Diff of the two buildlogs: -- --- b1/build.log 2025-03-09 17:19:10.000576525 +0000 +++ b2/build.log 2025-03-09 17:33:58.164521431 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 11 11:38:10 -12 2026 -I: pbuilder-time-stamp: 1775950690 +I: Current time: Mon Mar 10 07:19:14 +14 2025 +I: pbuilder-time-stamp: 1741540754 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1494810/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 9 17:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='e0401557112a45a781dd23763fea5d06' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1494810' - PS1='# ' - PS2='> ' + INVOCATION_ID=e98169ce5a9e48f9b8dfdafaee767f08 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2558194 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oIv8Owjl/pbuilderrc_8YOC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oIv8Owjl/b1 --logfile b1/build.log diamond-aligner_2.1.11-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oIv8Owjl/pbuilderrc_BvO0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oIv8Owjl/b2 --logfile b2/build.log diamond-aligner_2.1.11-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1494810/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 38.8 MB in 0s (192 MB/s) +Fetched 38.8 MB in 0s (134 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -432,7 +464,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable @@ -491,7 +527,7 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (3.5s) +-- Configuring done (5.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -515,51 +551,51 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend -make -f CMakeFiles/arch_neon.dir/build.make CMakeFiles/arch_neon.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' +make -f CMakeFiles/arch_neon.dir/build.make CMakeFiles/arch_neon.dir/depend cd /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/banded_3frame_swipe.cpp make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' -[ 1%] Building CXX object CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -[ 2%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o -[ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o 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CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp +[ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp +[ 9%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp [ 10%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, @@ -623,16 +659,16 @@ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -649,9 +685,9 @@ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' -[ 10%] Built target arch_neon -make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' [ 10%] Built target arch_generic +make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' +[ 10%] Built target arch_neon make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" @@ -659,27 +695,27 @@ make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' [ 11%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o -[ 13%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o -[ 13%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -[ 14%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -[ 14%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o -[ 14%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o -[ 15%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -[ 15%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o -[ 15%] Building CXX object CMakeFiles/diamond.dir/src/basic/basic.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -MF 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CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -c 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CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_random.cpp -[ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] @@ -888,19 +923,18 @@ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ +[ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alignment_evaluer.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp.cpp [ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_data.cpp -cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics -[ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_regression.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ +cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ @@ -916,6 +950,8 @@ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ +[ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_regression.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_sim.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o @@ -1018,8 +1054,8 @@ [ 90%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/blast_stat.cpp [ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o -[ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/blastn_score.cpp +[ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/ncbi_std.cpp [ 92%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/util/tsv/table.cpp @@ -1057,484 +1093,484 @@ make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' -cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls -+ mktemp -d -+ TESTDIR=/tmp/tmp.mGUN0NAmih -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.mGUN0NAmih/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive +cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls +++ mktemp -d ++ TESTDIR=/tmp/tmp.xxQJIWAcNF ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.xxQJIWAcNF/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.034s] Algorithm: Double-indexed -Building query histograms... [0.027s] +Building query histograms... [0.047s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] +Masking reference... [0.026s] Initializing temporary storage... [0s] -Building reference histograms... [0.025s] +Building reference histograms... [0.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.059s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... 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[0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.026s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.007s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.032s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.016s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.029s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.03s] +Computing hash join... [0s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.063s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0.02s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.004s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.024s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.002s] +Building query seed array... [0.004s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.03s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.057s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.038s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] +Building reference seed array... [0.015s] +Building query seed array... [0.034s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.253s] +Computing alignments... [0.743s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -1544,484 +1580,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.326s +Total time = 7.204s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.mGUN0NAmih/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.xxQJIWAcNF/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.036s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.083s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.022s] Initializing temporary storage... [0s] -Building reference histograms... [0.027s] +Building reference histograms... [0.064s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.038s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.034s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.033s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.061s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.051s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.047s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.056s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.046s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.084s] +Computing alignments... [0.28s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2031,17 +2067,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.142s +Total time = 8.616s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.mGUN0NAmih/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.xxQJIWAcNF/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -2049,466 +2085,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.004s] +Masking queries... [0.026s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.051s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.019s] Initializing temporary storage... [0s] -Building reference histograms... [0.025s] +Building reference histograms... [0.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.03s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.033s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.037s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.037s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.033s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.149s] +Computing alignments... [0.643s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2518,484 +2554,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.021s +Total time = 8.774s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.mGUN0NAmih/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.xxQJIWAcNF/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.006s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.005s] +Loading query sequences... [0s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.059s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.016s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.05s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.017s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.029s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.024s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.02s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.025s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.02s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.025s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.003s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.02s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.024s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.216s] +Computing alignments... [0.906s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3005,17 +3041,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.093s +Total time = 8.25s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.mGUN0NAmih/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.xxQJIWAcNF/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -3023,466 +3059,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.002s] +Masking queries... [0.022s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.047s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.018s] Initializing temporary storage... [0s] -Building reference histograms... [0.025s] +Building reference histograms... [0.048s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.022s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.046s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.043s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.03s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.016s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.016s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.025s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.145s] +Computing alignments... [0.638s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3492,484 +3528,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.015s +Total time = 8.565s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.mGUN0NAmih/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.xxQJIWAcNF/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.022s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.042s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.013s] Initializing temporary storage... [0s] -Building reference histograms... [0.014s] +Building reference