Diff of the two buildlogs: -- --- b1/build.log 2025-01-29 23:21:41.591431310 +0000 +++ b2/build.log 2025-01-29 23:27:18.932168742 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jan 29 11:11:35 -12 2025 -I: pbuilder-time-stamp: 1738192295 +I: Current time: Wed Mar 4 19:44:44 +14 2026 +I: pbuilder-time-stamp: 1772603084 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking libcifpp_7.0.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/438861/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 4 05:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f9644e6aae4d4ff380c5b8b35b573fde' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='438861' - PS1='# ' - PS2='> ' + INVOCATION_ID=392809080e4445d1833cf2f721c26e84 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3745332 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rX4Mauxz/pbuilderrc_XpOi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rX4Mauxz/b1 --logfile b1/build.log libcifpp_7.0.9-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rX4Mauxz/pbuilderrc_XzOO --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rX4Mauxz/b2 --logfile b2/build.log libcifpp_7.0.9-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/438861/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -342,7 +374,7 @@ Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 160 MB in 1s (130 MB/s) +Fetched 160 MB in 1s (233 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19957 files and directories currently installed.) @@ -1053,8 +1085,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jan 29 23:13:02 UTC 2025. -Universal Time is now: Wed Jan 29 23:13:02 UTC 2025. +Local time is now: Wed Mar 4 05:45:26 UTC 2026. +Universal Time is now: Wed Mar 4 05:45:26 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1251,7 +1283,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libcifpp-7.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.9-1_source.changes +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libcifpp-7.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.9-1_source.changes dpkg-buildpackage: info: source package libcifpp dpkg-buildpackage: info: source version 7.0.9-1 dpkg-buildpackage: info: source distribution unstable @@ -1309,7 +1345,7 @@ -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build --- Configuring done (29.2s) +-- Configuring done (13.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1343,10 +1379,10 @@ make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/CMakeFiles/Sphinx-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build +make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build +make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build @@ -1354,31 +1390,30 @@ [ 2%] Generating xml cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml [ 4%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/category.cpp -[ 9%] Generating xml -[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o +[ 6%] Generating xml cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml -[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o +[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o +[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/category.cpp /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/condition.cpp [ 13%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/datablock.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/dictionary_parser.cpp [ 15%] Generating docs cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/datablock.cpp +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/dictionary_parser.cpp [ 18%] Generating docs cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile [ 20%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/file.cpp -[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o [ 22%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o -[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/file.cpp +[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/item.cpp +[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/parser.cpp -[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/row.cpp.o -MF CMakeFiles/cifpp.dir/src/row.cpp.o.d -o CMakeFiles/cifpp.dir/src/row.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/row.cpp +[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/validate.cpp [ 31%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/text.cpp Doxygen version used: 1.9.8 Searching for include files... Searching for example files... @@ -1435,7 +1470,8 @@ Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/io.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.Doxygen version used: 1.9.8 +Preprocessing /build/reproducible-path/libcifpp-7.0./usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/text.cpp +Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... @@ -1589,7 +1625,206 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c9/include/cif++/pdb/tls.hpp... +Generating code for file c/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:273: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:291: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:326: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. +if++/point.hpp... +Generating code for file cif++/row.hpp... +Generating code for file cif++/symmetry.hpp... +Generating code for file cif++/text.hpp... +Generating code for file cif++/utilities.hpp... +Generating code for file cif++/validate.hpp... +Generating file documentation... +Generating docs for file cif++/atom_type.hpp... +Generating docs for file cif++/category.hpp... +Generating docs for file cif++/compound.hpp... +Generating docs for file cif++/condition.hpp... +Generating docs for file cif++/datablock.hpp... +Generating docs for file cif++/file.hpp... +Generating docs for file cif++/format.hpp... +Generating docs for file cif++/forward_decl.hpp... +Generating docs for file cif++/gzio.hpp... +Generating docs for file cif++/item.hpp... +Generating docs for file cif++/iterator.hpp... +Generating docs for