Diff of the two buildlogs: -- --- b1/build.log 2025-09-01 12:16:09.765991823 +0000 +++ b2/build.log 2025-09-01 12:17:22.402080460 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 4 06:38:00 -12 2026 -I: pbuilder-time-stamp: 1791139080 +I: Current time: Tue Sep 2 02:16:11 +14 2025 +I: pbuilder-time-stamp: 1756728971 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying fix_build_debian.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1222403/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 1 12:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='925fc4adc56745918e136304753267cd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1222403' - PS1='# ' - PS2='> ' + INVOCATION_ID=9d4668644aa94c749fc838cabf192398 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2469550 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kxckrztz/pbuilderrc_OQi9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kxckrztz/b1 --logfile b1/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kxckrztz/pbuilderrc_O5G3 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kxckrztz/b2 --logfile b2/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1222403/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -355,7 +387,7 @@ Get: 237 http://deb.debian.org/debian unstable/main arm64 gradle-debian-helper all 2.4 [24.5 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.80 [9692 B] Get: 239 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.80 [80.4 kB] -Fetched 249 MB in 1s (261 MB/s) +Fetched 249 MB in 1s (278 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20011 files and directories currently installed.) @@ -1141,8 +1173,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 4 18:38:31 UTC 2026. -Universal Time is now: Sun Oct 4 18:38:31 UTC 2026. +Local time is now: Mon Sep 1 12:16:47 UTC 2025. +Universal Time is now: Mon Sep 1 12:16:47 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1540,7 +1572,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package gatk-native-bindings dpkg-buildpackage: info: source version 1.1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1556,8 +1592,8 @@ dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* -Duplicate specification "unlink|u" for option "u" Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper debian/rules override_dh_clean @@ -1586,7 +1622,7 @@ dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle Duplicate specification "u=s" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' dh_auto_build -- jar @@ -1600,18 +1636,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.777 secs. -The client will now receive all logging from the daemon (pid: 1259019). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-1259019.out.log +An attempt to start the daemon took 0.963 secs. +The client will now receive all logging from the daemon (pid: 2479177). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-2479177.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2945d976 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2945d976 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2151f01f +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@45e683fd +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@45e683fd +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@de4829d Starting Build Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@746999a0 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c0231e1 Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1631,45 +1667,45 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@26208b8c +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@77647db3 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2151f01f -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@12a8c021 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@297b2c07 -:compileJava (Thread[#55,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@de4829d +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ab87d66 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@4748c023 +:compileJava (Thread[#57,Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.014 secs. -Up-to-date check for task ':compileJava' took 0.05 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Up-to-date check for task ':compileJava' took 0.021 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 1.302 secs. -:processResources (Thread[#55,Task worker for ':',5,main]) started. +:compileJava (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.728 secs. +:processResources (Thread[#57,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.017 secs. -:classes (Thread[#55,Task worker for ':',5,main]) started. +:processResources (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.003 secs. +:classes (Thread[#57,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[#55,Task worker for ':',5,main]) started. +:classes (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[#57,Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build/debian/gatk-native-bindings.pom -:debianMavenPom (Thread[#55,Task worker for ':',5,main]) completed. Took 0.114 secs. -:jar (Thread[#63,Task worker for ':' Thread 9,5,main]) started. +:debianMavenPom (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.097 secs. +:jar (Thread[#57,Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.007 secs. It is not up-to-date because: No history is available. -:jar (Thread[#63,Task worker for ':' Thread 9,5,main]) completed. Took 0.082 secs. +:jar (Thread[#57,Task worker for ':' Thread 3,5,main]) completed. Took 0.051 secs. -BUILD SUCCESSFUL in 7s +BUILD SUCCESSFUL in 5s 3 actionable tasks: 3 executed make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' jh_build -O--buildsystem=gradle @@ -1690,17 +1726,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.981 secs. -The client will now receive all logging from the daemon (pid: 1267046). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-1267046.out.log +An attempt to start the daemon took 0.898 secs. +The client will now receive all logging from the daemon (pid: 2480245). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-2480245.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@66a05fa -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@66a05fa -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f7fab6d +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ea87db0 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ea87db0 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ab2cfd4 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@51571550 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@314fc592 Settings evaluated using settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build.gradle'. Included projects: [root project 'gatk-native-bindings'] @@ -1715,56 +1751,56 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3307e4be +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@49f7cc63 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f7fab6d -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@55b1691c -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@48c82446 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ab2cfd4 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@13962d84 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e7ad7d8 :compileJava (Thread[#55,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.043 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.09 secs). +Putting task artifact state for task ':compileJava' into context took 0.015 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.054 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.234 secs. -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.116 secs. +:processResources (Thread[#55,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.013 secs. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.003 secs. +:classes (Thread[#55,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#55,Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/java', not found Skipping task ':compileTestJava' as it has no source files and no previous output files. :compileTestJava NO-SOURCE -:compileTestJava (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.014 secs. -:processTestResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:compileTestJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. +:processTestResources (Thread[#55,Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.003 secs. -:testClasses (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:processTestResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. +:testClasses (Thread[#55,Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses UP-TO-DATE -:testClasses (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:test (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:testClasses (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. +:test (Thread[#55,Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs. +:test (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. -BUILD SUCCESSFUL in 11s +BUILD SUCCESSFUL in 5s 1 actionable task: 1 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -1775,8 +1811,8 @@ dh_auto_install --destdir=debian/libgatk-native-bindings-java/ -O--buildsystem=gradle install -m0755 -d /build/reproducible-path/gatk-native-bindings-1.1.0\+dfsg/debian/libgatk-native-bindings-java jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "A" for option "A" -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" +Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java install -p -m0644 debian/copyright debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java/copyright @@ -1794,13 +1830,13 @@ jh_classpath -O--buildsystem=gradle jh_manifest -plibgatk-native-bindings-java --classpath=/usr/lib/jvm/default-java/lib/tools.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar Duplicate specification "version|V" for option "V" -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" Updating symlinked /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar (via debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar) Reading manifest from /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar Updating manifest in /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar jh_manifest -O--buildsystem=gradle Duplicate specification "V:s" for option "V" -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" find debian/libgatk-native-bindings-java -name '*.jar' Found usr/share/java/gatk-native-bindings-1.1.0.jar Found symlink usr/share/java/gatk-native-bindings.jar @@ -1887,12 +1923,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2469550/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1222403 and its subdirectories -I: Current time: Sun Oct 4 06:39:08 -12 2026 -I: pbuilder-time-stamp: 1791139148 +I: removing directory /srv/workspace/pbuilder/2469550 and its subdirectories +I: Current time: Tue Sep 2 02:17:21 +14 2025 +I: pbuilder-time-stamp: 1756729041