histograms... [0.042s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.037s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.048s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.047s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.036s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.013s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.043s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.033s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.043s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.036s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.028s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.044s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.207s] +Computing alignments... [0.986s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3979,17 +4015,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.082s +Total time = 8.926s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.mGUN0NAmih/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.xxQJIWAcNF/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -3997,458 +4033,458 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.025s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.022s] Initializing temporary storage... [0s] -Building reference histograms... [0.025s] +Building reference histograms... [0.047s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.021s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.037s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.034s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.018s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.025s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.038s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.026s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.043s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.024s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.015s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.053s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.019s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.022s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.004s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] @@ -4456,7 +4492,7 @@ Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.006s] +Computing alignments... [0.053s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4466,484 +4502,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.7s +Total time = 7.235s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.mGUN0NAmih/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.xxQJIWAcNF/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.01s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.064s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] +Masking reference... [0.011s] Initializing temporary storage... [0s] -Building reference histograms... [0s] +Building reference histograms... [0.03s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.02s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.025s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.037s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.033s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.02s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.027s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.042s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.034s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.016s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] +Building reference seed array... [0.006s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.004s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0s] +Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.004s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.016s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.024s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.021s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.028s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.026s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.04s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.006s] +Computing alignments... [0.068s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4953,484 +4989,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.698s +Total time = 7.429s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.mGUN0NAmih/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.xxQJIWAcNF/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.004s] +Loading query sequences... [0.005s] +Masking queries... [0.019s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.023s] Initializing temporary storage... [0s] -Building reference histograms... [0.027s] +Building reference histograms... [0.032s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.02s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.04s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.03s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.029s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.043s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.022s] +Building query seed array... [0.03s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.05s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.038s] +Computing hash join... [0.002s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.041s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.019s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.034s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.042s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.03s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.034s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.349s] +Computing alignments... [1.406s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -5440,484 +5476,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.301s +Total time = 9.189s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.mGUN0NAmih/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.xxQJIWAcNF/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.003s] +Loading query sequences... [0s] +Masking queries... [0.025s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.031s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.02s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.021s] +Building query seed array... [0.051s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.051s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.041s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.032s] +Building query seed array... [0.038s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.02s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.024s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.048s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.015s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.04s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.018s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.021s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.057s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.02s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.036s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.604s] +Computing alignments... [2.034s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -5927,17 +5963,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.563s +Total time = 9.579s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.mGUN0NAmih/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.xxQJIWAcNF/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -5945,466 +5981,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.004s] +Masking queries... [0.022s] Algorithm: Double-indexed -Building query histograms... [0.014s] +Building query histograms... [0.043s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.009s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.027s] +Building reference histograms... [0.042s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.021s] +Building query seed array... [0.024s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.025s] +Building query seed array... [0.038s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.021s] +Building query seed array... [0.026s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.022s] +Building query seed array... [0.016s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.033s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.024s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.037s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.041s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.04s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.044s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.028s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.021s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.018s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.051s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.032s] +Building query seed array... [0.018s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.016s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.02s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.02s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.037s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.026s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.047s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.049s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.024s] +Building query seed array... [0.037s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.054s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.356s] +Computing alignments... [1.402s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -6414,484 +6450,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.296s +Total time = 8.843s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.mGUN0NAmih/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.xxQJIWAcNF/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.017s] Algorithm: Double-indexed -Building query histograms... [0.026s] +Building query histograms... [0.06s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] +Masking reference... [0.012s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.042s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.037s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.04s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.029s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.018s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.02s] +Building query seed array... [0.016s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.059s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.021s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.054s] +Building query seed array... [0.036s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.02s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.013s] +Building query seed array... [0.021s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.02s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.045s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.054s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.017s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.051s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.644s] +Computing alignments... [2.677s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -6901,17 +6937,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.6s +Total time = 10.35s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.mGUN0NAmih/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.xxQJIWAcNF/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -6919,466 +6955,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.017s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.03s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.008s] +Masking reference... [0.025s] Initializing temporary storage... [0s] -Building reference histograms... [0.027s] +Building reference histograms... [0.049s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.053s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.018s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.044s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.027s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.029s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.034s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.03s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.058s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7388,484 +7424,484 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.676s +Total time = 8.088s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.mGUN0NAmih/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.xxQJIWAcNF/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.001s] -Masking queries... [0.008s] +Loading query sequences... [0s] +Masking queries... [0.019s] Algorithm: Double-indexed -Building query histograms... [0.027s] +Building query histograms... [0.067s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] +Masking reference... [0.019s] Initializing temporary storage... [0s] -Building reference histograms... [0s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.022s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.029s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.046s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.006s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.046s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.032s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.055s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.025s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.045s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7875,17 +7911,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.712s +Total time = 8.217s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.mGUN0NAmih/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.xxQJIWAcNF/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -7893,466 +7929,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.004s] +Masking queries... [0.012s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.058s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.012s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.028s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Building reference seed array... [0.038s] +Building query seed array... [0.055s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.039s] +Building query seed array... [0.056s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.019s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.049s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.033s] +Building query seed array... [0.025s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.026s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.028s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] -Deallocating memory... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.021s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] +Deallocating memory... [0.002s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.02s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.038s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.044s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.046s] +Building query seed array... [0.04s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.02s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.036s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.024s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.038s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.045s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.04s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.015s] +Building query seed array... [0.022s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.024s] +Building query seed array... [0.043s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.034s] +Building query seed array... [0.02s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.016s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.25s] +Computing alignments... [0.551s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8362,17 +8398,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.533s +Total time = 8.469s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.mGUN0NAmih/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.xxQJIWAcNF/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -8382,464 +8418,464 @@ Loading query sequences... [0s] Masking queries... [0.004s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.037s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.016s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.03s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Building reference seed array... [0.038s] +Building query seed array... [0.012s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.017s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.035s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.026s] +Building query seed array... [0.019s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.016s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.032s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.02s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.022s] +Building query seed array... [0.03s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.056s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.016s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.051s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.017s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.022s] +Building query seed array... [0.022s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.014s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.025s] +Building query seed array... [0.043s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.044s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.016s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.041s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.036s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.032s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.046s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.024s] +Building query seed array... [0.035s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Building reference seed array... [0.035s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.258s] +Computing alignments... [1.12s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8849,17 +8885,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 1.535s +Total time = 7.859s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.mGUN0NAmih/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.xxQJIWAcNF/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -8867,466 +8903,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.017s] Algorithm: Double-indexed -Building query histograms... [0.001s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.019s] Initializing temporary storage... [0s] -Building reference histograms... [0.006s] +Building reference histograms... [0.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.035s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.019s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.029s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.044s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.025s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.075s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9336,17 +9372,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.505s +Total time = 8.192s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.mGUN0NAmih/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.xxQJIWAcNF/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -9354,466 +9390,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.004s] +Masking queries... [0.023s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.059s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] +Masking reference... [0.022s] Initializing temporary storage... [0s] -Building reference histograms... [0s] +Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.035s] +Building query seed array... [0.028s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.055s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.008s] +Building query seed array... [0.019s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.003s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] +Building reference seed array... [0.011s] +Building query seed array... [0.016s] +Computing hash join... [0.007s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.02s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.024s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.025s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.026s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.021s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.016s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.064s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9823,17 +9859,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.515s +Total time = 6.31s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.mGUN0NAmih/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.xxQJIWAcNF/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -9841,466 +9877,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.016s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.022s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] +Masking reference... [0.011s] Initializing temporary storage... [0s] -Building reference histograms... [0.013s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.038s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.011s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.018s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.022s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.017s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.022s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] +Building reference seed array... [0.001s] +Building query seed array... [0.004s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.001s] Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.018s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.051s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.043s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.056s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.016s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.022s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.057s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10310,17 +10346,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.508s +Total time = 6.204s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.mGUN0NAmih/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.xxQJIWAcNF/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.mGUN0NAmih +Temporary directory: /tmp/tmp.xxQJIWAcNF #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -10328,466 +10364,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.002s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0.013s] +Building query histograms... [0.075s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] +Masking reference... [0.027s] Initializing temporary storage... [0s] -Building reference histograms... [0s] +Building reference histograms... [0.032s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.036s] Computing hash join... [0s] -Masking low complexity seeds... [0s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.028s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.055s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.024s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.04s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.032s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.04s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.028s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.04s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.02s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.007s] +Computing alignments... [0.075s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10797,10 +10833,10 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.518s +Total time = 7.889s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ rm -rf /tmp/tmp.mGUN0NAmih ++ rm -rf /tmp/tmp.xxQJIWAcNF make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep @@ -10850,12 +10886,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2558194/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1494810 and its subdirectories -I: Current time: Sat Apr 11 11:42:06 -12 2026 -I: pbuilder-time-stamp: 1775950926 +I: removing directory /srv/workspace/pbuilder/2558194 and its subdirectories +I: Current time: Mon Mar 10 07:33:56 +14 2025 +I: pbuilder-time-stamp: 1741541636