Diff of the two buildlogs: -- --- b1/build.log 2025-10-26 19:18:49.628621947 +0000 +++ b2/build.log 2025-10-26 19:19:49.572704869 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 26 07:17:36 -12 2025 -I: pbuilder-time-stamp: 1761506256 +I: Current time: Sun Nov 29 15:41:51 +14 2026 +I: pbuilder-time-stamp: 1795916511 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1825206/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 29 01:41 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='45c3d9fe56b44a47925d663c987fc1b8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1825206' - PS1='# ' - PS2='> ' + INVOCATION_ID=57d94bc4fb9746e3acd44bc6d5c0ce95 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2028611 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lktFWUIi/pbuilderrc_hmE1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lktFWUIi/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lktFWUIi/pbuilderrc_8FQ1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lktFWUIi/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1825206/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -223,7 +255,7 @@ Get: 95 http://deb.debian.org/debian unstable/main arm64 golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 97 http://deb.debian.org/debian unstable/main arm64 golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 107 MB in 1s (126 MB/s) +Fetched 107 MB in 1s (194 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -551,8 +583,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 26 19:18:00 UTC 2025. -Universal Time is now: Sun Oct 26 19:18:00 UTC 2025. +Local time is now: Sun Nov 29 01:42:11 UTC 2026. +Universal Time is now: Sun Nov 29 01:42:11 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -638,7 +670,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.8-1 dpkg-buildpackage: info: source distribution unstable @@ -657,259 +693,259 @@ dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 12 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/goos internal/byteorder -internal/unsafeheader -internal/msan -internal/goarch +internal/coverage/rtcov internal/godebugs +internal/goos +internal/profilerecord +internal/goexperiment +internal/msan +internal/unsafeheader internal/asan -internal/coverage/rtcov -internal/runtime/syscall +internal/cpu cmp +internal/goarch +internal/runtime/syscall internal/itoa -internal/goexperiment -internal/profilerecord math/bits unicode/utf8 -internal/cpu +github.com/dsnet/compress/bzip2/internal/sais sync/atomic unicode -github.com/dsnet/compress/bzip2/internal/sais github.com/dsnet/compress/internal crypto/internal/fips140/alias -internal/abi -internal/runtime/math -internal/chacha8rand crypto/internal/fips140deps/byteorder -crypto/internal/fips140/subtle crypto/internal/boring/sig -math +crypto/internal/fips140/subtle +internal/abi +internal/chacha8rand +internal/runtime/math github.com/klauspost/compress/internal/le log/internal +internal/bytealg +internal/runtime/atomic +internal/runtime/sys +crypto/internal/fips140deps/cpu github.com/ulikunitz/xz/internal/hash +math container/list unicode/utf16 vendor/golang.org/x/crypto/cryptobyte/asn1 vendor/golang.org/x/crypto/internal/alias internal/nettrace -internal/bytealg -internal/runtime/atomic -internal/runtime/sys -crypto/internal/fips140deps/cpu github.com/elliotwutingfeng/asciiset -internal/runtime/exithook internal/stringslite +internal/runtime/exithook github.com/klauspost/compress internal/race internal/sync internal/runtime/maps runtime +internal/reflectlite iter weak crypto/subtle -internal/reflectlite sync maps slices errors sort -internal/bisect -internal/singleflight -unique -internal/testlog -runtime/cgo -strconv -io internal/oserror -path -math/rand/v2 vendor/golang.org/x/net/dns/dnsmessage +math/rand/v2 +path +strconv +internal/testlog +internal/singleflight +internal/bisect +io syscall +unique +runtime/cgo internal/godebug -hash -crypto/internal/randutil bytes -internal/saferio strings +crypto/internal/randutil +internal/saferio +hash reflect hash/crc32 +net/netip +crypto crypto/internal/fips140deps/godebug math/rand hash/crc64 -crypto -net/netip -crypto/internal/fips140 +vendor/golang.org/x/text/transform +github.com/twotwotwo/sorts +bufio +github.com/dsnet/compress/internal/errors crypto/internal/impl +crypto/internal/fips140 net/http/internal/ascii regexp/syntax -github.com/dsnet/compress/internal/errors -crypto/tls/internal/fips140tls -crypto/internal/fips140/sha3 -bufio crypto/internal/fips140/sha256 crypto/internal/fips140/sha512 -vendor/golang.org/x/text/transform -github.com/twotwotwo/sorts -crypto/internal/fips140/hmac -crypto/sha3 +crypto/internal/fips140/sha3 +crypto/tls/internal/fips140tls github.com/twotwotwo/sorts/sortutil github.com/shenwei356/bio/util -time +github.com/dsnet/compress +crypto/sha3 +crypto/internal/fips140/hmac +crypto/internal/fips140/check internal/syscall/unix internal/syscall/execenv -crypto/internal/fips140/check -github.com/dsnet/compress +time crypto/internal/fips140hash -crypto/internal/fips140/edwards25519/field -crypto/internal/fips140/hkdf -crypto/internal/fips140/bigmod crypto/internal/fips140/aes +crypto/internal/fips140/bigmod +crypto/internal/fips140/hkdf +crypto/internal/fips140/edwards25519/field crypto/internal/fips140/nistec/fiat crypto/internal/fips140/tls12 crypto/internal/fips140/tls13 crypto/internal/fips140/edwards25519 regexp io/fs -internal/poll context +internal/poll crypto/internal/fips140/nistec internal/filepathlite os internal/fmtsort encoding/binary -crypto/internal/sysrand -path/filepath -net -fmt github.com/cespare/xxhash -github.com/klauspost/compress/internal/snapref +github.com/zeebo/wyhash vendor/golang.org/x/crypto/internal/poly1305 -golang.org/x/sys/unix +github.com/klauspost/compress/internal/snapref encoding/base64 +golang.org/x/sys/unix +encoding/pem +crypto/internal/sysrand +fmt +path/filepath +net crypto/internal/entropy -github.com/zeebo/wyhash crypto/internal/fips140/drbg -crypto/internal/fips140/aes/gcm crypto/internal/fips140only +crypto/internal/fips140/aes/gcm crypto/internal/fips140/ecdh crypto/internal/fips140/ed25519 crypto/internal/fips140/ecdsa crypto/internal/fips140/mlkem crypto/internal/fips140/rsa -encoding/pem +os/exec crypto/md5 crypto/rc4 -os/exec crypto/cipher +encoding/hex +log +github.com/dsnet/compress/internal/prefix crypto/internal/boring +github.com/klauspost/compress/fse +runtime/debug +compress/flate +github.com/ulikunitz/xz/internal/xlog crypto/des -vendor/golang.org/x/crypto/chacha20 +math/big +crypto/sha256 crypto/aes crypto/ecdh crypto/sha512 +github.com/ulikunitz/xz/lzma crypto/hmac +vendor/golang.org/x/crypto/chacha20 crypto/sha1 -crypto/sha256 -vendor/golang.org/x/crypto/chacha20poly1305 -github.com/dsnet/compress/internal/prefix -github.com/klauspost/compress/fse -runtime/debug -encoding/hex -github.com/ulikunitz/xz/internal/xlog -log -vendor/golang.org/x/text/unicode/norm -compress/flate +github.com/klauspost/compress/huff0 net/url -math/big -vendor/golang.org/x/net/http2/hpack vendor/golang.org/x/text/unicode/bidi +vendor/golang.org/x/text/unicode/norm +github.com/klauspost/compress/flate +compress/gzip +github.com/dsnet/compress/bzip2 +vendor/golang.org/x/crypto/chacha20poly1305 +vendor/golang.org/x/net/http2/hpack