Diff of the two buildlogs: -- --- b1/build.log 2025-02-07 12:21:17.317425673 +0000 +++ b2/build.log 2025-02-07 12:23:38.327034625 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 00:19:26 -12 2025 -I: pbuilder-time-stamp: 1738930766 +I: Current time: Fri Mar 13 08:44:20 +14 2026 +I: pbuilder-time-stamp: 1773341060 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3982520/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 12 18:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c9dd4bb8fe484107a4ac8854992936d9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3982520' - PS1='# ' - PS2='> ' + INVOCATION_ID=9d6dfb6c449e4e0b872acd599c189107 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1394243 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SZRh3jNY/pbuilderrc_NTkf --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SZRh3jNY/b1 --logfile b1/build.log htslib_1.21+ds-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SZRh3jNY/pbuilderrc_Yarj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SZRh3jNY/b2 --logfile b2/build.log htslib_1.21+ds-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3982520/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -218,7 +250,7 @@ Get: 91 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libhtscodecs-dev arm64 1.6.1-1 [2979 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] -Fetched 40.3 MB in 0s (171 MB/s) +Fetched 40.3 MB in 0s (187 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) @@ -605,7 +637,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.21+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.21+ds-1_source.changes +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.21+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.21+ds-1_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.21+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -1192,203 +1228,203 @@ bgzip --output 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 14 -x /tmp/_DnbIto0r2/index.bam.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 14 -x /tmp/x7UG_WciG3/index.bam.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 0 -x /tmp/_DnbIto0r2/index.bam.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 0 -x /tmp/x7UG_WciG3/index.bam.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -C -x /tmp/_DnbIto0r2/index.cram.crai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.cram + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -C -x /tmp/x7UG_WciG3/index.cram.crai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index /tmp/_DnbIto0r2/index.cram + /build/reproducible-path/htslib-1.21+ds/test/test_index /tmp/x7UG_WciG3/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 14 -x /tmp/_DnbIto0r2/index.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.bcf + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -b -m 14 -x /tmp/x7UG_WciG3/index.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.bcf + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.vcf.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.vcf.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.vcf.gz.tbi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.vcf.gz.tbi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -t /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -t /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/tabix /tmp/_DnbIto0r2/index.vcf.gz##idx##/tmp/_DnbIto0r2/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.21+ds/tabix /tmp/x7UG_WciG3/index.vcf.gz##idx##/tmp/x7UG_WciG3/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 2:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/_DnbIto0r2/index.bam.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/x7UG_WciG3/index.bam.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/_DnbIto0r2/index.bam.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/x7UG_WciG3/index.bam.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.bam + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.sam.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.sam.gz.bai /build/reproducible-path/htslib-1.21+ds/test/index_dos.sam > /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/_DnbIto0r2/index.sam.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -b /tmp/x7UG_WciG3/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -C -x /tmp/_DnbIto0r2/index.cram.crai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/_DnbIto0r2/index.cram + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -C -x /tmp/x7UG_WciG3/index.cram.crai /build/reproducible-path/htslib-1.21+ds/test/index.sam > /tmp/x7UG_WciG3/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index /tmp/_DnbIto0r2/index.cram + /build/reproducible-path/htslib-1.21+ds/test/test_index /tmp/x7UG_WciG3/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/_DnbIto0r2/index.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.bcf + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/x7UG_WciG3/index.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.bcf + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_DnbIto0r2/index.vcf.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/x7UG_WciG3/index.vcf.gz.csi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -c /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_DnbIto0r2/index.vcf.gz.tbi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/x7UG_WciG3/index.vcf.gz.tbi /build/reproducible-path/htslib-1.21+ds/test/index.vcf > /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_index -t /tmp/_DnbIto0r2/index.vcf.gz + /build/reproducible-path/htslib-1.21+ds/test/test_index -t /tmp/x7UG_WciG3/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/tabix /tmp/_DnbIto0r2/index.vcf.gz##idx##/tmp/_DnbIto0r2/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.21+ds/tabix /tmp/x7UG_WciG3/index.vcf.gz##idx##/tmp/x7UG_WciG3/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/_DnbIto0r2/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.21+ds/test/test_view /tmp/x7UG_WciG3/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2589,7 +2625,7 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.21+ds/test/test-vcf-api /tmp/_DnbIto0r2/test-vcf-api.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-vcf-api /tmp/x7UG_WciG3/test-vcf-api.bcf .. ok test_bcf2vcf: @@ -2597,7 +2633,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.21+ds/test/test-vcf-sweep /tmp/_DnbIto0r2/test-vcf-api.