file cif++/matrix.hpp... +Generating docs for file cif++/model.hpp... +Generating docs for file cif++/parser.hpp... +Generating docs for file cif++/pdb.hpp... +Generating docs for file cif++/pdb/cif2pdb.hpp... +Generating docs for file cif++/pdb/io.hpp... +Generating docs for file cif++/pdb/pdb2cif.hpp... +Generating docs for file cif++/pdb/tls.hpp... +Generating docs for file cif++/point.hpp... +Generating docs for file cif++/row.hpp... +Generating docs for file cif++/symmetry.hpp... +Generating docs for file cif++/text.hpp... +Generating docs for file cif++/utilities.hpp... +Generating docs for file cif++/validate.hpp... +Generating page documentation... +Generating docs for page deprecated... +Generating group documentation... +Generating class documentation... +Generating concept documentation... +Generating module documentation... +Generating namespace documentation... +Generating docs for namespace cif +Generating docs for compound cif::atom_type_info... +Generating docs for compound cif::atom_type_traits... +Generating docs for nested compound cif::atom_type_traits::SFData... +Generating docs for compound cif::category... +Generating docs for compound cif::category_validator... +Generating docs for compound cif::cell... +Generating docs for compound cif::compound... +Generating docs for compound cif::compound_atom... +Generating docs for compound cif::compound_bond... +Generating docs for compound cif::compound_factory... +Generating docs for compound cif::compound_source... +Generating docs for compound cif::condition... +Generating docs for compound cif::conditional_iterator_proxy... +Generating docs for compound cif::crystal... +Generating docs for compound cif::datablock... +Generating docs for compound cif::duplicate_key_error... +Generating docs for compound cif::empty_type... +Generating docs for compound cif::file... +Generating docs for compound cif::fill_out_streambuf... +Generating docs for compound cif::identity_matrix... +Generating docs for compound cif::iless... +Generating docs for compound cif::item... +Generating docs for compound cif::item_alias... +Generating docs for compound cif::item_handle... +Generating docs for compound cif::item_validator... +Generating docs for compound cif::item_value... +Generating docs for compound cif::iterator_impl... +Generating docs for compound cif::iterator_impl< Category >... +Generating docs for compound cif::iterator_impl< Category, T >... +Generating docs for compound cif::iterator_proxy... +Generating docs for compound cif::key... +Generating docs for compound cif::link_validator... +Generating docs for compound cif::matrix... +Generating docs for compound cif::matrix_cofactors... +Generating docs for compound cif::matrix_expression... +Generating docs for compound cif::matrix_fixed... +Generating docs for compound cif::matrix_matrix_multiplication... +Generating docs for compound cif::matrix_scalar_multiplication... +Generating docs for compound cif::matrix_subtraction... +Generating docs for compound cif::missing_key_error... +Generating docs for compound cif::multiple_results_error... +Generating docs for compound cif::my_charconv... +Generating docs for compound cif::parse_error... +Generating docs for compound cif::parser... +Generating docs for compound cif::point_type... +Generating docs for compound cif::progress_bar... +G/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +enerating docs for compound cif::quaternion_type... +Generating docs for compound cif::row... +Generating docs for compound cif::row_handle... +Generating docs for compound cif::row_initializer... +Generating docs for compound cif::sac_parser... +Generating docs for compound cif::space_group... +Generating docs for compound cif::spacegroup... +Generating docs for compound cif::spherical_dots... +Generating docs for compound cif::sym_op... +Generating docs for compound cif::symmetric_matrix... +Generating docs for compound cif::symmetric_matrix_fixed... +Generating docs for compound cif::symop_data... +Generating docs for compound cif::symop_datablock... +Generating docs for compound cif::transformation... +Generating docs for compound cif::type_validator... +Generating docs for compound cif::validation_category_impl... +Generating docs for compound cif::validation_exception... +Generating docs for compound cif::validator... +Generating docs for compound cif::validator_factory... +Generating docs for concept cif::Numeric... +Generating docs for compound cif::colour::detail::coloured_string_t... +Generating docs for compound cif::gzio::basic_ifstream... +Generating docs for compound cif::gzio::basic_igzip_streambuf... +Generating docs for compound cif::gzio::basic_istream... +Generating docs for compound cif::gzio::basic_ofstream... +Generating docs for compound cif::gzio::basic_ogzip_streambuf... +Generating docs for compound cif::gzio::basic_ostream... +Generating docs for compound cif::gzio::basic_streambuf... +Generating docs for compound cif::mm::atom... +Generating docs for compound cif::mm::branch... +Generating docs for compound cif::mm::monomer... +Generating docs for compound cif::mm::polymer... +Generating docs for compound cif::mm::residue... +Generating docs for compound cif::mm::structure... +Generating docs for compound cif::mm::sugar... +Generating graph info page... +Generating directory documentation... +Generating dependency graph for directory cif++/pdb +finalizing index lists... +writing tag file... +Generating XML output... +Generating XML output for class cif::mm::atom +Generating XML output for class cif::atom_type_info +Generating XML output for class cif::atom_type_traits +Generating XML output for class cif::gzio::basic_ifstream +Generating XML output for class cif::gzio::basic_igzip_streambuf +Generating XML output for class cif::gzio::basic_istream +Generating XML output for class cif::gzio::basic_ofstream +Generating XML output for class cif::gzio::basic_ogzip_streambuf +Generating XML output for class cif::gzio::basic_ostream +Generating