Diff of the two buildlogs: -- --- b1/build.log 2025-08-20 19:21:52.755733792 +0000 +++ b2/build.log 2025-08-20 19:24:17.359920026 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 22 13:43:15 -12 2026 -I: pbuilder-time-stamp: 1790127795 +I: Current time: Thu Aug 21 09:21:54 +14 2025 +I: pbuilder-time-stamp: 1755717714 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying ignore_flaky_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/304618/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 20 19:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c5c13764aa0947179f816c7df2c1f915' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='304618' - PS1='# ' - PS2='> ' + INVOCATION_ID=945b893a780c453b85a341d639c51039 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=364740 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0jpc3XXw/pbuilderrc_g8ae --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0jpc3XXw/b1 --logfile b1/build.log barclay_6.0.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0jpc3XXw/pbuilderrc_ZO9P --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0jpc3XXw/b2 --logfile b2/build.log barclay_6.0.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/304618/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -376,7 +408,7 @@ Get: 241 http://deb.debian.org/debian unstable/main arm64 libjacoco-java all 0.8.12-1 [647 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libjoptsimple-java all 5.0.4-7 [73.7 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libmockito-java all 3.3.0-2 [510 kB] -Fetched 255 MB in 1s (182 MB/s) +Fetched 255 MB in 2s (137 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -1174,8 +1206,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Sep 23 01:43:47 UTC 2026. -Universal Time is now: Wed Sep 23 01:43:47 UTC 2026. +Local time is now: Wed Aug 20 19:22:54 UTC 2025. +Universal Time is now: Wed Aug 20 19:22:54 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1577,7 +1609,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/barclay-6.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barclay_6.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/barclay-6.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barclay_6.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 6.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1635,7 +1671,7 @@ make[1]: Leaving directory '/build/reproducible-path/barclay-6.0.0+dfsg' jh_linkjars -O--buildsystem=gradle Duplicate specification "u=s" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barclay-6.0.0+dfsg' @@ -1650,18 +1686,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.921 secs. -The client will now receive all logging from the daemon (pid: 321487). The daemon log file: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1/daemon-321487.out.log +An attempt to start the daemon took 2.478 secs. +The client will now receive all logging from the daemon (pid: 375635). The daemon log file: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1/daemon-375635.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3e8746a1 -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3e8746a1 -Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@26c07d92 +Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2e41ee1f +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2e41ee1f +Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a327958 Starting Build Compiling initialization script '/build/reproducible-path/barclay-6.0.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@504b17 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@55bf0362 Compiling initialization script '/build/reproducible-path/barclay-6.0.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/barclay-6.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-6.0.0+dfsg/settings.gradle) @@ -1680,15 +1716,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@5d4ce23e +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@19988c72 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@26c07d92 -Creating new cache for taskHistory, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@76dc67da -Creating new cache for outputFiles, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@48c20781 -:compileJava (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a327958 +Creating new cache for taskHistory, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@63006e89 +Creating new cache for outputFiles, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@553e5908 +:compileJava (Thread[#55,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.007 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@699bc4d8 +Putting task artifact state for task ':compileJava' into context took 0.015 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@315452a6 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian @@ -1700,7 +1736,7 @@ Replacing org.apache.logging.log4j:log4j-api:jar:2.17.1 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Passing through org.apache.logging.log4j:log4j-bom:jar:debian -Up-to-date check for task ':compileJava' took 0.745 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.53 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. @@ -1708,32 +1744,32 @@ .map(line -> WordUtils.wrap(line, width)) ^ 1 warning -:compileJava (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 5.975 secs. -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 6.507 secs. +:processResources (Thread[#55,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.024 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.021 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.134 secs. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.098 secs. +:classes (Thread[#55,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#64,Task worker for ':' Thread 10,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/barclay-6.0.0+dfsg/build/debian/barclay.pom -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.261 secs. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:debianMavenPom (Thread[#64,Task worker for ':' Thread 10,5,main]) completed. Took 0.168 secs. +:jar (Thread[#64,Task worker for ':' Thread 10,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.021 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.019 secs. It is not up-to-date because: No history is available. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.177 secs. +:jar (Thread[#64,Task worker for ':' Thread 10,5,main]) completed. Took 0.128 secs. -BUILD SUCCESSFUL in 12s +BUILD SUCCESSFUL in 19s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/reproducible-path/barclay-6.0.0+dfsg' jh_build -O--buildsystem=gradle @@ -1753,17 +1789,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.977 secs. -The client will now receive all logging from the daemon (pid: 326541). The daemon log file: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1/daemon-326541.out.log +An attempt to start the daemon took 1.826 secs. +The client will now receive all logging from the daemon (pid: 376203). The daemon log file: /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/daemon/4.4.1/daemon-376203.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@df59d02 -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@df59d02 -Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@511da7b5 +Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@512d2229 +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@512d2229 +Creating new cache for fileHashes, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@61755c0f Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f1989ad +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@b98be8c Settings evaluated using settings file '/build/reproducible-path/barclay-6.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-6.0.