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-vcf-sweep /tmp/x7UG_WciG3/test-vcf-api.bcf .. ok test_vcf_various: @@ -2625,169 +2661,169 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 74452500 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 74452500 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 34270147 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 34270147 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 11108528 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 11108528 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 42233895 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 42233895 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 8111117 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 8111117 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 85644070 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 85644070 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 49879942 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 49879942 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 47881429 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 47881429 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 69081244 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 69081244 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/_DnbIto0r2 -s 83459376 + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr.pl -t /tmp/x7UG_WciG3 -s 83459376 .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/_DnbIto0r2/no_index_1.err + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/x7UG_WciG3/no_index_1.err .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/_DnbIto0r2/no_index_2.out 2> /tmp/_DnbIto0r2/no_index_2.err (expected fail) + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/x7UG_WciG3/no_index_2.out 2> /tmp/x7UG_WciG3/no_index_2.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/_DnbIto0r2/no_index_3.out 2> /tmp/_DnbIto0r2/no_index_3.err (expected fail) + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/x7UG_WciG3/no_index_3.out 2> /tmp/x7UG_WciG3/no_index_3.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/_DnbIto0r2/no_index_4.out 2> /tmp/_DnbIto0r2/no_index_4.err (expected fail) + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/x7UG_WciG3/no_index_4.out 2> /tmp/x7UG_WciG3/no_index_4.err (expected fail) .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test_view -b -p /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf -x /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/weird-chr-names.vcf + /build/reproducible-path/htslib-1.21+ds/test/test_view -b -p /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf -x /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.21+ds/test/bcf-sr/weird-chr-names.vcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_1.out.vcf -r '1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_1.out.vcf -r '1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_2.out.vcf -r '1:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_2.out.vcf -r '1:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_4.out.vcf -r '1:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_4.out.vcf -r '1:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_5.out.vcf -r '{1:1}' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_5.out.vcf -r '{1:1}' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set regions .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_14.out.vcf -t '1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_14.out.vcf -t '1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_15.out.vcf -t '1:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_15.out.vcf -t '1:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_17.out.vcf -t '1:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_17.out.vcf -t '1:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_18.out.vcf -t '{1:1}' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_18.out.vcf -t '{1:1}' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/_DnbIto0r2/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/_DnbIto0r2/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.21+ds/test/test-bcf-sr -O vcf -o /tmp/x7UG_WciG3/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/x7UG_WciG3/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set targets .. ok @@ -2797,15 +2833,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/_DnbIto0r2/headernul0.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/x7UG_WciG3/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/_DnbIto0r2/headernul1.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/x7UG_WciG3/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/_DnbIto0r2/headernul678.bam + /build/reproducible-path/htslib-1.21+ds/test/test_view -t ce.fa -C /tmp/x7UG_WciG3/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3364,7 +3400,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.21+ds' - rm -fr -- /tmp/dh-xdg-rundir-xdRzX0Y0 + rm -fr -- /tmp/dh-xdg-rundir-kMXZetwJ make[1]: Leaving directory '/build/reproducible-path/htslib-1.21+ds' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3393,8 +3429,8 @@ if test -n "/usr/lib/aarch64-linux-gnu/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so.1.21 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/aarch64-linux-gnu#g;s#@-PACKAGE_VERSION@#1.21#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc -ln -sf libhts.so.1.21 /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so chmod 644 /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc +ln -sf libhts.so.1.21 /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so ln -sf libhts.so.1.21 /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so.3 install -p annot-tsv bgzip htsfile tabix /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/reproducible-path/htslib-1.21+ds/debian/tmp/usr/lib/aarch64-linux-gnu/htslib; fi @@ -3468,15 +3504,15 @@ install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog - install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test - install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian - install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog + install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test + install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian + install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.21+ds' dh_installman install -m0755 -d debian/libhts3t64/usr/share/man/man7/ @@ -3493,17 +3529,17 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 + mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/sam.5 + mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 - mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 - chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 - mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 - man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 chmod 0644 -- debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 @@ -3531,14 +3567,14 @@ cd debian/libhts-dev cd debian/htslib-test cd debian/tabix - chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/build/reproducible-path/htslib-1.21+ds' cd '/build/reproducible-path/htslib-1.21+ds' cd '/build/reproducible-path/htslib-1.21+ds' @@ -3551,25 +3587,25 @@ find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev/usr/include debian/libhts-dev/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts3t64/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/include debian/libhts-dev/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.21+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log @@ -3594,23 +3630,18 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.21+ds' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b/e338a89b6e8f5ebd788bc1a6d06e3f46225c44.debug - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1/b69c45a040fc35a66237d334ed4e564569759a.debug + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b/e338a89b6e8f5ebd788bc1a6d06e3f46225c44.