XML output for class cif::gzio::basic_streambuf +Generating XML output for class cif::mm::branch +Generating XML output for class cif::category +Generating XML output for class cif::category_validator +Generating XML output for class cif::cell +Generating XML output for class cif::colour::detail::coloured_string_t +Generating XML output for class cif::compound +Generating XML output for class cif::compound_atom +Generating XML output for class cif::compound_bond +Generating XML output for class cif::compound_factory +Generating XML output for class cif::compound_source +Generating XML output for class cif::condition +Generating XML output for class cif::conditional_iterator_proxy +Generating XML output for class cif::crystal +Generating XML output for class cif::datablock +Generating XML output for class cif::duplicate_key_error +Generating XML output for class cif::empty_type +Generating XML output for class cif::file +Generating XML output for class cif::fill_out_streambuf +Generating XML output for class cif::identity_matrix +Generating XML output for class cif::iless +Generating XML output for class cif::item +Generating XML output for class cif::item_alias +Generating XML output for class cif::category::item_entry +Generating XML output for class cif::item_handle +Generating XML output for class cif::item_validator +Generating XML output for class cif::item_value +Generating XML output for class cif::iterator_impl +Generating XML output for class cif::iterator_impl< Category > +Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +9/include/cif++/pdb/tls.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/tls.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.9/include/cif++/point.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/point.hpp... @@ -1685,121 +1920,115 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +Generating code for file ctegory, T > +Generating XML output for class cif::iterator_proxy +Generating XML output for class cif::key +Generating XML output for class cif::category::link +Generating XML output for class cif::link_validator +Generating XML output for class cif::matrix +Generating XML output for class cif::matrix_cofactors +Generating XML output for class cif::matrix_expression +Generating XML output for class cif::matrix_fixed +Generating XML output for class cif::matrix_matrix_multiplication +Generating XML output for class cif::matrix_scalar_multiplication +Generating XML output for class cif::matrix_subtraction +Generating XML output for class cif::missing_key_error +Generating XML output for class cif::mm::monomer +Generating XML output for class cif::multiple_results_error +Generating XML output for class cif::my_charconv +Generating XML output for class cif::parse_error +Generating XML output for class cif::parser +Generating XML output for class cif::point_type +Generating XML output for class cif::mm::polymer +Generating XML output for class cif::progress_bar +Generating XML output for class cif::quaternion_type +Generating XML output for class cif::mm::residue +Generating XML output for class cif::row +Generating XML output for class cif::row_handle +Generating XML output for class cif::row_initializer +Generating XML output for class cif::sac_parser +Generating XML output for class cif::atom_type_traits::SFData +Generating XML output for class cif::space_group +Generating XML output for class cif::spacegroup +Generating XML output for class cif::spherical_dots +Generating XML output for class cif::mm::structure +Generating XML output for class cif::mm::sugar +Generating XML output for class cif::sym_op +Generating XML output for class cif::symmetric_matrix +Generating XML output for class cif::symmetric_matrix_fixed +Generating XML output for class cif::symop_data +Generating XML output for class cif::symop_datablock +Generating XML output for class cif::transformation +Generating XML output for class cif::type_validator +Generating XML output for class cif::validation_category_impl +Generating XML output for class cif::validation_exception +Generating XML output for class cif::validator +Generating XML output for class cif::validator_factory +Generating XML output for concept cif::Numeric +Generating XML output for namespace cif +Generating XML output for namespace cif::colour +Generating XML output for namespace cif::colour::detail +Generating XML output for namespace cif::detail +Generating XML output for namespace cif::gzio +Generating XML output for namespace cif::literals +Generating XML output for namespace cif::mm +Generating XML output for namespace cif::pdb +Generating XML output for namespace std +Generating XML output for namespace std_experimental +Generating XML output for namespace std_experimental::detail +Generating XML output for file cif++.hpp +Generating XML output for file atom_type.hpp +Generating XML output for file category.hpp +Generating XML output for file compound.hpp +Generating XML output for file condition.hpp +Generating XML output for file datablock.hpp +Generating XML output for file dictionary_parser.hpp +Generating XML output for file exports.hpp +Generating XML output for file file.hpp +Generating XML output for file format.hpp +Generating XML output for file forward_decl.hpp +Generating XML output for file gzio.hpp +Generating XML output for file item.hpp +Generating XML output for file iterator.hpp +Generating XML output for file matrix.hpp +Generating XML output for file model.hpp +Generating XML output for file parser.hpp +Generating XML output for file pdb.hpp +Generating XML output for file cif2pdb.hpp +Generating XML output for file io.hpp +Generating XML output for file pdb2cif.hpp +Generating XML output for file tls.hpp +Generating XML output for file point.hpp +Generating XML output for file row.hpp +Generating XML output for file symmetry.hpp +Generating XML output for file text.hpp +Generating XML output for file utilities.hpp +Generating XML output for file validate.hpp +Generating XML output for page