Diff of the two buildlogs: -- --- b1/build.log 2025-11-02 00:58:25.771534310 +0000 +++ b2/build.log 2025-11-02 01:10:51.260176508 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 1 12:55:10 -12 2025 -I: pbuilder-time-stamp: 1762044910 +I: Current time: Sat Dec 5 21:31:28 +14 2026 +I: pbuilder-time-stamp: 1796455888 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying doc-makefile I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1693627/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 5 07:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='4a77227ef457402cbfb2435ad4f7b758' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1693627' - PS1='# ' - PS2='> ' + INVOCATION_ID=69889389c7124073b44ea029bf1f9fdf + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=56561 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NxdMlngJ/pbuilderrc_VQtl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NxdMlngJ/b1 --logfile b1/build.log gap-cryst_4.1.30-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NxdMlngJ/pbuilderrc_3FuC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NxdMlngJ/b2 --logfile b2/build.log gap-cryst_4.1.30-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1693627/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -283,7 +315,7 @@ Get: 155 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 156 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 157 http://deb.debian.org/debian unstable/main arm64 tth arm64 4.16+ds-2 [252 kB] -Fetched 288 MB in 3s (93.9 MB/s) +Fetched 288 MB in 2s (181 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -810,8 +842,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 2 00:55:55 UTC 2025. -Universal Time is now: Sun Nov 2 00:55:55 UTC 2025. +Local time is now: Sat Dec 5 07:31:59 UTC 2026. +Universal Time is now: Sat Dec 5 07:31:59 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... @@ -955,7 +987,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gap-cryst-4.1.30/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gap-cryst_4.1.30-1_source.changes +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gap-cryst-4.1.30/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gap-cryst_4.1.30-1_source.changes dpkg-buildpackage: info: source package gap-cryst dpkg-buildpackage: info: source version 4.1.30-1 dpkg-buildpackage: info: source distribution unstable @@ -997,7 +1033,8 @@ Label `cryst:Contents' has changed. \makelabel{cryst:Contents}{{\setbox 0=\hbox {1}\vrule width 0pt height\ht 0}} Chapter `Contents' . -(./manual.toc) [2.1 +No file manual.toc. +[2.1 \chapcontents {\tocstrut }{Contents}{2} ] No file manual.lab. @@ -1130,7 +1167,8 @@ ) [16.2] Label `cryst:Bibliography' has changed. Chapter `Bibliography' . -(./manual.bbl) [17.3] +No file manual.bbl. +[17.3] Label `cryst:Index' has changed. Chapter `Index' . No file manual.ind. @@ -1146,7 +1184,7 @@ ## [18.4] ) (see the transcript file for additional information) -Output written on manual.dvi (18 pages, 52604 bytes). +Output written on manual.dvi (18 pages, 48516 bytes). Transcript written on manual.log. This is TeX, Version 3.141592653 (TeX Live 2025/Debian) (preloaded format=tex) (./manual.tex (/usr/share/gap/etc/gapmacro.tex @@ -1161,6 +1199,10 @@ \chapcontents {\tocstrut }{Contents}{2} ] (./manual.lab) (./introduction.tex Chapter `Introduction' . +Reference `Hah95' undefined. +Reference `Won95' undefined. +Reference `BBNWZ78' undefined. +Reference `EGN97' undefined. ) (./cryst.tex [3.1] Chapter `Affine crystallographic groups' . [4.2] [5.2] [6.2] [7.2] [8.2] @@ -1168,7 +1210,8 @@ Label `cryst:SpaceGroupTypesByPointGroupOnLeft' has changed. [9.2] [10.2] [11.2] [12.2] [13.2] [14.2] [15.2]) [16.2] Chapter `Bibliography' . -(./manual.bbl) [17.3] +No file manual.bbl. +[17.3] Chapter `Index' . No file manual.ind. ## @@ -1178,10 +1221,11 @@ ## Label definitions written on manual.lab. ## Table of contents written on manual.toc. ## Examples written to manual.example-XX.tst. +## There were undefined labels or references. ## Labels have changed, run again. (Or they were multiply defined.) ## [18.4] ) -Output written on manual.dvi (18 pages, 52504 bytes). +Output written on manual.dvi (18 pages, 51628 bytes). Transcript written on manual.log. This is makeindex, version 2.17 [TeX Live 2025] (kpathsea + Thai support). Scanning style file ./manual.mst................done (16 attributes redefined, 0 ignored). @@ -1204,6 +1248,10 @@ \chapcontents {\tocstrut }{Contents}{2} ] (./manual.lab) (./introduction.tex Chapter `Introduction' . +Reference `Hah95' undefined. +Reference `Won95' undefined. +Reference `BBNWZ78' undefined. +Reference `EGN97' undefined. ) (./cryst.tex [3.1] Chapter `Affine crystallographic groups' . [4.2] [5.2] [6.2] [7.2] [8.2] @@ -1211,7 +1259,8 @@ Label `cryst:SpaceGroupTypesByPointGroupOnLeft' has changed. [9.2] [10.2] [11.2] [12.2] [13.2] [14.2] [15.2]) [16.2] Chapter `Bibliography' . -(./manual.bbl) [17.3] +No file manual.bbl. +[17.3] Chapter `Index' . (./manual.ind [18.4]) [19.4] ## @@ -1221,10 +1270,11 @@ ## Label definitions written on manual.lab. ## Table of contents written on manual.toc. ## Examples written to manual.example-XX.tst. +## There were undefined labels or references. ## Labels have changed, run again. (Or they were multiply defined.) ## ) -Output