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-6.0.0+dfsg' @@ -1779,15 +1815,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@353d6d47 +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@28f89d01 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@511da7b5 -Creating new cache for taskHistory, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@25503ced -Creating new cache for outputFiles, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@b38d1df +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@61755c0f +Creating new cache for taskHistory, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@207f382f +Creating new cache for outputFiles, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1153b5ee :compileJava (Thread[#55,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.008 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@510d9c71 +Putting task artifact state for task ':compileJava' into context took 0.017 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-6.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@667f40a1 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian @@ -1799,21 +1835,21 @@ Replacing org.apache.logging.log4j:log4j-api:jar:2.17.1 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Passing through org.apache.logging.log4j:log4j-bom:jar:debian -Skipping task ':compileJava' as it is up-to-date (took 0.875 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.725 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.941 secs. -:processResources (Thread[#57,Task worker for ':' Thread 3,5,main]) started. +:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.803 secs. +:processResources (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.044 secs). +Skipping task ':processResources' as it is up-to-date (took 0.03 secs). :processResources UP-TO-DATE -:processResources (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.05 secs. -:classes (Thread[#57,Task worker for ':' Thread 3,5,main]) started. +:processResources (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 0.045 secs. +:classes (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:compileTestJava (Thread[#57,Task worker for ':' Thread 3,5,main]) started. +:classes (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 0.007 secs. +:compileTestJava (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Malformed class file [Pair.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. @@ -1878,64 +1914,64 @@ Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian -Up-to-date check for task ':compileTestJava' took 3.088 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 2.55 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 8.04 secs. -:processTestResources (Thread[#57,Task worker for ':' Thread 3,5,main]) started. +:compileTestJava (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 7.136 secs. +:processTestResources (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.066 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.062 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.15 secs. -:testClasses (Thread[#65,Task worker for ':' Thread 11,5,main]) started. +:processTestResources (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 0.181 secs. +:testClasses (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#65,Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. -:test (Thread[#65,Task worker for ':' Thread 11,5,main]) started. +:testClasses (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:test (Thread[#59,Task worker for ':' Thread 5,5,main]) started. :test -Putting task artifact state for task ':test' into context took 0.005 secs. +Putting task artifact state for task ':test' into context took 0.001 secs. Replacing org.apache.logging.log4j:log4j-core:jar:2.17.1 -> org.apache.logging.log4j:log4j-core:jar:debian -Up-to-date check for task ':test' took 1.071 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 1.12 secs. It is not up-to-date because: Task.upToDateWhen is false. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-6.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath14018129165742246526txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-6.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12720199045766170250txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@278b485e, [], /tmp/enabledExpansion875149090967547711.args, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@4493f5b1, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@28e7b668, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion9158792572044967490.args, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@79c3299c, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@2152d6a7, [], /tmp/enabledExpansion6182054504063103623.list, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@3370f0b3, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@20eb4a07, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion153722919725037103.list, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@50d97bd6, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@62d55789, [], /tmp/enabledExpansion1026148354453224992.args, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@d0ec3f7, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@493efb3e, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion13084880924568321208.args, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@51781c4e, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1a3f91a6, [], /tmp/enabledExpansion13301364599516308051.list, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@528524a9, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@10368f5d, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion5947948485427025351.list, [Ljava.lang.String;@418884e7, [Ljava.lang.String;@39683a36, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@10c46207, [], [Ljava.lang.String;@5bdfb351, [Ljava.lang.String;@750c363f, [Ljava.lang.String;@2a4ae69f, [Ljava.lang.String;@192d6d8b)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@33d7905d, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@5bdfb351, [Ljava.lang.String;@750c363f, [Ljava.lang.String;@56882f21, [Ljava.lang.String;@7aa49d7a)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1e7f30, [], /tmp/enabledExpansion9964686684178520613.args, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@6206cda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6eedc109, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion17942892031453396313.args, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@3c5d6161, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5782439f, [], /tmp/enabledExpansion5497129114601369813.list, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@6e18a4ff, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@409a9cbb, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion10497614239715121691.list, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@2d6fee32, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@194379d9, [], /tmp/enabledExpansion3219180623425962646.args, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@616949bb, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@50534da9, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion12100609296342633518.args, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@3a2e8e6c, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@62a7af08, [], /tmp/enabledExpansion10471617848054040236.list, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@6fdd7318, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@2781ea41, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion4407761716179197806.list, [Ljava.lang.String;@5d0f2f84, [Ljava.lang.String;@27e81ee8, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@39bd977e, [], [Ljava.lang.String;@3546c70d, [Ljava.lang.String;@48168090, [Ljava.lang.String;@1092c0f9, [Ljava.lang.String;@4541a3f2)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@247149db, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@3546c70d, [Ljava.lang.String;@48168090, [Ljava.lang.String;@24d6a696, [Ljava.lang.String