deprecated +Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/ +Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/ +Running plantuml with JAVA... +Running dot... +type lookup cache used 4697/65536 hits=49311 misses=4943 +symbol lookup cache used 5043/65536 hits=61869 misses=5043 +finished... +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +[ 31%] Built target Doxygen-libcifpp /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:273: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:291: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:326: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:273: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:291: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:326: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. -if++/point.hpp... -Generating code for file cif++/row.hpp... -Generating code for file cif++/symmetry.hpp... -Generating code for file cif++/text.hpp... -Generating code for file cif++/utilities.hpp... -Generating code for file cif++/validate.hpp... -Generating file documentation... -Generating docs for file cif++/atom_type.hpp... -Generating docs for file cif++/category.hpp... -Generating docs for file cif++/compound.hpp... -Generating docs for file cif++/condition.hpp... -Generating docs for file cif++/datablock.hpp... -Generating docs for file cif++/file.hpp... -Generating docs for file cif++/format.hpp... -Generating docs for file cif++/forward_decl.hpp... -Generating docs for file cif++/gzio.hpp... -Generating docs for file cif++/item.hpp... -Generating docs for file cif++/iterator.hpp... -Generating docs for file cif++/matrix.hpp... -Generating docs for file cif++/model.hpp... -Generating docs for file cif++/parser.hpp... -Generating docs for file cif++/pdb.hpp... -Generating docs for file cif++/pdb/cif2pdb.hpp... -Generating docs for file cif++/pdb/io.hpp... -Generating docs for file cif++/pdb/pdb2cif.hpp... -Generating docs for file cif++/pdb/tls.hpp... -Generating docs for file cif++/point.hpp... -Generating docs for file cif++/row.hpp... -Generating docs for file cif++/symmetry.hpp... -Generating docs for file cif++/text.hpp... -Generating docs for file cif++/utilities.hpp... -Generating docs for file cif++/validate.hpp... -Generating page documentation... -Generating docs for page deprecated... -Generating group documentation... -Generating class documentation... -Generating concept documentation... -Generating module documentation... -Generating namespace documentation... -Generating docs for namespace cif -Generating docs for compound cif::atom_type_info... -Generating docs for compound cif::atom_type_traits... -Generating docs for nested compound cif::atom_type_traits::SFData... -Generating docs for compound cif::category... -Generating docs for compound cif::category_validator... -Generating docs for compound cif::cell... -Generating docs for compound cif::compound... -Generating docs for compound cif::compound_atom... -Generating docs for compound cif::compound_bond... -Generating docs for compound cif::compound_factory... -Generating docs for compound cif::compound_source... -Generating docs for compound cif::condition... -Generating docs for compound cif::conditional_iterator_proxy... -Generating docs for compound cif::crystal... -Generating docs for compound cif::datablock... -Generating docs for compound cif::duplicate_key_error... -Generating docs for compound cif::empty_type... -Generating docs for compound cif::file... -Generating docs for compound cif::fill_out_streambuf... -Generating docs for compound cif::identity_matrix... -Generating docs for compound cif::iless... -Generating docs for compound cif::item... -Generating docs for compound cif::item_alias... -Generating docs for compound cif::item_handle... -Generating docs for compound cif::item_validator... -Generating docs for compound cif::item_value... -Generating docs for compound cif::iterator_impl... -Generating docs for compound cif::iterator_impl< Category >... -Generating docs for compound cif::iterator_impl< Category, T >... -Generating docs for compound cif::iterator_proxy... -Generating docs for compound cif::key... -Generating docs for compound cif::link_validator... -Generating docs for compound cif::matrix... -Generating docs for compound cif::matrix_cofactors... -Generating docs for compound cif::matrix_expression... -Generating docs for compound cif::matrix_fixed... -Generating docs for compound cif::matrix_matrix_multiplication... -Generating docs for compound cif::matrix_scalar_multiplication... -Generating docs for compound cif::matrix_subtraction... -Generating docs for compound cif::missing_key_error... -Generating docs for compound cif::multiple_results_error... -Generating docs for compound cif::my_charconv... -Generating docs for compound cif::parse_error... -Generating docs for compound cif::parser... -Generating docs for compound cif::point_type... -Generating docs for compound cif::progress_bar... -G/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/utilities.cpp +/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. @@ -1895,12 +2124,6 @@ /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. enerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... @@ -1980,85 +2203,6 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Caenerating docs for compound cif::quaternion_type... -Generating docs for compound cif::row... -Generating docs for compound cif::row_handle... -Generating docs for compound cif::row_initializer... -Generating docs for compound cif::sac_parser... -Generating docs for compound cif::space_group... -Generating docs for compound cif::spacegroup... -Generating docs for compound cif::spherical_dots... -Generating docs for compound cif::sym_op... -Generating docs for compound cif::symmetric_matrix... -Generating docs for compound cif::symmetric_matrix_fixed... -Generating docs for compound cif::symop_data... -Generating docs for compound cif::symop_datablock... -Generating docs for compound