Diff of the two buildlogs: -- --- b1/build.log 2025-02-17 18:30:31.982649407 +0000 +++ b2/build.log 2025-02-17 18:37:16.160598276 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Feb 17 06:26:22 -12 2025 -I: pbuilder-time-stamp: 1739816782 +I: Current time: Mon Mar 23 14:54:06 +14 2026 +I: pbuilder-time-stamp: 1774227246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -39,52 +39,84 @@ dpkg-source: info: applying waiting_launcher.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1606585/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 23 00:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='0ea3bd028bb845da92bdcd3227b62d3d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1606585' - PS1='# ' - PS2='> ' + INVOCATION_ID=d0f6c0c5832d44a5a9e94c89bfa96532 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=197300 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.T2RUGkAp/pbuilderrc_IMF3 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.T2RUGkAp/b1 --logfile b1/build.log jalview_2.11.4.1+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.T2RUGkAp/pbuilderrc_294I --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.T2RUGkAp/b2 --logfile b2/build.log jalview_2.11.4.1+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1606585/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -666,7 +698,7 @@ Get: 470 http://deb.debian.org/debian unstable/main arm64 libmockito-java all 3.3.0-2 [510 kB] Get: 471 http://deb.debian.org/debian unstable/main arm64 libvamsas-client-java all 0.2+dfsg-2 [584 kB] Get: 472 http://deb.debian.org/debian unstable/main arm64 varna all 3-93+ds-7 [801 kB] -Fetched 394 MB in 3s (130 MB/s) +Fetched 394 MB in 1s (269 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19918 files and directories currently installed.) @@ -2212,8 +2244,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Feb 17 18:27:43 UTC 2025. -Universal Time is now: Mon Feb 17 18:27:43 UTC 2025. +Local time is now: Mon Mar 23 00:55:11 UTC 2026. +Universal Time is now: Mon Mar 23 00:55:11 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -2813,7 +2845,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/jalview-2.11.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../jalview_2.11.4.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/jalview-2.11.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../jalview_2.11.4.1+dfsg-1_source.changes dpkg-buildpackage: info: source package jalview dpkg-buildpackage: info: source version 2.11.4.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2870,18 +2906,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.523 secs. -The client will now receive all logging from the daemon (pid: 1643008). The daemon log file: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1/daemon-1643008.out.log +An attempt to start the daemon took 3.521 secs. +The client will now receive all logging from the daemon (pid: 243548). The daemon log file: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1/daemon-243548.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@708ab4bc -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@708ab4bc -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4090fff0 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c8e27f6 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c8e27f6 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c0e7ac4 Starting Build Compiling initialization script '/build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@32f70459 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5f5ba641 Compiling initialization script '/build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.4.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.4.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2908,37 +2944,37 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c4aea2c +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@17994c9b Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4090fff0 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4a67dc4b -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@c17ec3b +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c0e7ac4 +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@efe6fed +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@c845b78 :copyHelp (Thread[#59,Task worker for ':',5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Up-to-date check for task ':copyHelp' took 0.526 secs. It is not up-to-date because: +Up-to-date check for task ':copyHelp' took 0.601 secs. It is not up-to-date because: No history is available. -:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 1.708 secs. +:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 1.541 secs. :buildIndices (Thread[#59,Task worker for ':',5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.122 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.235 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.4.1+dfsg/classes:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 2.266 secs. +:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 2.809 secs. :copyResources (Thread[#59,Task worker for ':',5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Up-to-date check for task ':copyResources' took 0.05 secs. It is not up-to-date because: +Up-to-date check for task ':copyResources' took 0.078 secs. It is not up-to-date because: No history is available. -:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.164 secs. +:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.183 secs. :copyChannelResources (Thread[#59,Task worker for ':',5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Up-to-date check for task ':copyChannelResources' took 0.029 secs. It is not up-to-date because: +Up-to-date check for task ':copyChannelResources' took 0.019 secs. It is not up-to-date because: No history is available. -:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.087 secs. +:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.067 secs. :createBuildProperties (Thread[#59,Task worker for ':',5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. @@ -2946,7 +2982,7 @@ Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.369 secs. +:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.337 secs. :buildResources (Thread[#59,Task worker for ':',5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. @@ -2954,9 +2990,9 @@ :copyDocs (Thread[#59,Task worker for ':',5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Up-to-date check for task ':copyDocs' took 0.027 secs. It is not up-to-date because: +Up-to-date check for task ':copyDocs' took 0.029 secs. It is not up-to-date because: No history is available. -:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.141 secs. +:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.159 secs. :convertMdFiles (Thread[#59,Task worker for ':',5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. @@ -2974,7 +3010,7 @@ Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 2.487 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 2.934 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileJava'. @@ -3027,13 +3063,13 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 24.751 secs. +:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 34.53 secs. :processResources (Thread[#59,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.044 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.22 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.3 secs. +:processResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.551 secs. :classes (Thread[#59,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. @@ -3041,18 +3077,18 @@ :debianMavenPom (Thread[#59,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.002 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.008 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/jalview-2.11.4.1+dfsg/build/debian/jalview.pom -:debianMavenPom (Thread[#59,Task worker for ':',5,main]) completed. Took 0.084 secs. +:debianMavenPom (Thread[#59,Task worker for ':',5,main]) completed. Took 0.178 secs. :jar (Thread[#59,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.083 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.176 secs. It is not up-to-date because: No history is available. -:jar (Thread[#59,Task worker for ':',5,main]) completed. Took 0.952 secs. +:jar (Thread[#59,Task worker for ':',5,main]) completed. Took 1.426 secs. -BUILD SUCCESSFUL in 48s +BUILD SUCCESSFUL in 1m 2s 10 actionable tasks: 10 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/jalview-2.11.4.1+dfsg' @@ -3074,17 +3110,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.402 secs. -The client will now receive all logging from the daemon (pid: 1646144). The daemon log file: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1/daemon-1646144.out.log +An attempt to start the daemon took 2.747 secs. +The client will now receive all logging from the daemon (pid: 246796). The daemon log file: /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/daemon/4.4.1/daemon-246796.out.log +Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Daemon will be stopped at the end of the build stopping after processing Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@186251a4 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@186251a4 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@d4774b7 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@59120a7 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@59120a7 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@65477aaf Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@19cb7326 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d2b93da Settings evaluated using settings file '/build/reproducible-path/jalview-2.11.4.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/jalview-2.11.4.1+dfsg/build.gradle'. Included projects: [root project 'jalview'] @@ -3104,47 +3140,47 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@ad9a0ad +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@714c787 Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':testTask0', task ':testTask1', task ':testTask2', task ':testTask3', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@d4774b7 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e0ea153 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@159b4a8f +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@65477aaf +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@368ce30c +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@47e863cd :copyHelp (Thread[#59,Task worker for ':',5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Skipping task ':copyHelp' as it is up-to-date (took 0.361 secs). +Skipping task ':copyHelp' as it is up-to-date (took 0.562 secs). :copyHelp UP-TO-DATE -:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 0.417 secs. +:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 0.597 secs. :buildIndices (Thread[#59,Task worker for ':',5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.545 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 1.245 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/Jmol.jar has been removed. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/apache-mime4j-core.jar has been removed. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.4.1+dfsg/classes:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/testng.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/mockito-core.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/junit4.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jcommander.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jaxb-impl.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/guava.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.4.1+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 1.818 secs. +:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 3.663 secs. :copyResources (Thread[#59,Task worker for ':',5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Skipping task ':copyResources' as it is up-to-date (took 0.032 secs). +Skipping task ':copyResources' as it is up-to-date (took 0.063 secs). :copyResources UP-TO-DATE -:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.035 secs. +:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.066 secs. :copyChannelResources (Thread[#59,Task worker for ':',5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Skipping task ':copyChannelResources' as it is up-to-date (took 0.006 secs). +Skipping task ':copyChannelResources' as it is up-to-date (took 0.02 secs). :copyChannelResources UP-TO-DATE -:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.008 secs. +:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.022 secs. :createBuildProperties (Thread[#59,Task worker for ':',5,main]) started. :createBuildProperties -Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. +Putting task artifact state for task ':createBuildProperties' into context took 0.007 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.168 secs. +:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.424 secs. :buildResources (Thread[#59,Task worker for ':',5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. @@ -3152,9 +3188,9 @@ :copyDocs (Thread[#59,Task worker for ':',5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Skipping task ':copyDocs' as it is up-to-date (took 0.024 secs). +Skipping task ':copyDocs' as it is up-to-date (took 0.032 secs). :copyDocs UP-TO-DATE -:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.027 secs. +:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.036 secs. :convertMdFiles (Thread[#59,Task worker for ':',5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. @@ -3174,7 +3210,7 @@ Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 2.514 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 3.504 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/classes/com/stevesoft/pat/AmpersandRule.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.1+dfsg/classes/com/stevesoft/pat/Any.class has been added. @@ -3228,13 +3264,13 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 23.069 secs. +:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 41.092 secs. :compileTestJava (Thread[#59,Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/test/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.1+dfsg/src/test/java', not found -Up-to-date check for task ':compileTestJava' took 0.09 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.795 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileTestJava'. @@ -3244,96 +3280,96 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#59,Task worker for ':',5,main]) completed. Took 4.964 secs. +:compileTestJava (Thread[#59,Task worker for ':',5,main]) completed. Took 10.976 secs. :processTestResources (Thread[#59,Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.055 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.147 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.437 secs. +:processTestResources (Thread[#59,Task worker for ':',5,main]) completed. Took 1.653 secs. :testClasses (Thread[#59,Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:testClasses (Thread[#59,Task worker for ':',5,main]) completed. Took 0.018 secs. :testTask0 (Thread[#59,Task worker for ':',5,main]) started. :testTask0 