;@4b08dde)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@58aa89ab, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@58aa89ab, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@7f9fd19c, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@7f9fd19c, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@1519ac43, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@1519ac43, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@507d99a9, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@6fc9bf5c, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@5814244c, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@5814244c, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@3a13b26, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@3a13b26, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@548852de, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@548852de, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@638b3ac0, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@49eaa3f3, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testPositionalCollectionFromExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@753add19, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@753add19, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@178026f1, [Ljava.lang.String;@19ba5bb8)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@7784d3f6, [Ljava.lang.String;@2dd2ae00)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@b60b48a, [Ljava.lang.String;@4dc5a143)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@6fbdabbf, [Ljava.lang.String;@1d89795d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@3492571, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@3492571, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@5666fdcd, [Ljava.lang.String;@4888e214)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3d6737dd, [Ljava.lang.String;@5a3e6ae3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@25028b30, [Ljava.lang.String;@1f2e4062)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@2a5b2440, [Ljava.lang.String;@72079685)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgCollectionNotInitialized(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@411c5564, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments-file,-arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@62ddee59, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@7bae6f24, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@55e31df, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments-file,-arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@540dd7fc, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3870ed2f, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -1954,11 +1990,11 @@ Running Test: Test method testEnumSet(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testEnumSetNegative(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@7de79b1, [Ljava.lang.String;@2beab848)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@200f3710, [Ljava.lang.String;@6d867653)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@3f35ad8c, [Ljava.lang.String;@78a74bd4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@217ab97d, [Ljava.lang.String;@2cba63b0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@6f2fdd44, [Ljava.lang.String;@3885e8e0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@6903fafe, [Ljava.lang.String;@613824e8)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@5f3a9ab6, [Ljava.lang.String;@16560ced)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@21ff7bd2, [Ljava.lang.String;@79c75826)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@10e54c1f, [Ljava.lang.String;@73fa8d32)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3ecba81b, [Ljava.lang.String;@2a655364)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2077,13 +2113,13 @@ Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOnlyPrintNameOnce(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@6df45e8f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@2b6d02cc)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@6c3bf771)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@668e2a32)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@3da80d50)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@7d05f628)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@616bf578)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@72eabafe)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@6dc5f9f4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@52a987ba)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@66e6e5b2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@61158e1a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@76f01b2c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@3a4784ad)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositionalDeprecated(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2091,9 +2127,9 @@ Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@556aa142)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@5cc91517)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@32e9ca98)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@229953f8)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@6440f7b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@36e83e3a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2104,19 +2140,19 @@ Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@3cc8abdf, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@45477188, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@2ce4499a, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@20f1f640, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@56d87ca7, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@36bc9815, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@1b6489e5, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@583e9a60, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@4a440508, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@3fc5fe91, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@a24df29, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@2cebb6ad, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@2ff2d9f, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@1fcf9990, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@13cba802, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@2e64f197, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@69bbfb49, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@3231e589, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@625bc5c4, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) -Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@64d2f069, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@6139a9cd, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@d584cd4, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDefaultIncludePluginClass[0](class org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest$TestPluginBase, true)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) @@ -2596,401 +2632,401 @@ Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@55296126, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@4648fcd8, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@5b3d42d6, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@6b7d838a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@41e62abb, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@2b85b7d4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y +Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@375957f9, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@375957f9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@71cb853f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N +Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@24811ba5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5c3ca1f4, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) @@ -4145,42 +4181,42 @@ Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@29e23ec, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@596a7fbe, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@387aca4c, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@2482efa0, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@18664f39, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@7a762afd, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@208b1fda, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@73dfd26c, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@7523668a, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@697493bd, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@7c31f7d1, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@7e608f55, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@240e9971, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@6eb25b0f, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@649954df, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@338640fe, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@3156e528, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@7f885c2d, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@5d3f05f7, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@5dcbb00a, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@15753237, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@ab67ccd, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@251ae23, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@5f922e91, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@20febaec, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@53a4fcbc, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@20e3376f, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@2cdbff0b, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@1e792ba3, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@40a79081, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@7169788e, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@658bda3, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@49fe415d, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@4882c839, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@4fcdf4a1, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@3c43cdba, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@16002a04, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@18ac9b2f, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@301e07f2, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@54134ea, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@76e538f7, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@4693c830, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@b3a3647, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@53d61199, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@61def6bd, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@6d003a41, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@23152b35, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@c17247f, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@56b5b6ff, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@5bc5f4fb, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@69d1b663, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@3d93d44f, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@ce39048, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@4a0ccaff, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@18d60332, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@2f759418, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@321db765, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@25300ec6, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@373aa039, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@f7dd69, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@16bf29bd, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@28801448, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@1f1ec0, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@2a4eaee8, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@2ca19665, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@57e27ce3, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@206e2071, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@495115ae, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@7cb071c9, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@333fe8f2, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@437de03, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@291b1c64, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) Running Test: Test method testSetArgumentValuesCollections[0](required, [], [stuff, more stuff], [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) Running Test: Test method testSetArgumentValuesCollections[1](optional, [], [stuff, more stuff], [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) Running Test: Test method testSetArgumentValuesCollections[2](defaultedRequired, [], [stuff, more stuff], [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) @@ -4213,95 +4249,95 @@ Running Test: Test method testSetArgumentValuesCollectionsFailures[1](defaultedRequired, [], [stuff, more stuff, null])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) Running Test: Test method testSetArgumentValuesCollectionsFailures[2](required, [APPEND_TO_COLLECTIONS], [stuff, more stuff, null])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) Running Test: Test method testSetArgumentValuesCollectionsFailures[3](defaultedRequired, [APPEND_TO_COLLECTIONS], [stuff, more stuff, null])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@20ddccd8, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@66c72220, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@5cc5c5a, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@57f83b67, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@6c7d6a43, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@3de5c986, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElementsGreaterThanMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testNonCollection(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) -Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@649c1205)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@7d5fd1a6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@66ccab67)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@1b9a4f13)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@47e16ded)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@7793faa)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@24ad89ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@347695ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@6c5b4c35)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@5b6e944c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@24e71c8d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@74960df8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@6411938e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@a87db2f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@6db8ba04)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@40c7d679)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@3978693)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@6086cc92)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@4f56f6b8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@62bce7bc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@3866f0e3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@4be3483c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@6db2ffcf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@4cecb99a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@33d7e8ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@7a247ff7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@36cd307f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@553b5154)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@39b2cdf4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