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1/b69c45a040fc35a66237d334ed4e564569759a.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1/b69c45a040fc35a66237d334ed4e564569759a.debug debian/tabix/usr/bin/tabix chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b/e338a89b6e8f5ebd788bc1a6d06e3f46225c44.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8b/e338a89b6e8f5ebd788bc1a6d06e3f46225c44.debug debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/65/16c115b13c61c205a8ef0dcfac9f91bd0307ed.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/65/16c115b13c61c205a8ef0dcfac9f91bd0307ed.debug @@ -3621,6 +3652,11 @@ chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c3/7d00eb3956a0e5006d4a7ab4bb30bea240f2c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c3/7d00eb3956a0e5006d4a7ab4bb30bea240f2c7.debug debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3e/a6d8265edc3f3712c28bce9e9457bff37643dd.debug debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/dd9cb39961d6d714b5d93f75d228d9e7281d48.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/dd9cb39961d6d714b5d93f75d228d9e7281d48.debug @@ -3628,14 +3664,14 @@ objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/dd9cb39961d6d714b5d93f75d228d9e7281d48.debug debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1/b69c45a040fc35a66237d334ed4e564569759a.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix rm -fr debian/libhts3t64/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3t64/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f1/b69c45a040fc35a66237d334ed4e564569759a.debug debian/tabix/usr/bin/tabix + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/87/8e54c2c1a2bb456da364987ce6d755a31573fa.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97/8afa7c25b84f34d6dd7f4598aac0ad15112fe6.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97/8afa7c25b84f34d6dd7f4598aac0ad15112fe6.debug @@ -3661,9 +3697,9 @@ rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip install -m0755 -d debian/libhts3t64/DEBIAN - dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so + dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/aarch64-linux-gnu/libhts.so.1.21 debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -3679,39 +3715,39 @@ install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol - install -m0755 -d debian/tabix/DEBIAN - echo misc:Depends= >> debian/tabix.substvars - echo misc:Pre-Depends= >> debian/tabix.substvars - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN - dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=878e54c2c1a2bb456da364987ce6d755a31573fa 978afa7c25b84f34d6dd7f4598aac0ad15112fe6 f1b69c45a040fc35a66237d334ed4e564569759a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libhts-dev/DEBIAN echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev + install -m0755 -d debian/htslib-test/DEBIAN + echo misc:Depends= >> debian/htslib-test.substvars + echo misc:Pre-Depends= >> debian/htslib-test.substvars + dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -cdebian/control -Pdebian/htslib-test install -m0755 -d debian/libhts3t64/DEBIAN echo misc:Depends= >> debian/libhts3t64.substvars echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=3ea6d8265edc3f3712c28bce9e9457bff37643dd 6516c115b13c61c205a8ef0dcfac9f91bd0307ed 82dd9cb39961d6d714b5d93f75d228d9e7281d48 8be338a89b6e8f5ebd788bc1a6d06e3f46225c44 c37d00eb3956a0e5006d4a7ab4bb30bea240f2c7" -DSection=debug -UReplaces -UBreaks - install -m0755 -d debian/htslib-test/DEBIAN - echo misc:Depends= >> debian/htslib-test.substvars - echo misc:Pre-Depends= >> debian/htslib-test.substvars - dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -cdebian/control -Pdebian/htslib-test - chmod 0644 -- debian/libhts-dev/DEBIAN/control + install -m0755 -d debian/tabix/DEBIAN + echo misc:Depends= >> debian/tabix.substvars + echo misc:Pre-Depends= >> debian/tabix.substvars + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=878e54c2c1a2bb456da364987ce6d755a31573fa 978afa7c25b84f34d6dd7f4598aac0ad15112fe6 f1b69c45a040fc35a66237d334ed4e564569759a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix - chmod 0644 -- debian/htslib-test/DEBIAN/control chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 - chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/htslib-test/DEBIAN/control + chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/libhts3t64/DEBIAN/control + chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums - install -m0755 -d debian/tabix/DEBIAN install -m0755 -d debian/libhts3t64/DEBIAN - install -m0755 -d debian/htslib-test/DEBIAN - cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN + install -m0755 -d debian/htslib-test/DEBIAN + install -m0755 -d debian/tabix/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums @@ -3729,14 +3765,14 @@ dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb --root-owner-group --build debian/htslib-test .. + dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. -dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.21+ds-1_arm64.deb'. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.21+ds-1_arm64.deb'. +dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.21+ds-1_arm64.deb'. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.21+ds-1_arm64.deb'. dpkg-deb: building package 'htslib-test' in '../htslib-test_1.21+ds-1_all.deb'. -dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.21+ds-1_arm64.deb'. - dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.21+ds-1_arm64.deb'. +dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.21+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../htslib_1.21+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../htslib_1.21+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3745,12 +3781,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1394243/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3982520 and its subdirectories -I: Current time: Fri Feb 7 00:21:16 -12 2025 -I: pbuilder-time-stamp: 1738930876 +I: removing directory /srv/workspace/pbuilder/1394243 and its subdirectories +I: Current time: Fri Mar 13 08:46:37 +14 2026 +I: pbuilder-time-stamp: 1773341197