Putting task artifact state for task ':testTask0' into context took 0.0 secs. -Up-to-date check for task ':testTask0' took 0.116 secs. It is not up-to-date because: +Up-to-date check for task ':testTask0' took 0.213 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath4652588953598153249txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath10105891922558170803txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.11 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask0 +Finished generating test XML results (0.168 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask0 Generating HTML test report... -Finished generating test html results (0.088 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0 -:testTask0 (Thread[#59,Task worker for ':',5,main]) completed. Took 6.258 secs. +Finished generating test html results (0.209 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0 +:testTask0 (Thread[#59,Task worker for ':',5,main]) completed. Took 17.364 secs. :testTask1 (Thread[#59,Task worker for ':',5,main]) started. :testTask1 Putting task artifact state for task ':testTask1' into context took 0.0 secs. -Up-to-date check for task ':testTask1' took 0.009 secs. It is not up-to-date because: +Up-to-date check for task ':testTask1' took 0.027 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12694974023159945321txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath8872005309679146494txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 2 started executing tests. Gradle Test Executor 2 finished executing tests. -Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask1 +Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask1 Generating HTML test report... -Finished generating test html results (0.009 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1 +Finished generating test html results (0.008 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1/index.html -:testTask1 (Thread[#59,Task worker for ':',5,main]) completed. Took 2.172 secs. +:testTask1 (Thread[#59,Task worker for ':',5,main]) completed. Took 4.205 secs. :testTask2 (Thread[#59,Task worker for ':',5,main]) started. :testTask2 Putting task artifact state for task ':testTask2' into context took 0.0 secs. -Up-to-date check for task ':testTask2' took 0.013 secs. It is not up-to-date because: +Up-to-date check for task ':testTask2' took 0.023 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath8343661389593230239txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath724379361918600673txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 3' Gradle Test Executor 3 started executing tests. Gradle Test Executor 3 finished executing tests. -Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask2 +Finished generating test XML results (0.0 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask2 Generating HTML test report... Finished generating test html results (0.003 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2/index.html -:testTask2 (Thread[#59,Task worker for ':',5,main]) completed. Took 2.086 secs. +:testTask2 (Thread[#59,Task worker for ':',5,main]) completed. Took 4.242 secs. :testTask3 (Thread[#59,Task worker for ':',5,main]) started. :testTask3 Putting task artifact state for task ':testTask3' into context took 0.0 secs. -Up-to-date check for task ':testTask3' took 0.009 secs. It is not up-to-date because: +Up-to-date check for task ':testTask3' took 0.018 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath6374090413536425083txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.4.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath6798525204830536347txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 4' Gradle Test Executor 4 started executing tests. Gradle Test Executor 4 finished executing tests. Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/test-results/testTask3 Generating HTML test report... -Finished generating test html results (0.005 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3 +Finished generating test html results (0.006 secs) into: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3/index.html -:testTask3 (Thread[#59,Task worker for ':',5,main]) completed. Took 1.916 secs. +:testTask3 (Thread[#59,Task worker for ':',5,main]) completed. Took 4.135 secs. :test (Thread[#59,Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#59,Task worker for ':',5,main]) completed. Took 0.002 secs. +:test (Thread[#59,Task worker for ':',5,main]) completed. Took 0.001 secs. -BUILD SUCCESSFUL in 51s +BUILD SUCCESSFUL in 1m 44s 13 actionable tasks: 9 executed, 4 up-to-date -┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 4.202 seconds│ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 2.079 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.999 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.838 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 10.118 seconds │ -└─────────────────────────────────────────────────────────────────────────────────────────────────────┘ +┌──────────────────────────────────────────────────────────────────────────────────────────────────────┐ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 11.969 seconds│ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 4.029 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 4.077 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.964 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 24.039 seconds │ +└──────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3433,23 +3469,23 @@ * Get more help at https://help.gradle.org -BUILD FAILED in 51s +BUILD FAILED in 1m 45s 13 actionable tasks: 9 executed, 4 up-to-date -┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 4.202 seconds│ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 2.079 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.999 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.838 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3/index.html │ -├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 10.118 seconds │ -└─────────────────────────────────────────────────────────────────────────────────────────────────────┘ +┌──────────────────────────────────────────────────────────────────────────────────────────────────────┐ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 11.969 seconds│ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask0/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 4.029 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask1/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 4.077 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask2/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.964 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.4.1+dfsg/build/reports/tests/testTask3/index.html │ +├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 24.039 seconds │ +└──────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3545,7 +3581,7 @@ * Get more help at https://help.gradle.org -BUILD FAILED in 51s +BUILD FAILED in 1m 45s dh_auto_test: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jalview -Dfile.encoding=UTF-8 --parallel --max-workers=12 test returned exit code 1 echo "------------------------------" ------------------------------ @@ -3598,12 +3634,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/197300/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1606585 and its subdirectories -I: Current time: Mon Feb 17 06:30:30 -12 2025 -I: pbuilder-time-stamp: 1739817030 +I: removing directory /srv/workspace/pbuilder/197300 and its subdirectories +I: Current time: Mon Mar 23 15:00:15 +14 2026 +I: pbuilder-time-stamp: 1774227615