | ATCT | TGAAC | O | null | 1149795017 | null | NTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXBPTXHXONSYUZUFENSQQWZ | null | null | KRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJ | + 34 20585 | TA | GTCA | G | null | null | false | WOAEHZWLSQJATLMHBLMPH | null | 0.9344242335487438 | GCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVS | + 35 21560 | GA | TTA | H | null | -205155770 | null | null | null | null | JDWQYQEYTRZGFJYAWMGVKTNMFTZSO | + 36 21988 | AA | GGGT | F | null | -1432480630 | true | TILJJSHAQMNRS | null | 0.3133917870266195 | BMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOP | + 37 22427 | CCCACG | TTGT | E | null | 860447657 | true | LHWZQAMTRPVRWFEGXRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTC | null | 0.694454522391098 | null | + 38 22883 | CGA | TCGTGTTGCA | U | null | -1787101930 | true | YNVOKDHIXALLPU | null | 0.36980056706464903 | DGWDDGQCUCQXBOMEYSHE | + 39 23461 | TGTCC | CA | B | null | -1176210216 | false | SRAABIXFMQFNGHXLSOEAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOYV | null | 0.3517610111383015 | null | + 40 23891 | GATC | TCG | K | null | -2118220436 | true | TOZFRCDZWFXPYAZDFJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMY | null | 0.6397097529450779 | XXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOERGUMYY | + 41 24581 | CGG | TTTT | A | null | 426196393 | false | KUOAQXSZYHTFPESQNYFKQEPAP | null | 0.5332729085977445 | IVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQMAPZOPDSXSKNPUUTRASSVAQLB | + 42 24617 | AGAG | GACCT | null | null | -298680206 | false | COPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQXJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUO | null | 0.9217536754688332 | UYRRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYB | + 43 25109 | AAT | TCAGT | S | null | -1807342243 | true | PKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOV | null | 0.028187333666930825 | QHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOT | + 44 25687 | GA | CGCCCC | R | null | 1025744915 | true | LAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJDP | null | 0.761817576180882 | WOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDK | + 45 25708 | TC | GTCTC | null | null | 1837325288 | false | null | null | 0.7695808495019865 | OOINVKQYHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQ | + 46 26557 | CC | GAA | Z | null | 1120279121 | false | LTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNR | null | 0.8524057650440213 | null | + 47 27162 | GTAG | TCGTT | Z | null | 52752038 | true | BPZBSVD | null | 0.8135675453387192 | KD | + 48 27375 | CAA | ACGTT | O | null | 350350448 | false | null | null | 0.03426922763719786 | JAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNC | + 49 27499 | AAG | TGCAGT | A | null | 23904471 | false | null | null | 0.555524367802816 | NYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOEXCNXBDIORIOEWPXUPJBBEKPQSARFFXUWDNIYWXADIYLUONTQ | + 50 27892 | TT | GGAG | Z | null | 980648983 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.9356403643683727 | DXIFUGVSFLODMYZHIL | + 51 28540 | GCCG | AG | D | null | -1499042282 | false | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | null | 0.2701407767298879 | null | + 52 29421 | GGTC | AAGGGG | H | null | -1649570894 | true | DFFUUTDDXURSPKSC | null | 0.5873439005542106 | URGROVHDGOLLVMWBULF | + 53 30224 | TAT | AGGC | O | null | null | false | null | null | 0.07495722896453205 | VEDGKFHPAFTMIKDCKWPZQGZKFCTREWKRHVHNGEOUBUIDIWX | + 54 31106 | GCAA | TA | C | null | -130152109 | true | PXLEGILTKJKBPLEWXUAUUEGQTKNBBOPMKWBRCLYRX | null | 0.8287913220463654 | UDXOHXBODYUAKYGAHTLQELXYTJ | + 55 31183 | GGA | CA | Z | null | 2067688714 | true | CKZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVT | null | 0.24977730671660292 | GJOTHKAVFTWIUOIHRTVRUY | + 56 31297 | ATTG | TG | R | null | 1742753232 | false | NSIEYGJ | null | 0.7375087780942288 | MUPECSVBKGRQSNGD | + 57 31496 | AGGAAT | GT | I | null | 2017697704 | true | FHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGN | null | 0.3831208851383727 | EBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZG | + 58 32442 | GCCCG | TAAGTT | A | null | -1205957868 | false | EERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOWLPEKVRDEKAKMMIVCNFXLMUOOKIR | null | 0.8878475241886875 | ZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCIPPPILVEHYJBDBLQWQ | + 59 33428 | GG | CCTATG | null | null | 1219143705 | false | NVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPP | null | 0.7441218930581249 | HHGTIVJGFPETBDVJSQBAQBCZIHQFIGJUIQDVGBKHIBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFE | + 60 33855 | AGTTTG | GCG | D | null | -2022598863 | false | SRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTAXWNYPFV | null | null | DZLRXCLXTZSXTKYSTMBQGGRL | + 61 33915 | ACGC | TACGACCGTGT | H | null | -1128367852 | null | TMPMZPSCZTRZLGJ | null | 0.5491902435953122 | null | + 62 34483 | TAGC | CGCGAT | null | null | -1557358100 | true | CYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEI | null | 0.31295892252145074 | CGZALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJK | + 63 34709 | CCC | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | + 64 35340 | TTC | GGACA | K | null | -166905458 | true | WFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBG | null | 0.8602483882443271 | NPJBGGWENLYYCJTPADCDDQOGHMOVVSZJD | + 65 35472 | TGAGGC | GCGAA | E | null | -1631313891 | true | NDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXV | null | 0.12363944563302387 | null | + 66 35669 | ATTGA | TCCTCA | C | null | -588298380 | false | IQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJBEA | null | 0.8550234837562305 | VMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLE | + 67 35728 | GAACCT | CTTT | H | null | -747544882 | null | IDKXPHFOTFRATSTVGMMNADVITTBCUBYQE | null | 0.7490687548616841 | OMXYIBMPQHOMYJBNEODMVEEFBCTJXH | + 68 36183 | AC | CATTA | I | null | -1319632117 | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | + 69 36578 | AAAT | GGCAT | R | null | null | false | GDVIDDYSIARMFNRXIDQWTWJFLQPICW | null | 0.43186967699327505 | HYNPLTFNBOQDFQOS | + 70 36971 | ACTTG | GG | null | null | 1277958572 | false | DARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZDPHFWRRBUMUSFMSQDSIHADOFZLPCQVYZEBMKVBMFPHNELK | null | 0.4453573989044963 | TPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQD | + 71 37618 | TTAG | CAG | B | null | 1037393841 | false | BHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDB | null | 0.39609232226749236 | null | + 72 38201 | TAC | ACGTC | D | null | -2079477320 | false | ZGJVDJEEACE | null | 0.07742081110010546 | YUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLLIVKIMHNAJEWWRVWIZSG | + 73 38493 | GCCTG | CAGA | H | null | -1463798583 | null | KVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRG | null | 0.9277467500723097 | | + 74 38540 | GGA | TATT | J | null | -1689361592 | true | IUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLV | null | 0.8092660381674348 | KTOJGDTUTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSW | + 75 39183 | AG | CTTTG | R | null | -1961645317 | false | UHAVSYGXMMWZ | null | 0.7538616470122224 | LYWEJMYHNTTSXXCLCCPJRBGGEOPFR | + 76 39799 | GT | AAT | null | null | -110423199 | false | TENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCUOEWSCGDKYTEGYYTNJQB | null | 0.12046287233320274 | IYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJ | + 77 40229 | TTGTTT | CCAA | V | null | 1431130355 | false | KLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIUBJHULZAQBBRFRJGAZJ | null | 0.7558427773660447 | BVHLRZZCIVSXZRKBEOERVKNQMYPBSUHNQKRZJLAUPUQUKFCWVILOI | + 78 40732 | CTCC | AATGT | G | null | 587644912 | true | LHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEAN | null | 0.4224823862977449 | MDCUYXFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDII | + 79 41491 | CACA | ACTGCTTCG | H | null | -554956194 | false | OLXJAFLXULPZGOHHPVYKONTTVCOQ | null | 0.5208315202141268 | LOGWYTQNLEWXWB | + 80 41770 | AAAT | CTGATTAGAC | W | null | -985447616 | true | ORFBZWSPFYBDENAEMVIQZBDVRTNVQWSKU | null | 0.7821972190790509 | NRKHLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKN | + 81 42042 | AAGCGC | GT | M | null | -1038527991 | true | MSBKHRYXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZRA | null | 0.37288256822247545 | TKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKYANUQQSBHH | + 82 42652 | GTG | AC | P | null | 1557281811 | true | SFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHXQZJGMJQZLJFYKYFBXNSV | null | null | DYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFDSSXEVDGHUMRBMPSIPOELOIZ | + 83 43313 | GAGAA | ATACTTAGAA | R | null | 978785572 | true | null | null | 0.32522709311038844 | ULOETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAP | + 84 43685 | TA | CTGA | S | null | 1153307754 | true | UVXJVCQCBJLYOLUVOCIFUEZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNV | null | 0.17365479912109194 | LFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBU | + 85 44141 | ACG | CGCCATT | I | null | -999066038 | false | QVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXIWYNWPONALNRDOU | null | 0.8295755949338437 | null | + 86 44779 | CTATA | TGGAGT | R | null | null | false | VNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURGSXFJCAXCGZKZKGXUYPFWXONPKQUQOCSOLG | null | 0.7400197473135066 | YBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFW | + 87 45371 | GACTA | CC | K | null | 468567806 | true | RORVMYYKPYAM | null | 