Diff of the two buildlogs: -- --- b1/build.log 2025-01-31 10:54:25.068303905 +0000 +++ b2/build.log 2025-01-31 10:57:58.658686329 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jan 30 22:50:50 -12 2025 -I: pbuilder-time-stamp: 1738320650 +I: Current time: Fri Mar 6 07:17:27 +14 2026 +I: pbuilder-time-stamp: 1772731047 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying privacy I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1835009/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 5 17:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='64407c2f815c46e88d4a83a6f4cde6d4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1835009' - PS1='# ' - PS2='> ' + INVOCATION_ID=bdcb52f035564e43b3c4c9e970bb5aa2 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1975032 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UNz653g2/pbuilderrc_6jcp --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UNz653g2/b1 --logfile b1/build.log cwltool_3.1.20250110105449-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UNz653g2/pbuilderrc_VLKx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UNz653g2/b2 --logfile b2/build.log cwltool_3.1.20250110105449-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1835009/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -439,7 +471,7 @@ Get: 251 http://deb.debian.org/debian unstable/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 python3-sphinxcontrib.autoprogram all 0.1.9-1 [10.6 kB] Get: 253 http://deb.debian.org/debian unstable/main arm64 python3-spython all 0.3.13-2 [55.2 kB] -Fetched 120 MB in 1s (173 MB/s) +Fetched 120 MB in 0s (252 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -1260,8 +1292,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Jan 31 10:51:27 UTC 2025. -Universal Time is now: Fri Jan 31 10:51:27 UTC 2025. +Local time is now: Thu Mar 5 17:18:05 UTC 2026. +Universal Time is now: Thu Mar 5 17:18:05 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1495,7 +1527,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/cwltool-3.1.20250110105449/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cwltool_3.1.20250110105449-3_source.changes +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cwltool-3.1.20250110105449/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwltool_3.1.20250110105449-3_source.changes dpkg-buildpackage: info: source package cwltool dpkg-buildpackage: info: source version 3.1.20250110105449-3 dpkg-buildpackage: info: source distribution unstable @@ -3573,7 +3609,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20250110105449.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20250110105449.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/.tmp-h8n0glj8/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/.tmp-c15z86x8/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -5751,7 +5787,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20250110105449.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20250110105449.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/.tmp-scs4oi2o/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/.tmp-69jpusng/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -6710,8 +6746,8 @@ make[1]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449' PYTHONPATH=/build/reproducible-path/cwltool-3.1.20250110105449/cwltool /usr/bin/make docs make[2]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449' -/bin/sh: 1: git: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found +/bin/sh: line 1: git: command not found cd docs && /usr/bin/make html make[3]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449/docs' Running Sphinx v8.1.3 @@ -7035,44 +7071,44 @@ created: 12/12 workers 12 workers [671 items] -s...ssssssssss...........sssssssssss.................................... [ 10%] -...........................ssssssssssss................................. [ 21%] -........................ss..sss......................................... [ 32%] -..............................sssssssssssss...............sss........... [ 42%] -........s........sssssssssssssssssss.............ssss..................s [ 53%] -......s.........ss...............ssssss.s....sssssssss....sss.....ssssss [ 64%] -ssssssss..........................s.ss.ssssssss................ss..s.... [ 75%] -...s....s..s...ss..s.......sss.........................sssssss......ssss [ 85%] -s..sssss.ss.s................ss.ssssss..........................ss...... [ 96%] -.............s....s...s [100%] +.s..s.............................................ss.................... [ 10%] +............................ssssss......ssssssssssssssssssssssss........ [ 21%] +........................ss.......ss.s...........................ssssssss [ 32%] +sssss......................................................sssssssssssss [ 42%] +ssssss......sss..........................ssss...........s.........s..... [ 53%] +...........ss..s....ssss.ss..sssssssss.......s.......ssssssssssssss..... [ 64%] +................sss......ss........ss........sssssss.ss..s.......ss...s. [ 75%] +..........s..s...s.s.ssssssssssssss........sss...............sssssss..s. [ 85%] +.................sssss....................ssss.......................... [ 96%] +...................s... [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(retries=3) -.pybuild/cpython3_3.12/build/cwltool/tests/test_ext.py: 10 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py: 136 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_ext.py: 10 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_mpi.py: 14 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_subgraph.py: 26 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_fetch.py: 2 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_conditionals.py: 2 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_procgenerator.py: 6 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_loop.py: 48 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_fetch.py: 