Diff of the two buildlogs: -- --- b1/build.log 2025-11-04 23:15:10.719446796 +0000 +++ b2/build.log 2025-11-04 23:18:32.039681381 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 4 11:13:32 -12 2025 -I: pbuilder-time-stamp: 1762298012 +I: Current time: Tue Dec 8 19:38:12 +14 2026 +I: pbuilder-time-stamp: 1796708292 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying i386.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2316914/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 8 05:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='480ae44883424b19b759cd489c1ad460' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2316914' - PS1='# ' - PS2='> ' + INVOCATION_ID=edf528c7391946709b7e95ab07fe5ddc + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3421085 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DtFFAIiJ/pbuilderrc_stDb --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DtFFAIiJ/b1 --logfile b1/build.log cyvcf2_0.31.4-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DtFFAIiJ/pbuilderrc_SqSf --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DtFFAIiJ/b2 --logfile b2/build.log cyvcf2_0.31.4-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2316914/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -281,7 +313,7 @@ Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.4.2-1 [266 kB] -Fetched 56.1 MB in 0s (177 MB/s) +Fetched 56.1 MB in 0s (116 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -751,8 +783,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Nov 4 23:13:54 UTC 2025. -Universal Time is now: Tue Nov 4 23:13:54 UTC 2025. +Local time is now: Tue Dec 8 05:38:53 UTC 2026. +Universal Time is now: Tue Dec 8 05:38:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -892,7 +924,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/cyvcf2-0.31.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.31.4-1_source.changes +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cyvcf2-0.31.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.31.4-1_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.4-1 dpkg-buildpackage: info: source distribution unstable @@ -1006,34 +1042,6 @@ /usr/lib/aarch64-linux-gnu/libhts.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.4' -echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" -cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually -for tdir in .pybuild/cpython3_* ; do \ - cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ -done -dh_auto_test - pybuild --test --test-pytest -i python{version} -p 3.13 -I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest -============================= test session starts ============================== -platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -rootdir: /build/reproducible-path/cyvcf2-0.31.4 -configfile: setup.cfg -plugins: typeguard-4.4.4 -collected 113 items - -cyvcf2/tests/test_cli.py . [ 0%] -cyvcf2/tests/test_hemi.py . [ 1%] -cyvcf2/tests/test_reader.py ............................................ [ 40%] -........................................................ [ 90%] -cyvcf2/tests/test_writer.py ........... [100%] - -============================= 113 passed in 1.06s ============================== - rm -fr -- /tmp/dh-xdg-rundir-cydCmdRm -# clean up after testing -find . -name out.vcf -delete -make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1095,58 +1103,6 @@ creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 @@ -1156,11 +1112,6 @@ copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc @@ -1169,7 +1120,6 @@ Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/bin - rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.4' dh_numpy3 @@ -1218,20 +1168,11 @@ D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-click', 'python3 (<< 3.14)', 'python3 (>= 3.13~)', 'python3-numpy', 'python3-coloredlogs', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-click', 'python3-numpy', 'python3 (>= 3.13~)', 'python3-coloredlogs', 'python3 (<< 3.14)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild - Using 1762205228 as canonical time - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test_gt_bases.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/o.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/seg.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/bug.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/multi-contig.vcf.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 @@ -1293,8 +1234,8 @@ dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. -dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.4-1_arm64.deb'. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.4-1_arm64.deb'. +dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1303,12 +1244,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3421085/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2316914 and its subdirectories -I: Current time: Tue Nov 4 11:15:09 -12 2025 -I: pbuilder-time-stamp: 1762298109 +I: removing directory /srv/workspace/pbuilder/3421085 and its subdirectories +I: Current time: Tue Dec 8 19:41:31 +14 2026 +I: pbuilder-time-stamp: 1796708491