@70949f35)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@2385c0c8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@50b4b3f9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@3a07f8ed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@7553fc17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@572e2e36)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@4389d295)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@3bb27ede)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@22f9e955)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@7ea6a905)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@e3ca9be)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@e46d6a3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@9b49468)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@20f498e2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@7c83e4a0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@40c9ae5e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@3dcf023b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@456ffc97)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@37683bd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@2b8da1da)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@11670ad7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@4641ce95)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@5ef8cf6b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@56b58ea4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@3bac3158)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@3d14d33)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@70ad5db0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@4c53410a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@34a01e23)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@7a5b0f43)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@2ac4912c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@72d2b4d7, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@68553b51, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@47cc47aa, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@607813e7, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@62f367d3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@55d9946b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@220c2a0b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@68cbee55)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@2413faa0, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c226702, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@58401134)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@74a080d8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@31e10300, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1f30cc57)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@385a0658, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@55e12314, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6245d870)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@3255bdba, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7e64acb1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6bbcc6a0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@290b05ae, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4fe8bf9f, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6f75084e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@3881dbb4, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@18534c52, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4c3863fb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@1acf71f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7143131b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@18080c80)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@25f75bc, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7fd92988, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ed4171f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@6afd7f8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@314b68d6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@abfbe9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@17b87d6c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@231867ad, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4fe03da)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@718a8237, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@324e64bc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7c662945)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@31e32012, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@74d9b429, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5e9658)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@24a5c489, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4d80e476, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7aca29d3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@3b403e03, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77002092, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@52d66bdd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@57d33d40, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4bd168f0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3fd874dd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@61fb362e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5a87474, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@42ac2eee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@1f3b21ba)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@4045506d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@4983c4df)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@6efcc796)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@45f4f515)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@17d408e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@54b8207a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@199df39c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@b8db6a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@191e6086)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@31030e50)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@22a6003a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@4cfce2b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@1f6e09bc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@714361d8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@48fd8229)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@76045f96)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@7fb425dc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@2a39fa02)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@4f788423)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@7ba53772)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@7f42901)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@2fc462c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@1f922ef5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@28774d64)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@5a4f1a7d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@55fdde21)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@c257e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@612cbe1a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@3095627e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@352a3997)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@286433c9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@3656aff2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@2547ce91)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@38b1b3cd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@501d751)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@223db91f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@59f1b214)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@313f0c10)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@6ebb61c7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@531a8e7f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