cif::transformation... -Generating docs for compound cif::type_validator... -Generating docs for compound cif::validation_category_impl... -Generating docs for compound cif::validation_exception... -Generating docs for compound cif::validator... -Generating docs for compound cif::validator_factory... -Generating docs for concept cif::Numeric... -Generating docs for compound cif::colour::detail::coloured_string_t... -Generating docs for compound cif::gzio::basic_ifstream... -Generating docs for compound cif::gzio::basic_igzip_streambuf... -Generating docs for compound cif::gzio::basic_istream... -Generating docs for compound cif::gzio::basic_ofstream... -Generating docs for compound cif::gzio::basic_ogzip_streambuf... -Generating docs for compound cif::gzio::basic_ostream... -Generating docs for compound cif::gzio::basic_streambuf... -Generating docs for compound cif::mm::atom... -Generating docs for compound cif::mm::branch... -Generating docs for compound cif::mm::monomer... -Generating docs for compound cif::mm::polymer... -Generating docs for compound cif::mm::residue... -Generating docs for compound cif::mm::structure... -Generating docs for compound cif::mm::sugar... -Generating graph info page... -Generating directory documentation... -Generating dependency graph for directory cif++/pdb -finalizing index lists... -writing tag file... -Generating XML output... -Generating XML output for class cif::mm::atom -Generating XML output for class cif::atom_type_info -Generating XML output for class cif::atom_type_traits -Generating XML output for class cif::gzio::basic_ifstream -Generating XML output for class cif::gzio::basic_igzip_streambuf -Generating XML output for class cif::gzio::basic_istream -Generating XML output for class cif::gzio::basic_ofstream -Generating XML output for class cif::gzio::basic_ogzip_streambuf -Generating XML output for class cif::gzio::basic_ostream -Generating XML output for class cif::gzio::basic_streambuf -Generating XML output for class cif::mm::branch -Generating XML output for class cif::category -Generating XML output for class cif::category_validator -Generating XML output for class cif::cell -Generating XML output for class cif::colour::detail::coloured_string_t -Generating XML output for class cif::compound -Generating XML output for class cif::compound_atom -Generating XML output for class cif::compound_bond -Generating XML output for class cif::compound_factory -Generating XML output for class cif::compound_source -Generating XML output for class cif::condition -Generating XML output for class cif::conditional_iterator_proxy -Generating XML output for class cif::crystal -Generating XML output for class cif::datablock -Generating XML output for class cif::duplicate_key_error -Generating XML output for class cif::empty_type -Generating XML output for class cif::file -Generating XML output for class cif::fill_out_streambuf -Generating XML output for class cif::identity_matrix -Generating XML output for class cif::iless -Generating XML output for class cif::item -Generating XML output for class cif::item_alias -Generating XML output for class cif::category::item_entry -Generating XML output for class cif::item_handle -Generating XML output for class cif::item_validator -Generating XML output for class cif::item_value -Generating XML output for class cif::iterator_impl -Generating XML output for class cif::iterator_impl< Category > Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: parameter 'pdbx_file' @@ -2071,110 +2215,6 @@ /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -tegory, T > -Generating XML output for class cif::iterator_proxy -Generating XML output for class cif::key -Generating XML output for class cif::category::link -Generating XML output for class cif::link_validator -Generating XML output for class cif::matrix -Generating XML output for class cif::matrix_cofactors -Generating XML output for class cif::matrix_expression -Generating XML output for class cif::matrix_fixed -Generating XML output for class cif::matrix_matrix_multiplication -Generating XML output for class cif::matrix_scalar_multiplication -Generating XML output for class cif::matrix_subtraction -Generating XML output for class cif::missing_key_error -Generating XML output for class cif::mm::monomer -Generating XML output for class cif::multiple_results_error -Generating XML output for class cif::my_charconv -Generating XML output for class cif::parse_error -Generating XML output for class cif::parser -Generating XML output for class cif::point_type -Generating XML output for class cif::mm::polymer -Generating XML output for class cif::progress_bar -Generating XML output for class cif::quaternion_type -Generating XML output for class cif::mm::residue -Generating XML output for class cif::row -Generating XML output for class cif::row_handle -Generating XML output for class cif::row_initializer -Generating XML output for class cif::sac_parser -Generating XML output for class cif::atom_type_traits::SFData -Generating XML output for class cif::space_group -Generating XML output for class cif::spacegroup -Generating XML output for class cif::spherical_dots -Generating XML output for class cif::mm::structure -Generating XML output for class cif::mm::sugar -Generating XML output for class cif::sym_op -Generating XML output for class cif::symmetric_matrix -Generating XML output for class cif::symmetric_matrix_fixed -Generating XML output for class cif::symop_data -Generating XML output for class cif::symop_datablock -Generating XML output for class cif::transformation -Generating XML output for class cif::type_validator -Generating XML output for class cif::validation_category_impl -Generating XML output for class cif::validation_exception -Generating XML output for class cif::validator -Generating XML output for class cif::validator_factory -Generating XML output for concept cif::Numeric -Generating XML output for namespace cif -Generating XML output for namespace cif::colour -Generating XML output