2 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_rdfprint.py: 2 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_conditionals.py: 2 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_loop.py: 48 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_toolargparse.py: 6 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_input_deps.py: 8 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_load_contents.py: 2 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_trs.py: 4 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_input_deps.py: 8 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_loop_ext.py: 56 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_cwl_version.py: 4 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_trs.py: 4 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_user_agent.py: 2 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_target.py: 6 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_cwl_version.py: 4 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_validate.py: 12 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_docker.py: 2 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_relocate.py: 4 warnings -.pybuild/cpython3_3.12/build/cwltool/tests/test_tmpdir.py: 4 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_empty_input.py: 2 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_environment.py: 6 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_validate.py: 12 warnings +.pybuild/cpython3_3.12/build/cwltool/tests/test_tmpdir.py: 4 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_iwdr.py: 6 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_misc_cli.py: 14 warnings .pybuild/cpython3_3.12/build/cwltool/tests/test_schemadef.py: 2 warnings @@ -7101,10 +7137,10 @@ =========================== short test summary info ============================ SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path. @@ -7115,35 +7151,32 @@ SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. SKIPPED [9] cwltool/tests/test_override.py:76: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_override.py:119: Requires the docker executable on the system path. -SKIPPED [11] cwltool/tests/test_toolargparse.py:207: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. SKIPPED [2] cwltool/tests/test_pack.py:187: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:11: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_path_checks.py:42: Requires the docker executable on the system path. SKIPPED [7] cwltool/tests/test_path_checks.py:64: Requires the docker executable on the system path. SKIPPED [7] cwltool/tests/test_path_checks.py:88: Requires the docker executable on the system path. +SKIPPED [11] cwltool/tests/test_toolargparse.py:207: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:85: Requires the docker executable on the system path. @@ -7158,18 +7191,26 @@ SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_misc_cli.py:49: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:44: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:56: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:67: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:73: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:103: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:139: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:152: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:183: Requires the docker executable on the system path. @@ -7177,26 +7218,21 @@ SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:20: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:45: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:44: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:56: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:67: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:73: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:103: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:84: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:99: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:115: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:139: Requires that version 3.x of singularity executable version is on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. -=============== 499 passed, 172 skipped, 422 warnings in 24.17s ================ +=============== 499 passed, 172 skipped, 422 warnings in 16.64s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/tmp/ /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/main.cwl /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/output.txt* I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n 12 --ignore cwltool/schemas/ -rs --pyargs cwltool ============================= test session starts ============================== @@ -7207,44 +7243,44 @@ created: 12/12 workers 12 workers [671 items] -......s....ss.sssss..s........sss...............ssssssss................ [ 10%] -.....ssssssss.............ssss..................ss...................... [ 21%] -........................ss...ss.s....................................... [ 32%] -.....ssssssssss.sss....................................................s [ 42%] -ss.sssssssssssssssssss.......................ssss...........s.s......... [ 53%] -..........sssssssss....ss.........s.............ssssss....s............. [ 64%] -ssssssssssssss............sss.........ss.s...............ss..s.....sssss [ 75%] -sss..ss...s....s..s..s......sss.........ssss...sssss.ssssssssss......... [ 85%] -....................ssss.ssssss..........sss.s.......................... [ 96%] -....................... [100%] +.ss....sss..sssssssss.....sssss.ssss.................................... [ 10%] +..................sssss.................ssssss.......................... [ 21%] +........................ss..sss..............................ssssssss.ss [ 32%] +sss..................................................................... [ 