@48b99128)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@4a0fc2e9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@53098c14)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@77a2e5d2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@149a3bfb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@5bc3c8ce)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@6a569a6c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@2698096b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@22804e8a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@2784805a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@9599fb0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@60446ed1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@67ea886a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@31dda0d2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@4f5392ac)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@2f15109a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@33ffeadb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@488ac69)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@a25db2a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@7f784fb0, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@551c1f7c, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@7258a910, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@30170dd2, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3337bd5c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@5a486d4a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4189044b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@119ee9c3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@16e5a9e3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3909fec9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3b6a205e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@2f241021, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7d80ec94, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5091c6c5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@413d59c3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2299249c, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7c5bf349)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@23167529, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ba8dcc0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@d11bcf5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@7d44533a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6eacbe72, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3453b5f9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@291095e7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@249e2e09, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@607cf528)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@420e4f66, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2c0a295e, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@248edca0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@43dcc4f4, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@51a5adf4, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f528fe4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@692fc6f4, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@38773143, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@73cbee27)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@70459351, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2cf0e30, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b423c61)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@7150d8e1, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@59bed541, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4a64e8c2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@6f5286e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6795043b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11f9a7bc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@2ff3634a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@72d1db6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@20da212)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@7989973f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@71b074, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1dafac9c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@34f3232d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@613382ea, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@32824073)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@64b316c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@67cdfa1d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5ba1e61d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTaggedExpansionFile(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) @@ -4360,6 +4396,7 @@ , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[10](null, null, 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[11](hello, hello, 0)(org.broadinstitute.barclay.utils.UtilsUnitTest) +Gradle Test Executor 1 finished executing tests. Running Test: Test method testWrapParagraph[12](hello, hello, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[13](a b c d e f g, a b @@ -4389,16 +4426,15 @@ e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) -Gradle Test Executor 1 finished executing tests. Results: SUCCESS (369 tests, 369 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.043 secs) into: /build/reproducible-path/barclay-6.0.0+dfsg/build/test-results/test +Finished generating test XML results (0.034 secs) into: /build/reproducible-path/barclay-6.0.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.07 secs) into: /build/reproducible-path/barclay-6.0.0+dfsg/build/reports/tests/test -:test (Thread[#65,Task worker for ':' Thread 11,5,main]) completed. Took 7.351 secs. +Finished generating test html results (0.053 secs) into: /build/reproducible-path/barclay-6.0.0+dfsg/build/reports/tests/test +:test (Thread[#59,Task worker for ':' Thread 5,5,main]) completed. Took 6.94 secs. -BUILD SUCCESSFUL in 30s +BUILD SUCCESSFUL in 26s 5 actionable tasks: 3 executed, 2 up-to-date - rm -fr -- /tmp/dh-xdg-rundir-q0slWzgE + rm -fr -- /tmp/dh-xdg-rundir-lUxNLLeZ make[1]: Leaving directory '/build/reproducible-path/barclay-6.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4408,7 +4444,7 @@ dh_auto_install --destdir=debian/libbarclay-java/ -O--buildsystem=gradle install -m0755 -d /build/reproducible-path/barclay-6.0.0\+dfsg/debian/libbarclay-java jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libbarclay-java/usr/share/doc/libbarclay-java @@ -4427,12 +4463,12 @@ jh_classpath -O--buildsystem=gradle jh_manifest -plibbarclay-java "--classpath=/usr/share/java/commons-lang3.jar /usr/share/java/freemarker.jar /usr/share/java/gson.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar" debian/libbarclay-java/usr/share/java/barclay.jar Duplicate specification "version|V" for option "V" -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" Updating symlinked /build/reproducible-path/barclay-6.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-6.0.0.jar (via debian/libbarclay-java/usr/share/java/barclay.jar) Reading manifest from /build/reproducible-path/barclay-6.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-6.0.0.jar Updating manifest in /build/reproducible-path/barclay-6.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-6.0.0.jar jh_manifest -O--buildsystem=gradle -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" Duplicate specification "version|V" for option "V" find debian/libbarclay-java -name '*.jar' Found usr/share/java/barclay-6.0.0.jar @@ -4523,12 +4559,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/364740/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/304618 and its subdirectories -I: Current time: Tue Sep 22 13:44:51 -12 2026 -I: pbuilder-time-stamp: 1790127891 +I: removing directory /srv/workspace/pbuilder/364740 and its subdirectories +I: Current time: Thu Aug 21 09:24:16 +14 2025 +I: pbuilder-time-stamp: 1755717856