mime -github.com/ulikunitz/xz/lzma -github.com/klauspost/compress/huff0 mime/quotedprintable -github.com/dsnet/compress/bzip2 net/http/internal -os/user vendor/golang.org/x/text/secure/bidirule +os/user github.com/shenwei356/util/byteutil -github.com/klauspost/compress/flate -compress/gzip github.com/will-rowe/nthash github.com/shenwei356/bio/seq -github.com/shenwei356/bio/sketches -vendor/golang.org/x/net/idna github.com/ulikunitz/xz +github.com/edsrzf/mmap-go +vendor/golang.org/x/net/idna +github.com/shenwei356/bio/sketches crypto/rand -crypto/internal/boring/bbig crypto/elliptic +crypto/internal/boring/bbig encoding/asn1 crypto/dsa -github.com/klauspost/pgzip +github.com/shenwei356/bio/seqio/fai +github.com/klauspost/compress/zstd crypto/ed25519 crypto/internal/hpke crypto/rsa -github.com/klauspost/compress/zstd -github.com/edsrzf/mmap-go -github.com/shenwei356/bio/seqio/fai +github.com/klauspost/pgzip vendor/golang.org/x/crypto/cryptobyte crypto/x509/pkix crypto/ecdsa -crypto/x509 -net/textproto vendor/golang.org/x/net/http/httpproxy -mime/multipart +net/textproto +crypto/x509 vendor/golang.org/x/net/http/httpguts +mime/multipart crypto/tls net/http/httptrace net/http github.com/shenwei356/xopen github.com/shenwei356/breader -github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/taxdump +github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang cd _build && go test -vet=off -v -p 12 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0x4000034540 []} -{140 Twinscan inter_CNS 8523 9711 0x4000034560 []} -{140 Twinscan inter 9712 13182 0x4000034570 []} -{140 Twinscan 3UTR 65149 65487 0x4000034580 []} -{140 Twinscan 3UTR 66823 66992 0x4000034590 []} -{140 Twinscan stop_codon 66993 66995 0x40000345a0 0x40000103d0 []} -{140 Twinscan CDS 66996 66999 0x40000345b0 0x40000103d8 []} -{140 Twinscan intron_CNS 70103 70151 0x40000345c0 []} -{140 Twinscan CDS 70207 70294 0x40000345d0 0x40000103e0 []} -{140 Twinscan CDS 71696 71807 0x40000345e0 0x40000103e8 []} -{140 Twinscan start_codon 71805 71806 0x40000345f0 0x40000103f0 []} -{140 Twinscan start_codon 73222 73222 0x4000034600 0x40000103f8 []} -{140 Twinscan CDS 73222 73222 0x4000034610 0x4000010400 []} -{140 Twinscan 5UTR 73223 73504 0x4000034620 []} +{140 Twinscan inter 5141 8522 0x40000ac520 []} +{140 Twinscan inter_CNS 8523 9711 0x40000ac540 []} +{140 Twinscan inter 9712 13182 0x40000ac550 []} +{140 Twinscan 3UTR 65149 65487 0x40000ac560 []} +{140 Twinscan 3UTR 66823 66992 0x40000ac570 []} +{140 Twinscan stop_codon 66993 66995 0x40000ac580 0x40000bc2d0 []} +{140 Twinscan CDS 66996 66999 0x40000ac590 0x40000bc2d8 []} +{140 Twinscan intron_CNS 70103 70151 0x40000ac5a0 []} +{140 Twinscan CDS 70207 70294 0x40000ac5b0 0x40000bc2e0 []} +{140 Twinscan CDS 71696 71807 0x40000ac5c0 0x40000bc2e8 []} +{140 Twinscan start_codon 71805 71806 0x40000ac5d0 0x40000bc2f0 []} +{140 Twinscan start_codon 73222 73222 0x40000ac5e0 0x40000bc2f8 []} +{140 Twinscan CDS 73222 73222 0x40000ac5f0 0x40000bc300 []} +{140 Twinscan 5UTR 73223 73504 0x40000ac600 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0x4000034690 []} -{381 Twinscan exon 300 401 0x40000346b0 []} -{381 Twinscan CDS 380 401 0x40000346c0 0x4000010470 []} -{381 Twinscan exon 501 650 0x40000346d0 []} -{381 Twinscan CDS 501 650 0x40000346e0 0x4000010478 []} -{381 Twinscan exon 700 800 0x40000346f0 []} -{381 Twinscan CDS 700 707 0x4000034700 0x4000010480 []} -{381 Twinscan exon 900 1000 0x4000034710 []} -{381 Twinscan start_codon 380 382 0x4000034720 0x4000010488 []} -{381 Twinscan stop_codon 708 710 0x4000034730 0x4000010490 []} +{381 Twinscan exon 150 200 0x40000ac670 []} +{381 Twinscan exon 300 401 0x40000ac690 []} +{381 Twinscan CDS 380 401 0x40000ac6a0 0x40000bc370 []} +{381 Twinscan exon 501 650 0x40000ac6b0 []} +{381 Twinscan CDS 501 650 0x40000ac6c0 0x40000bc378 []} +{381 Twinscan exon 700 800 0x40000ac6d0 []} +{381 Twinscan CDS 700 707 0x40000ac6e0 0x40000bc380 []} +{381 Twinscan exon 900 1000 0x40000ac6f0 []} +{381 Twinscan start_codon 380 382 0x40000ac700 0x40000bc388 []} +{381 Twinscan stop_codon 708 710 0x40000ac710 0x40000bc390 []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0x40000347a0 0x4000010500 []} -{NC_002516.2 genbank CDS 6261828 6263564 0x40000347c0 0x4000010508 []} -{NC_002516.2 genbank gene 6263805 6264212 0x40000347d0 0x4000010510 []} -{NC_002516.2 genbank CDS 6263805 6264212 0x40000347e0 0x4000010518 []} -{NC_002516.2 genbank gene 6264227 6264361 0x40000347f0 0x4000010520 []} -{NC_002516.2 genbank CDS 6264227 6264361 0x4000034800 0x4000010528 []} +{NC_002516.2 genbank gene 6261828 6263564 0x4000198000 0x400018a020 []} +{NC_002516.2 genbank CDS 6261828 6263564 0x4000198020 0x400018a028 []} +{NC_002516.2 genbank gene 6263805 6264212 0x4000198030 0x400018a030 []} +{NC_002516.2 genbank CDS 6263805 6264212 0x4000198040 0x400018a038 []} +{NC_002516.2 genbank gene 6264227 6264361 0x4000198050 0x400018a040 []} +{NC_002516.2 genbank CDS 6264227 6264361 0x4000198060 0x400018a048 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.012s +ok github.com/shenwei356/bio/featio/gtf 0.011s === RUN TestAlphabet ---- PASS: TestAlphabet (0.01s) +--- PASS: TestAlphabet (0.00s) === RUN TestAlphabet2 --- PASS: TestAlphabet2 (0.00s) === RUN TestBases2AmbBase @@ -931,17 +967,17 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.075s +ok github.com/shenwei356/bio/seq 0.021s === RUN TestFastaReader --- PASS: TestFastaReader (0.00s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.01s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.00s) +--- PASS: TestFastaReader2NotMapWholeFile (0.01s) === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.01s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.102s +ok github.com/shenwei356/bio/seqio/fai 0.062s === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.00s) === RUN TestFastaReader3 @@ -951,7 +987,7 @@ === RUN TestFastaReader --- PASS: TestFastaReader (0.01s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.01s) +--- PASS: TestFastqReader (0.00s) === RUN TestFastqReader2 --- PASS: TestFastqReader2 (0.00s) === RUN TestFastqReader3 @@ -959,11 +995,11 @@ === RUN TestBlankFile --- PASS: TestBlankFile (0.00s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.01s) +--- PASS: TestBlankFile2 (0.00s) === RUN TestEmptyFile --- PASS: TestEmptyFile (0.00s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.141s +ok github.com/shenwei356/bio/seqio/fastx 0.053s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -979,15 +1015,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.061s +ok github.com/shenwei356/bio/sketches 0.034s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.030s +ok github.com/shenwei356/bio/taxdump 0.017s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.017s +ok github.com/shenwei356/bio/util 0.007s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -1019,12 +1055,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2028611/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1825206 and its subdirectories -I: Current time: Sun Oct 26 07:18:48 -12 2025 -I: pbuilder-time-stamp: 1761506328 +I: removing directory /srv/workspace/pbuilder/2028611 and its subdirectories +I: Current time: Sun Nov 29 15:42:49 +14 2026 +I: pbuilder-time-stamp: 1795916569