for namespace cif::colour::detail -Generating XML output for namespace cif::detail -Generating XML output for namespace cif::gzio -Generating XML output for namespace cif::literals -Generating XML output for namespace cif::mm -Generating XML output for namespace cif::pdb -Generating XML output for namespace std -Generating XML output for namespace std_experimental -Generating XML output for namespace std_experimental::detail -Generating XML output for file cif++.hpp -Generating XML output for file atom_type.hpp -Generating XML output for file category.hpp -Generating XML output for file compound.hpp -Generating XML output for file condition.hpp -Generating XML output for file datablock.hpp -Generating XML output for file dictionary_parser.hpp -Generating XML output for file exports.hpp -Generating XML output for file file.hpp -Generating XML output for file format.hpp -Generating XML output for file forward_decl.hpp -Generating XML output for file gzio.hpp -Generating XML output for file item.hpp -Generating XML output for file iterator.hpp -Generating XML output for file matrix.hpp -Generating XML output for file model.hpp -Generating XML output for file parser.hpp -Generating XML output for file pdb.hpp -Generating XML output for file cif2pdb.hpp -Generating XML output for file io.hpp -Generating XML output for file pdb2cif.hpp -Generating XML output for file tls.hpp -Generating XML output for file point.hpp -Generating XML output for file row.hpp -Generating XML output for file symmetry.hpp -Generating XML output for file text.hpp -Generating XML output for file utilities.hpp -Generating XML output for file validate.hpp -Generating XML output for page deprecated -Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/ -Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/ -Running plantuml with JAVA... -Running dot... -type lookup cache used 4697/65536 hits=49311 misses=4943 -symbol lookup cache used 5043/65536 hits=61869 misses=5043 -finished... tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2267,18 +2307,14 @@ type lookup cache used 4697/65536 hits=49311 misses=4943 symbol lookup cache used 5043/65536 hits=61869 misses=5043 finished... -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -[ 31%] Built target Doxygen-libcifpp -[ 34%] Generating documentation with Sphinx +[ 36%] Generating documentation with Sphinx cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.9/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx -[ 36%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/utilities.cpp Running Sphinx v8.1.3 loading translations [en]... done -/usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx90Warning: Sphinx 9 will drop support for representing paths as strings. 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Use "pathlib.Path" or "os.fspath" instead. + self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done [ 40%] Building CXX object CMakeFiles/cifpp.dir/src/compound.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/compound.cpp.o -MF CMakeFiles/cifpp.dir/src/compound.cpp.o.d -o CMakeFiles/cifpp.dir/src/compound.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/compound.cpp @@ -2292,21 +2328,21 @@ /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/cif2pdb.cpp [ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/pdb2cif.cpp +[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/pdb2cif_remark_3.cpp +[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp (!) Unabridged API: unexpected kind 'concept' (IGNORED) [~] Exhale: parsing Doxygen XML. -[+] Exhale: finished parsing Doxygen XML in 8.07 seconds. +[+] Exhale: finished parsing Doxygen XML in 16.1 seconds. [~] Exhale: generating reStructuredText documents. -[+] Exhale: generated reStructuredText documents in 7.93 seconds. +[+] Exhale: generated reStructuredText documents in 3.93 seconds. myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 8 source files that are out of date updating environment: [new config] 332 added, 0 changed, 0 removed reading sources... [ 0%] api/classcif_1_1atom__type__traits -[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/pdb2cif_remark_3.cpp -[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp [ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/validate-pdbx.cpp reading sources... [ 1%] api/classcif_1_1category @@ -2710,7 +2746,23 @@ /build/reproducible-path/libcifpp-7.0.9/docs/basics.rst:343: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/libcifpp-7.0.9/docs/symmetry.rst:37: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] looking for now-outdated files... none found -pickling environment... In file included from /usr/include/c++/14/string:42, +pickling environment... done +checking consistency... done +preparing documents... done +copying assets... +copying static files... +Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/documentation_options.js +Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/basic.css +Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/js/versions.js +copying static files: done +copying extra files... +copying extra files: done +copying assets: done +writing output... [ 0%] api/classcif_1_1atom__type__traits +writing output... [ 1%] api/classcif_1_1category +writing output... [ 1%] api/classcif_1_1cell +In file included from /usr/include/c++/14/string:42, from /usr/include/c++/14/stdexcept:39, from /usr/include/c++/14/system_error:43, from /usr/include/c++/14/bits/fs_fwd.h:35, @@ -2729,22 +2781,6 @@ /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here 780 | char letter_can; | ^~~~~~~~~~ -done -checking consistency... done -preparing documents... done -copying assets... -copying static files... -Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/language_data.js -Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/documentation_options.js -Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/basic.css -Writing evaluated template result to /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/sphinx/_static/js/versions.js -copying static files: done -copying extra files... -copying extra files: done -copying assets: done -writing output... [ 0%] api/classcif_1_1atom__type__traits -writing output... [ 1%] api/classcif_1_1category -writing output... [ 1%] api/classcif_1_1cell writing output... [ 1%] api/classcif_1_1compound writing output... [ 2%] api/classcif_1_1compound__factory writing output... [ 2%] api/classcif_1_1compound__source @@ -2794,34 +2830,6 @@ writing output... [ 15%] api/classcif_1_1sac__parser writing output... [ 15%] api/classcif_1_1spacegroup writing output... [ 16%] api/classcif_1_1spherical__dots -In file included from /usr/include/eigen3/Eigen/Core:341, - from /usr/include/eigen3/Eigen/Eigenvalues:11, - from /build/reproducible-path/libcifpp-7.0.9/src/symmetry.cpp:35: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] - 327 | internal::triangular_matrix_vector_product - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 328 | - | ~~~~~~~~~ - 332 | ::run(actualLhs.rows(),actualLhs.cols(), - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 333 | actualLhs.data(),actualLhs.outerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 334 | actualRhsPtr,1, - | ~~~~~~~~~~~~~~~ - 335 | dest.data(),dest.innerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 336 | actualAlpha); - | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here - 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ writing output... [ 16%] api/classcif_1_1symmetric__matrix writing output... [ 16%] api/classcif_1_1symmetric__matrix__fixed writing output... [ 17%] api/classcif_1_1transformation @@ -2897,6 +2905,34 @@ writing output... [ 38%] api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836 writing output... [ 38%] api/function_namespacecif_1a17188febf04153361cad42eb042da64a writing output... [ 38%] api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776 +In file included from /usr/include/eigen3/Eigen/Core:341, + from /usr/include/eigen3/Eigen/Eigenvalues:11, + from /build/reproducible-path/libcifpp-7.0.9/src/symmetry.cpp:35: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] + 327 | internal::triangular_matrix_vector_product + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 328 | + | ~~~~~~~~~ + 332 | ::run(actualLhs.rows(),actualLhs.cols(), + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 333 | actualLhs.data(),actualLhs.outerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 334 | actualRhsPtr,1, + | ~~~~~~~~~~~~~~~ + 335 | dest.data(),dest.innerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 336 | actualAlpha); + | ~~~~~~~~~~~~ +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here + 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ writing output... [ 39%] api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f writing output... [ 39%] api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4 writing output... [ 39%] api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29 @@ -3141,8 +3177,8 @@ [ 63%] Built target test-main make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/depend +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color=" @@ -3150,57 +3186,57 @@ make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/format-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/depend +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color=" -make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build +[ 65%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-v2-test.cpp make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -[ 65%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build -[ 68%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-v2-test.cpp -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-3d-test.cpp +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend -[ 70%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/model-test.cpp -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend +[ 68%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color=" -[ 72%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/model-test.cpp +[ 72%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o +[ 70%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/format-test.cpp -[ 75%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o +[ 75%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/rename-compound-test.cpp -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/sugar-test.cpp make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +[ 77%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-3d-test.cpp [ 79%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/sugar-test.cpp cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/spinner-test.cpp +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' [ 81%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/validate-pdbx-test.cpp [ 84%] Linking CXX executable spinner-test @@ -3218,15 +3254,15 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rename-compound-test.dir/link.d "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' [ 88%] Built target rename-compound-test -[ 90%] Linking CXX executable sugar-test -cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sugar-test.dir/link.d "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' -[ 90%] Built target sugar-test -[ 93%] Linking CXX executable validate-pdbx-test +[ 90%] Linking CXX executable validate-pdbx-test cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable sugar-test +cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/validate-pdbx-test.dir/link.d "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sugar-test.dir/link.d "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' +[ 93%] Built target sugar-test [ 93%] Built target validate-pdbx-test [ 95%] Linking CXX executable model-test cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 @@ -3340,10 +3376,10 @@ 8: Test command: /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.9/test" 8: Working Directory: /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test 8: Test timeout computed to be: 1500 -1: Randomness seeded to: 564725800 +1: Randomness seeded to: 3126880194 1: warning: no child to parent links were found for child cat_1 and parent cat_3 1: Error parsing mmCIF: This file does not seem to be an mmCIF file -3: Randomness seeded to: 4000362993 +3: Randomness seeded to: 342683859 3: Hello, world! 