42%] +.sss.....sssssssssssssssssss...........ssss...............s...s......... [ 53%] +......ssssss......s......ss..ssssssssssss....s.sssssssss............ss.. [ 64%] +ss............ss.......sss.........s......s...............ssssssss..sss. [ 75%] +.s............s.s....sss...........................sssssssssssssss.ssss. [ 85%] +......................................ssss........ss.s........ss...ss... [ 96%] +..s......s............s [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(retries=3) -.pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py: 136 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_ext.py: 10 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py: 136 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_mpi.py: 14 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_subgraph.py: 26 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_fetch.py: 2 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_procgenerator.py: 6 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_subgraph.py: 26 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_conditionals.py: 2 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_procgenerator.py: 6 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_rdfprint.py: 2 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_input_deps.py: 8 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_loop.py: 48 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_load_contents.py: 2 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_toolargparse.py: 6 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_input_deps.py: 8 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_loop_ext.py: 56 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_trs.py: 4 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_cwl_version.py: 4 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_docker.py: 2 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_trs.py: 4 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_loop_ext.py: 56 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_empty_input.py: 2 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_user_agent.py: 2 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_target.py: 6 warnings +.pybuild/cpython3_3.13/build/cwltool/tests/test_environment.py: 6 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_validate.py: 12 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_docker.py: 2 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_relocate.py: 4 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_empty_input.py: 2 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_tmpdir.py: 4 warnings -.pybuild/cpython3_3.13/build/cwltool/tests/test_environment.py: 6 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_iwdr.py: 6 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_misc_cli.py: 14 warnings .pybuild/cpython3_3.13/build/cwltool/tests/test_singularity.py: 2 warnings @@ -7266,18 +7302,17 @@ conj_graph = ConjunctiveGraph(store=graph.store) .pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[] -.pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[--parallel --debug] /usr/lib/python3/dist-packages/cwl_utils/sandboxjs.py:476: FutureWarning: Possible nested set at position 2 re.findall(r"^[[](?:log|err)[]].*$", stderr, flags=re.MULTILINE) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ -SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the singularity executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path. @@ -7299,14 +7334,8 @@ SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed @@ -7328,25 +7357,27 @@ SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_misc_cli.py:49: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_misc_cli.py:49: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:84: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:99: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:115: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:139: Requires that version 3.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. @@ -7362,14 +7393,18 @@ SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:84: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:99: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:115: Requires that version 2.6.x of singularity executable version is on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:139: Requires that version 3.x of singularity executable version is on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:20: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:45: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. -=============== 499 passed, 172 skipped, 423 warnings in 22.78s ================ +SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. +=============== 499 passed, 172 skipped, 422 warnings in 23.53s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/tmp/ /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/main.cwl /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/output.txt* create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -7651,8 +7686,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'cwltool-doc' in '../cwltool-doc_3.1.20250110105449-3_all.deb'. dpkg-deb: building package 'cwltool' in '../cwltool_3.1.20250110105449-3_all.deb'. +dpkg-deb: building package 'cwltool-doc' in '../cwltool-doc_3.1.20250110105449-3_all.deb'. dpkg-genbuildinfo --build=binary -O../cwltool_3.1.20250110105449-3_arm64.buildinfo dpkg-genchanges --build=binary -O../cwltool_3.1.20250110105449-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -7661,12 +7696,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1975032/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1835009 and its subdirectories -I: Current time: Thu Jan 30 22:54:24 -12 2025 -I: pbuilder-time-stamp: 1738320864 +I: removing directory /srv/workspace/pbuilder/1975032 and its subdirectories +I: Current time: Fri Mar 6 07:20:57 +14 2026 +I: pbuilder-time-stamp: 1772731257