0.11273881633613159 | IGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQ | + 88 45571 | TAACTC | GCC | F | null | -287500759 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.8056508189855021 | EGYAKQZXEGXNLLREPZFWVCTQTH | + 89 46066 | GGCAG | AAA | C | null | -493586842 | true | AHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGT | null | 0.612124337258956 | UNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPI | + 90 46985 | TAG | CTTA | W | null | 351786237 | null | XUNGJITKBVEEPVVKXCSIXIBPDCIIEIJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVVK | null | 0.27826706664560996 | AMVZAAQHDHBHFFAYFMRFB | + 91 47081 | TACCC | AGAG | E | null | -36353828 | true | KKJO | null | 0.0291007292139015 | TKZUZKDQYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWS | + 92 47907 | ATTCA | TCC | A | null | 613424168 | false | FSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMP | null | 0.2190837769941144 | YSMVTAGLUX | + 93 48226 | TAGC | GTATTATCGC | Q | null | 1202745151 | false | HMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZVCSKRHFAOHYQERO | null | 0.3656546516594086 | HTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAADWL | + 94 48416 | GA | ATTC | B | null | -1923088956 | false | NYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | null | 0.8751078883243962 | YOQUBORWBWITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYREHOBNQZAXRCSAFUCKBVTXSFZIRE | + 95 49291 | TCCT | GGG | B | null | null | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | + 96 49771 | TGGT | CAC | P | null | -1705231585 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | 0.03359993949940343 | null | + 97 50142 | TTCTA | GAAA | R | null | 789177677 | true | null | null | 0.42057612519588505 | NLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZAUQLGKFGNIUNTJWMMJQHSKQBSLLSGOWIMIRRBIEZVEAOMGJ | + 98 50305 | GGA | AAGG | G | null | -1078219233 | null | LOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIBFJARVKVELGNMJBSLVSOJJPATNF | null | 0.7680804977882877 | null | + 99 50789 | CTCC | TGATA | N | null | -1627198920 | false | JAJASVDEOFQ | null | 0.5578843763975981 | GYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEH | + +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesDataFrameMixed +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnString +DataFrameColumnString.resize(76): Converting column 'Test' to EnumArray. Found 6 enums found. Size before: 44 B, after: 5 B +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.481 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnString +[INFO] Running org.snpsift.tests.unit.TestCasesPrivate +TestCasesPrivate.test_01(48): Test +TestCasesPrivate.test_02(59): Test +TestCasesPrivate.test_03(70): Test +TestCasesPrivate.test_04(81): Test +TestCasesPrivate.test_05(89): Test +TestCasesPrivate.test_06(95): Test +TestCasesPrivate.test_07(101): Test +TestCasesPrivate.test_08(107): Test +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.snpsift.tests.unit.TestCasesPrivate +[INFO] Running org.snpsift.tests.unit.TestCasesIndex +TestCasesIndex.test_01(32): Test +TestCasesIndex.test_02(84): Test +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.293 s - in org.snpsift.tests.unit.TestCasesIndex +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMnp +DataFrame: MNP, size: 100, current index: 100, memory: 63.4 KB + Field types: + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + ##INFO= + 0 130 | GACTC | ATGCT | G | null | -346484495 | false | QZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPL | null | 0.43979982659080874 | VGLPKFFVDPCDVBXJS | + 1 800 | CCA | GAT | S | null | 734084664 | false | YGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQTLZADZBNDXVF | null | 0.6279332754134727 | XNTLWTQRTLGZHNXJGLETAEGILYUTDVAIF | + 2 1259 | TC | GT | S | null | null | false | SRXCKKTJLEUVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTD | null | 0.8556303199441717 | IFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBF | + 3 1947 | AGAAA | GCGTC | F | null | -135854320 | true | HAYYLXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBKSLLDJGZKGHDVQLAAKWGAU | null | null | | + 4 2673 | TC | CG | F | null | -288299077 | true | null | null | 0.7278040889330866 | TPRSHRUNJEPJIC | + 5 3562 | AGGTTA | GATAGC | U | null | 162252886 | true | BUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJ | null | 0.028750514440683772 | AMKDDPVNZURFTUUMHFZGRNHENWGVSRDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHAR | + 6 4158 | CCTCCC | GAGAAT | B | null | -304213835 | false | MFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTU | null | 0.04102447110373153 | SHHXQXSIOOTQBYAMZRFKJCJOARSXBEQNWBEYBTRLLBJTOPXYAVBUFKFXCYZJXGYVIC | + 7 4279 | CC | GG | X | null | 256660382 | false | MONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEO | null | 0.19109407573087445 | ASEUGGPSBVAVQAISGEPOGDMTZP | + 8 4676 | TTCTA | GATCC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | + 9 5500 | AG | TC | O | null | -1679979548 | false | QKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSWCUNQIYBBUBAZLCDFWYENCGBPHX | null | 0.8750558587334625 | CDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJW | + 10 5518 | CAGCA | ACAAT | G | null | -886012130 | false | VHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNAEJFNLP | null | 0.9484603601700132 | MYKFYMDAGCGBDIDZEEHKQQHTZFSFVYKAZIZWLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZT | + 11 5728 | ACGC | GTCA | Y | null | -1245654784 | false | IAAHSWFGVIBKKGFWKBYZYNSNTPANSIGHYIAITLYHHFQBGATATIA | null | 0.7194449346355324 | IKEXJRDMJIBLOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZ | + 12 6459 | CCG | AGA | null | null | -129760917 | false | BYNFJGRC | null | 0.5882172034343477 | GIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYW | + 13 6889 | AGCGC | CCAAG | P | null | 1620772052 | true | null | null | 0.35351188686690904 | FUCMTYDAXAWLEPFSOPHVFZUEFDEJ | + 14 7834 | AA | CT | null | null | 335155552 | false | null | null | 0.4086730063619384 | null | + 15 8137 | CTAG | TCCT | D | null | 690281034 | true | HBLPLKJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQC | null | 0.4844370393511812 | UBSELUPRB | + 16 9084 | TT | AA | C | null | 917754666 | false | XDMDFINZHSRJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRABIWE | null | 0.6487816358956248 | SWJIIPEMJKSOVNOHLLTOINNESNDAMN | + 17 9409 | GCCT | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | + 18 10001 | TGCACA | ATAGTG | T | null | -1515629276 | null | null | null | null | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | + 19 10311 | GTGT | ACTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | + 20 11068 | GT | CG | N | null | 509578579 | null | UKFPBAFIBSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJS | null | 0.7785962769003004 | TPEZATDQXXMYLARYBPGPAPLS | + 21 11174 | TGCTCT | AAACTA | P | null | 921144451 | false | WOVCTBZXSFZEKHHLXZIXJKJIXDPIKBKIANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUU | null | 0.9123421937562539 | R | + 22 11571 | CTAG | TCCT | D | null | 1718949627 | false | MYOHSRXWUDPVRSRMKLUCGTCFRDYIDIJFX | null | 0.46673104389165376 | TYPTCCKIUXDNSLHWUDRUSZUWXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGV | + 23 12078 | CCCT | TTTC | O | null | -1384192067 | false | NJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCSMNEYJGTFPZIVULMYLCDHDSTUTUSRRDMJNIGBCJUBZXLDNNXPCVBJPSNJTEH | null | 0.26815358468775163 | XTCDDIXWJJSJYHEWHKXIGPLGGEVWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEO | + 24 12254 | TCAC | GGTT | null | null | -438374424 | true | null | null | 0.14673592424180915 | AHUDG | + 25 12349 | ATCAT | CGGTA | H | null | 758453846 | true | KLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPB | null | 0.2292387309942473 | YYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELV | + 26 13123 | CCC | GAT | X | null | -1001450513 | true | JSK | null | 0.2696122012937159 | BHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMVQSQTSRSIRDVTNMTRXPB | + 27 13770 | TGAT | GATG | null | null | 2005789910 | true | PWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQWJECWFMMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCV | null | null | XP | + 28 14344 | ACG | TAT | P | null | 1199993081 | true | FQNJQUXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHA | null | 0.5103393097757357 | GVHHLJEBZYNSDERCMAIXBNIQRIEMD | + 29 14756 | TGAC | CTTT | N | null | -1804611253 | false | LGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJUVINT | null | 0.7827166701418667 | CUDRTBUEEBJFHEBUIHMNHWIMEDVXAMQMWWROUPEHPKRI | + 30 15508 | GAAT | CGTG | H | null | 1220755583 | false | MBQAJLGCZOUMEVVTADJIMOLIX | null | 0.5501110077087921 | TOBMXBPTXHXONSYUZUFENSQQWZBPWGGGPCOYIRUODLHH | + 31 16240 | AGGAA | CACGG | U | null | 559197251 | true | HBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJ | null | 0.4097318407654317 | RFLVSUERWOAEHZWLSQJA | + 32 16358 | GGTA | CAGT | null | null | null | true | QBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOPVYHTILJJSHAQMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZ | null | 0.9780981106199931 | NXLQTNZOAMMXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUV | + 33 16976 | AAACAC | TCCGCT | M | null | -319681430 | false | DSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXBOMEYSHEELIYNVOKDHIXALLPUSAKUWJOTDSNJKSFBXNRJBTUVDIAXJ | null | 0.3831246943809442 | BFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHW | + 34 17435 | AACCCT | GGTTAA | R | null | -2051070316 | true | LDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJ | null | 0.8501062151834663 | XGCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXR | + 35 18205 | AATAT | CCACA | R | null | -1016853906 | false | RQQLRESQTQPMYWUYTHQCHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQM | null | 0.1252305846603955 | YAZDFJJHTKRYJFYFQLAKZUSSPYAPSWB | + 36 18671 | CTAA | ACCT | A | null | 312433305 | true | QXSZYHTFPESQNYFKQEPAPSQQOQTKLVFPHTXHKJQVYAMKHLOWPTSYXUYRRGGG | null | 0.7732929039471246 | | + 37 18815 | AGGT | TCCC | H | null | -192126094 | true | FDEFEAIUVTSP | null | 0.6687744242493339 | CZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQ | + 38 18990 | CCTCC | TTGAG | L | null | 1338557204 | false | KEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLRHFHNQMBPQZMVYTJOPTTGRQOOBAXHWOPEORODIVFVMHWOXPGIWSRG | null | null | ZTXKZAMMIUSGJPTSJDTKELPQHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOTNOWPKPFZRWZGJGDREVYFY | + 39 19649 | CCTTAT | TTAGGG | R | null | -845218447 | true | AVLQKIFL | null | 0.7741583228840283 | CGXHLBHRLBCINDKYLGDKTYCLAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERA | + 40 20607 | GCCAT | TGTCA | K | null | -45025817 | true | YHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCLAUMVGKGUNPFZAZQHYKIPFDMLTTAXEEGFQGXLBBH | null | 0.9691373737772555 | XUKJDPVJPSOBEOLCFOWQUAECVTRUGBQXLOOIN | + 41 21156 | GCCGCA | CGTATG | W | null | -1243561189 | true | SMRUPT | null | 0.4429926847541722 | SYPRLU | + 42 21806 | TA | AC | null | null | 1735497575 | false | null | null | 0.0394328659741473 | null | + 43 21839 | AG | TA | B | null | -865651518 | true | QFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXUL | null | 0.5871949292573951 | EPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTH | + 44 22489 | CGATCT | TCGGTC | P | null | 330394861 | false | FFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSF | null | 0.2997445310722515 | | + 45 23072 | GTTGGG | CCAAAA | Y | null | -502033321 | true | NUZCBT | null | 0.43276042129899417 | LQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNP | + 46 23295 | GGCCG | AAGAC | Z | null | -1518612753 | null | null | null | 0.6671145728647582 | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | + 47 23898 | TCAA | AGGG | O | null | 448265666 | false | GIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCK | null | 0.24165067951893648 | JURGROVHDGOLLVMWBULFCGKDFFUUTDDXURSPKSCNVRUE | + 48 24196 | AAGA | CCCT | G | null | 1626222045 | true | UDXOHXBODYUAKYGAHTLQELXYTJ | null | 0.32903298056413266 | IWXCNWIISITBTVMNPAYTHIPNCKCARBO | + 49 25181 | GTGG | CGTT | E | null | -1426293938 | true | IUOIHRTVRUYFUACKZH | null | null | GQTKNBBOPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHKAV | + 50 25974 | GA | TG | S | null | 1729122195 | null | AUPORVJZTOJMMUPECSVBKGRQSNGDQGTNSIEYGJHVFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYP | null | 0.20879455011120462 | RSBDIILLCGQGDPFJVTKNEZBOQHXUGGG | + 51 26128 | GGAC | CTGA | S | null | -2107939295 | true | GDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDD | null | 0.3465217480145627 | GISAKLNHGVIVMCRZGOEXFHZBLHXADISRKTIKXY | + 52 26948 | GTTC | CGCT | I | null | 874276164 | false | null | null | 0.8700358952315721 | LUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCI | + 53 27123 | GAGTTG | TTCGGA | C | null | -1626430403 | false | OOWLPEKVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPE | null | 0.4907299787684579 | ZPZQRZIACBFBDNF | + 54 27200 | TCCC | AGTG | null | null | 1628916152 | true | DAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPHVJBHDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRL | null | 0.20887152037949375 | IBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFERFVNVUBW | + 55 27870 | AT | CG | P | null | 918507005 | false | NSPEVNUIRNSROCBCLTAXWNYPFVQNKFDAHZSZPMHFL | null | 0.7860384613677455 | THEUQCNVKQSNISLICNKDKOMR | + 56 28608 | GTT | AGG | null | null | 1578678272 | true | PVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPBZSBYHGC | null | 0.6304197165537765 | MZPSCZTRZLGJQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAVQQYZ | + 57 29523 | GGTG | TTCT | F | null | null | false | GCXSKCEDPKOLOTGKOBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCD | null | 0.8901803045759502 | PETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZKKCJCLUBGMVFISLNJICNTQ | + 58 29759 | CTAC | TGCG | F | null | 1755390814 | true | EUPCXSMJBZ | null | 0.10399455024155924 | OECXQBGSKUSCEPQAOEVABQVGYCHU | + 59 30240 | GAGC | CGTA | J | null | 245805235 | false | WQCTHQNXHDVMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNI | null | 0.4726267810717161 | XQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOF | + 60 30670 | GTACTT | TAGGGA | S | null | 944514871 | true | CXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXH | null | 0.9717077606324023 | LDLEYBCIQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJB | + 61 30689 | GCGG | TATA | M | null | -2073219890 | true | CUBYQEBQREDVKQVRWCEFSWRGIDIFQAFZGNEUXCUGFHDUYGCNDAMPRDVDPCCTNNB | null | 0.9472471024440868 | null | + 62 30947 | GTC | AAA | I | null | -667972054 | true | JEAODATZBRRLBEQPWOKOXK | null | null | F | + 63 31496 | TACC | ACTT | null | null | -1153848742 | false | WXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKE | null | 0.3776459242637572 | BOQDFQOSGIMGDVIDDYSIARMFNRXIDQWTWJFLQPICWLAKPWYRVDDYVZKYHEGNPULBRVHWTPPXLDCEUJVNDMTNWIV | + 64 31944 | TCTA | GGCG | B | null | 486774086 | false | PXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZ | null | 0.3695467993106807 | QDSIHADOFZLPCQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUT | + 65 32434 | GGAAGG | ACCTCT | H | null | 1595589726 | false | IMHNAJEWWRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCK | null | 0.1196230872144961 | UODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLL | + 66 33205 | CG | GT | Q | null | -54864998 | false | MCMBEVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANB | null | null | HKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGB | + 67 33771 | TGCCGC | ACTGAA | J | null | -899793151 | false | XHGUEQLVFIECDHCJEXBPZTNNUGGNQRCFGCLCZLYWEJMYHNTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKL | null | 0.1905641263105804 | ZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCB | + 68 34741 | TGATT | CAGAG | F | null | -1225579561 | true | CCUOEWSCGDK | null | 0.881650195389698 | YDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVT | + 69 35499 | CT | AG | K | null | -276395645 | false | null | null | 0.977751537018833 | ZPEPQWRMMWVETGLEKPBV | + 70 35546 | AT | CG | null | null | 2040100435 | true | ZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPN | null | 0.09037104358084358 | BSUHN | + 71 36433 | GGCT | ATGC | C | null | 168413364 | true | null | null | 0.1904413360563667 | JHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFH | + 72 37416 | CG | TC | M | null | 1814030146 | true | DIISR | null | 0.27648269722880425 | JWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHH | + 73 38285 | AGC | TTA | D | null | -804208911 | null | OKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEP | null | 0.9198539785480527 | null | + 74 38361 | GCTGAC | AAACCT | G | null | null | false | SVPYLUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZ | null | 0.9186628435199452 | FHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCH | + 75 38632 | CCTAGC | TAGGTT | J | null | -1928769563 | false | ZC | null | 0.12015177706912317 | PRCYFYRJ | + 76 39006 | TCG | ATC | S | null | -1435537229 | true | VSZPXVTNOEXWQQVTGTYHRY | null | 0.10825272757712423 | AEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTIDOMJAM | + 77 39326 | CTGG | GCCC | N | null | 1238244676 | false | RPGGYYEALD | null | 0.41559312842378404 | YXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZ | + 78 39616 | AT | GC | P | null | 193791099 | false | YTCT | null | 0.2178404304349859 | PFDYCFBWFIJOYSGWEIOFGIU | + 79 40139 | TGTAGT | CAGGTA | F | null | 928401180 | true | null | null | 0.4941678716122485 | GHUMR | + 80 40682 | AC | GA | null | null | -510409048 | false | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | 0.6826290896912366 | GZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | + 81 40844 | GTTTC | CGCCG | M | null | 838024760 | true | UVO | null | 0.5626054761915171 | FDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVXJVCQCBJL | + 82 41772 | TT | CG | null | null | -1963423867 | false | ZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCM | null | 0.06821448380998862 | null | + 83 42405 | GGAGAT | CCGAGA | null | null | 599980869 | true | SVREX | null | 0.557000574778266 | BCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAV | + 84 42798 | AAAT | CCTC | W | null | -433896788 | true | NNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURG | null | 0.8086382761333594 | null | + 85 43166 | TCCTT | GTGCG | P | null | -212160676 | false | DASKPMDBASJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQ | null | 0.4004611468446073 | OL | + 86 43893 | TCAA | ATCG | A | null | -1842380129 | true | ALSCGAZOEWAOGVKFINKY | null | 0.6941442078114862 | null | + 87 44799 | CTATG | AATGA | C | null | 1518735330 | false | TEGAXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMU | null | 0.035089348611912374 | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | + 88 44980 | ACACG | GGGGT | A | null | -1094185683 | true | DFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYCFSVUZWZMVVVAMVZAAQHDHBHFF | null | 0.39624910302016625 | SOPTTCSZJSNBGPIFIBAHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIA | + 89 45514 | CTAGGG | GCTATT | C | null | 829369797 | true | FYBZVVKGXESMQRCAXYFQXIDFWSGDLLYEDQGNLLGTKZUZKDQYKPUXKE | null | 0.06802209908917545 | CIIEIJGPIYRYOKKJGWQFGMJFLHZAH | + 90 46164 | CTT | TGC | M | null | -814452473 | false | YGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELONOYSMVTAGLUXLTSFSUXWPAZ | null | 0.7938675906527775 | | + 91 46724 | TTATGC | GGTAAA | P | null | 1882730814 | true | PTPSDIRXOPHWHAEEWOYVMXSLFZPIOTQNACNSNCHTLNYRRGIOERSJAEXC | null | 0.37844740748624583 | XIXGKFSRYQHMBXLWGDWVB | + 92 46735 | GACGC | TCTTG | G | null | 575014296 | false | OMCUHBNTWZFLRLFXDZVCSKRHFAO | null | 0.5133194346909566 | XNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJU | + 93 47404 | GACG | TTGA | V | null | 681339300 | true | ITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYRE | null | null | PBMUTRLSEYOQUBOR | + 94 48271 | GAGCG | TTTAT | Z | null | 300539013 | true | null | null | 0.936695453283102 | YURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | + 95 48812 | CT | GG | B | null | -538906411 | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | + 96 49292 | TGGT | CACG | P | null | 2113525344 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | null | null | + 97 49663 | TTCTA | GGTAG | H | null | -1954124469 | false | GKFGNIUNTJWMMJQHSKQ | null | null | YNLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZA | + 98 49944 | TAAC | CGCA | G | null | -1858433447 | true | RVKVELGN | null | 0.8010342281968461 | IVYJCJCARHWGLTWGVOVBBSKLOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIB | + 99 50194 | CTT | TAC | Y | null | -944159107 | true | QYFRYGYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEHBWLJAJASVDEOFQVPOEGNJ | null | 0.06701482985829554 | YWMZAJHDQZT | + +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesDataFrameMnp +[INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnFloat +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.016 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnFloat +[INFO] Running org.snpsift.tests.unit.TestCasesAnnotateCreateIndex +TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test +TestCasesAnnotate.test_29_repeated_IDs(618): Test +TestCasesAnnotate.test_01(145): Test +TestCasesAnnotate.test_02(153): Test +TestCasesAnnotate.test_03(161): Test +TestCasesAnnotate.test_04(169): Test +TestCasesAnnotate.test_05(181): Test +TestCasesAnnotate.test_06(192): Test +TestCasesAnnotate.test_07(217): Test +TestCasesAnnotate.test_08(232): Test +TestCasesAnnotate.test_09(245): Test +TestCasesAnnotate.test_11(273): Test +TestCasesAnnotate.test_12(300): Test +TestCasesAnnotate.test_13(320): Test +TestCasesAnnotate.test_14(340): Test +TestCasesAnnotate.test_15(356): Test +TestCasesAnnotate.test_16(372): Test +TestCasesAnnotate.test_17(390): Test +TestCasesAnnotate.test_18(415): Test +TestCasesAnnotate.test_19(428): Test +TestCasesAnnotate.test_20(439): Test +TestCasesAnnotate.test_21(453): Test +TestCasesAnnotate.test_22(479): Test +TestCasesAnnotate.test_24(509): Test +TestCasesAnnotate.test_25(539): Test +TestCasesAnnotate.test_35(693): Test +TestCasesAnnotate.test_36(711): Test +TestCasesAnnotate.test_38(732): Test +TestCasesAnnotate.test_39(743): Test +TestCasesAnnotate.test_40(762): Test +TestCasesAnnotate.test_41(770): Test +TestCasesAnnotate.test_42(781): Test +TestCasesAnnotate.test_43(809): Test +TestCasesAnnotate.test_44(835): Test +TestCasesAnnotate.test_45(861): Test +TestCasesAnnotate.test_33_empty_db(665): Test +TestCasesAnnotate.test_26_repeat_db_entry(568): Test +TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test +TestCasesAnnotate.test_28_exists(596): Test +TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test +TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test +TestCasesAnnotate.test_27_repeat_db_entry(580): Test +[INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.436 s - in org.snpsift.tests.unit.TestCasesAnnotateCreateIndex +[INFO] Running org.snpsift.tests.unit.TestCasesVariantTypeCounter +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesVariantTypeCounter +[INFO] Running org.snpsift.tests.unit.TestCasesEnumArray +EnumArray: length: 17 / 17, number of enums: 6 + 0: 'one' (1) + 1: 'two' (2) + 2: 'three' (3) + 3: 'four' (4) + 4: 'five' (5) + 5: 'three' (3) + 6: 'four' (4) + 7: 'five' (5) + 8: 'three' (3) + 9: 'four' (4) + +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.525 s - in org.snpsift.tests.unit.TestCasesEnumArray +[INFO] Running org.snpsift.tests.unit.TestCasesDbNsfp +TestCasesDbNsfp.test_01(113): Test +TestCasesDbNsfp.test_02(138): Test +TestCasesDbNsfp.test_03(160): Test +TestCasesDbNsfp.test_04(179): Test +TestCasesDbNsfp.test_05(200): Test +TestCasesDbNsfp.test_06(223): Test +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.166 s - in org.snpsift.tests.unit.TestCasesDbNsfp +[INFO] Running org.snpsift.tests.unit.TestCasesVcfCheck +TestCasesVcfCheck.test_01(18): Test +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesVcfCheck +[INFO] Running org.snpsift.tests.unit.TestCasesVarType +TestCasesVarType.test_05_multiple(82): Test +TestCasesVarType.test_01_SNP(58): Test +TestCasesVarType.test_02_MNP(64): Test +TestCasesVarType.test_03_INS(70): Test +TestCasesVarType.test_04_DEL(76): Test +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesVarType +[INFO] Running org.snpsift.tests.unit.TestCasesBoolArray +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.417 s - in org.snpsift.tests.unit.TestCasesBoolArray +[INFO] Running org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache +TestCasesDbNsfp.test_01(113): Test +TestCasesDbNsfp.test_02(138): Test +TestCasesDbNsfp.test_03(160): Test +TestCasesDbNsfp.test_04(179): Test +TestCasesDbNsfp.test_05(200): Test +TestCasesDbNsfp.test_06(223): Test +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.868 s - in org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache +[INFO] Running org.snpsift.tests.unit.TestCasesExtractFields +TestCasesExtractFields.test_31_ann(291): Test +TestCasesExtractFields.test_00(71): Test +TestCasesExtractFields.test_01(98): Test +TestCasesExtractFields.test_02(104): Test +TestCasesExtractFields.test_03(110): Test +TestCasesExtractFields.test_04(116): Test +TestCasesExtractFields.test_05(122): Test +TestCasesExtractFields.test_06(128): Test +TestCasesExtractFields.test_07(134): Test +TestCasesExtractFields.test_08(140): Test +TestCasesExtractFields.test_09(146): Test +TestCasesExtractFields.test_10(152): Test +TestCasesExtractFields.test_11(158): Test +TestCasesExtractFields.test_12(164): Test +TestCasesExtractFields.test_13(170): Test +TestCasesExtractFields.test_14(176): Test +TestCasesExtractFields.test_15(182): Test +TestCasesExtractFields.test_16(188): Test +TestCasesExtractFields.test_17(194): Test +TestCasesExtractFields.test_18(200): Test +TestCasesExtractFields.test_19(206): Test +TestCasesExtractFields.test_20(212): Test +TestCasesExtractFields.test_23(218): Test +TestCasesExtractFields.test_24(224): Test +TestCasesExtractFields.test_25(230): Test +TestCasesExtractFields.test_26(236): Test +TestCasesExtractFields.test_27(242): Test +TestCasesExtractFields.test_28(253): Test +TestCasesExtractFields.test_29(262): Test +TestCasesExtractFields.test_30(273): Test +TestCasesExtractFields.test_31(282): Test +TestCasesExtractFields.test_32(300): Test +TestCasesExtractFields.test_33(312): Test +TestCasesExtractFields.test_34(323): Test +TestCasesExtractFields.test_35(340): Test +[INFO] Tests run: 35, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 s - in org.snpsift.tests.unit.TestCasesExtractFields +[INFO] Running org.snpsift.tests.unit.TestCasesSort +TestCasesSort.test_01(30): Test +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesSort +[INFO] Running org.snpsift.tests.unit.TestCasesHwe +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesHwe [INFO] [INFO] Results: [INFO] @@ -3849,8 +3885,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 03:02 min -[INFO] Finished at: 2026-03-22T18:22:15-12:00 +[INFO] Total time: 02:41 min +[INFO] Finished at: 2025-02-18T14:06:02+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -3874,8 +3910,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.581 s -[INFO] Finished at: 2026-03-22T18:22:17-12:00 +[INFO] Total time: 0.332 s +[INFO] Finished at: 2025-02-18T14:06:03+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibsnpsift-java --javadoc --base-directory=/build/reproducible-path/snpsift-5.2.e\+dfsg --non-explore Failed to parse /usr/share/maven-repo/org/biojava/biojava-structure/6.1.0/biojava-structure-6.1.0.pom @@ -3982,9 +4018,9 @@ dpkg-gencontrol: warning: package libsnpsift-java-doc: substitution variable ${maven:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'snpsift' in '../snpsift_5.2.e+dfsg-2_all.deb'. -dpkg-deb: building package 'libsnpsift-java-doc' in '../libsnpsift-java-doc_5.2.e+dfsg-2_all.deb'. dpkg-deb: building package 'libsnpsift-java' in '../libsnpsift-java_5.2.e+dfsg-2_all.deb'. +dpkg-deb: building package 'libsnpsift-java-doc' in '../libsnpsift-java-doc_5.2.e+dfsg-2_all.deb'. +dpkg-deb: building package 'snpsift' in '../snpsift_5.2.e+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../snpsift_5.2.e+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../snpsift_5.2.e+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3992,12 +4028,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2573606/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2371790 and its subdirectories -I: Current time: Sun Mar 22 18:23:02 -12 2026 -I: pbuilder-time-stamp: 1774246982 +I: removing directory /srv/workspace/pbuilder/2573606 and its subdirectories +I: Current time: Tue Feb 18 14:06:41 +14 2025 +I: pbuilder-time-stamp: 1739837201