written on manual.dvi (19 pages, 56412 bytes). +Output written on manual.dvi (19 pages, 55536 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdftex) restricted \write18 enabled. @@ -1243,6 +1293,10 @@ \chapcontents {\tocstrut }{Contents}{2} ] (./manual.lab) (./introduction.tex Chapter `Introduction' . +Reference `Hah95' undefined. +Reference `Won95' undefined. +Reference `BBNWZ78' undefined. +Reference `EGN97' undefined. ) (./cryst.tex [3.1] Chapter `Affine crystallographic groups' . [4.2] [5.2] [6.2] [7.2] [8.2] @@ -1250,7 +1304,8 @@ Label `cryst:SpaceGroupTypesByPointGroupOnLeft' has changed. [9.2] [10.2] [11.2] [12.2] [13.2] [14.2] [15.2]) [16.2] Chapter `Bibliography' . -(./manual.bbl) [17.3] +No file manual.bbl. +[17.3] Chapter `Index' . (./manual.ind [18.4]) [19.4] ## @@ -1260,20 +1315,36 @@ ## Label definitions written on manual.lab. ## Table of contents written on manual.toc. ## Examples written to manual.example-XX.tst. +## There were undefined labels or references. ## Labels have changed, run again. (Or they were multiply defined.) ## - )< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> -Output written on manual.pdf (19 pages, 164443 bytes). + ) +pdfTeX warning (dest): name{citation@EGN97} has been referenced but does not ex +ist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@BBNWZ78} has been referenced but does not +exist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@Won95} has been referenced but does not ex +ist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@Hah95} has been referenced but does not ex +ist, replaced by a fixed one + + +Output written on manual.pdf (19 pages, 151406 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdftex) restricted \write18 enabled. @@ -1292,6 +1363,10 @@ \chapcontents {\tocstrut }{Contents}{2} ] (./manual.lab) (./introduction.tex Chapter `Introduction' . +Reference `Hah95' undefined. +Reference `Won95' undefined. +Reference `BBNWZ78' undefined. +Reference `EGN97' undefined. ) (./cryst.tex [3.1] Chapter `Affine crystallographic groups' . [4.2] [5.2] [6.2] [7.2] [8.2] @@ -1299,7 +1374,8 @@ Label `cryst:SpaceGroupTypesByPointGroupOnLeft' has changed. [9.2] [10.2] [11.2] [12.2] [13.2] [14.2] [15.2]) [16.2] Chapter `Bibliography' . -(./manual.bbl) [17.3] +No file manual.bbl. +[17.3] Chapter `Index' . (./manual.ind [18.4]) [19.4] ## @@ -1309,20 +1385,36 @@ ## Label definitions written on manual.lab. ## Table of contents written on manual.toc. ## Examples written to manual.example-XX.tst. +## There were undefined labels or references. ## Labels have changed, run again. (Or they were multiply defined.) ## - )< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> -Output written on manual.pdf (19 pages, 164443 bytes). + ) +pdfTeX warning (dest): name{citation@EGN97} has been referenced but does not ex +ist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@BBNWZ78} has been referenced but does not +exist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@Won95} has been referenced but does not ex +ist, replaced by a fixed one + + +pdfTeX warning (dest): name{citation@Hah95} has been referenced but does not ex +ist, replaced by a fixed one + + +Output written on manual.pdf (19 pages, 151406 bytes). Transcript written on manual.log. Creating HTML documentation convert.pl: Please set GAP_CONVERT_DATE to the upstream document date @@ -1506,37 +1598,12 @@ 1. Introduction ... introduction.tex 2. Affine crystallographic groups ... cryst.tex and the chapters page +Warning: did not find a .bbl file ... ok? and the index pages and the references done make[2]: Leaving directory '/build/reproducible-path/gap-cryst-4.1.30/doc' make[1]: Leaving directory '/build/reproducible-path/gap-cryst-4.1.30' - debian/rules execute_after_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/gap-cryst-4.1.30' -echo 'SetPackagePath("Cryst","."); Read("tst/testall.g");' \ -| gap -q -R -A | tee debian/gap.tst -#I crystcat package is not available. Check that the name is correct -#I and it is present in one of the GAP root directories (see '??RootPaths') -Architecture: aarch64-unknown-linux-gnu-default64-kv10 - -testing: ./tst/cryst.tst - 12294 ms (304 ms GC) and 1.04GB allocated for cryst.tst -testing: ./tst/manual.tst - 293 ms (44 ms GC) and 28.1MB allocated for manual.tst -testing: ./tst/subgrp.tst - 2647 ms (122 ms GC) and 301MB allocated for subgrp.tst -testing: ./tst/wyckoff.tst - 1508 ms (96 ms GC) and 224MB allocated for wyckoff.tst -testing: ./tst/zass.tst - 438 ms (56 ms GC) and 51.9MB allocated for zass.tst ------------------------------------ -total 17180 ms (622 ms GC) and 1.63GB allocated - 0 failures in 5 files - -#I No errors detected while testing - -grep -q "^#I No errors detected while testing" debian/gap.tst -make[1]: Leaving directory '/build/reproducible-path/gap-cryst-4.1.30' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/gap-cryst/ @@ -1590,12 +1657,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/56561/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1693627 and its subdirectories -I: Current time: Sat Nov 1 12:58:25 -12 2025 -I: pbuilder-time-stamp: 1762045105 +I: removing directory /srv/workspace/pbuilder/56561 and its subdirectories +I: Current time: Sat Dec 5 21:33:50 +14 2026 +I: pbuilder-time-stamp: 1796456030