3: Hello, world! 3: Hello, world! @@ -3354,57 +3390,12 @@ 3: =============================================================================== 3: All tests passed (2 assertions in 2 test cases) 3: -1/8 Test #3: format-test ...................... Passed 0.14 sec -5: Randomness seeded to: 488171971 +1/8 Test #3: format-test ...................... Passed 0.06 sec +5: Randomness seeded to: 988630517 5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary 5: choosing N -4: Randomness seeded to: 4257103708 -4: Warning: no atoms loaded -4: Warning: no atoms loaded 5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary 5: choosing N -1: Adding mandatory item conn_type_id to category struct_conn -1: Adding mandatory item ptnr1_label_asym_id to category struct_conn -1: Adding mandatory item ptnr1_label_comp_id to category struct_conn -1: Adding mandatory item ptnr1_label_seq_id to category struct_conn -1: Adding mandatory item ptnr2_label_asym_id to category struct_conn -1: Adding mandatory item ptnr2_label_comp_id to category struct_conn -1: Adding mandatory item ptnr2_label_seq_id to category struct_conn -1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme -1: -1: Configuration error: -1: -1: The attempt to retrieve compound information for "&&&" failed. -1: -1: This information is searched for in a CCD file called components.cif or -1: components.cif.gz which should be located in one of the following directories: -1: -1: -1: (Note that you can add a directory to the search paths by setting the -1: LIBCIFPP_DATA_DIR environmental variable) -1: -1: On Linux an optional cron script might have been installed that automatically updates -1: components.cif and mmCIF dictionary files. This script only works when the file -1: libcifpp.conf contains an uncommented line with the text: -1: -1: update=true -1: -1: If you do not have a working cron script, you can manually update the files -1: in /var/cache/libcifpp using the following commands: -1: -1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif -1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic -1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic -1: -1: The current order of compound factory objects is: -1: -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/REA_v2.cif" -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/HEM.cif" -1: CCD components.cif resource -1: -1: The following named resources were loaded: -1: components.cif -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/ccd-subset.cif" -1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/mmcif_pdbx.dic" 5: Creating component index ... done 5: Loading component RXA... done 5: Will not rename in child category since there are already rows that link to the parent @@ -4173,6 +4164,11 @@ 5: A 1 88 GLU 88 88 88 GLU GLU A . n 5: A 1 89 SER 89 89 89 SER SER A . n 5: A 1 90 GLU 90 90 90 GLU GLU A . n +8: Randomness seeded to: 391107885 +8: =============================================================================== +8: All tests passed (15 assertions in 1 test case) +8: +2/8 Test #8: validate-pdbx-test ............... Passed 0.19 sec 5: A 1 91 ASN 91 91 91 ASN ASN A . n 5: A 1 92 LYS 92 92 92 LYS LYS A . n 5: A 1 93 MET 93 93 93 MET MET A . n @@ -5733,15 +5729,6 @@ 5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71 5: # 5: Skipping validation of empty category pdbx_branch_scheme -4: =============================================================================== -4: All tests passed (8500 assertions in 6 test cases) -4: -8: Randomness seeded to: 3165990886 -8: =============================================================================== -8: All tests passed (15 assertions in 1 test case) -8: -2/8 Test #4: model-test ....................... Passed 0.62 sec -3/8 Test #8: validate-pdbx-test ............... Passed 0.55 sec 5: data_1CBS 5: # 5: _entry.id 1CBS @@ -6985,7 +6972,6 @@ 5: ATOM 402 C CZ . TYR A 1 51 ? 21.179 30.818 36.604 1.00 16.59 ? 51 TYR A CZ 1 5: ATOM 403 O OH . TYR A 1 51 ? 22.060 31.633 35.932 1.00 17.52 ? 51 TYR A OH 1 5: ATOM 404 N N . ILE A 1 52 ? 18.610 26.676 35.726 1.00 10.57 ? 52 ILE A N 1 -1: Choosing X-PLOR version '' as refinement program. Score = 1 5: ATOM 405 C CA . ILE A 1 52 ? 19.520 26.004 34.801 1.00 9.09 ? 52 ILE A CA 1 5: ATOM 406 C C . ILE A 1 52 ? 20.066 27.020 33.801 1.00 8.55 ? 52 ILE A C 1 5: ATOM 407 O O . ILE A 1 52 ? 19.296 27.652 33.086 1.00 10.49 ? 52 ILE A O 1 @@ -8076,8 +8062,58 @@ 5: test cases: 1 | 1 passed 5: assertions: - none - 5: -4/8 Test #5: rename-compound-test ............. Passed 0.67 sec +1: Adding mandatory item conn_type_id to category struct_conn +1: Adding mandatory item ptnr1_label_asym_id to category struct_conn +1: Adding mandatory item ptnr1_label_comp_id to category struct_conn +1: Adding mandatory item ptnr1_label_seq_id to category struct_conn +1: Adding mandatory item ptnr2_label_asym_id to category struct_conn +1: Adding mandatory item ptnr2_label_comp_id to category struct_conn +1: Adding mandatory item ptnr2_label_seq_id to category struct_conn +1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme +1: +1: Configuration error: +1: +1: The attempt to retrieve compound information for "&&&" failed. +1: +1: This information is searched for in a CCD file called components.cif or +1: components.cif.gz which should be located in one of the following directories: +1: +1: +1: (Note that you can add a directory to the search paths by setting the +1: LIBCIFPP_DATA_DIR environmental variable) +1: +1: On Linux an optional cron script might have been installed that automatically updates +1: components.cif and mmCIF dictionary files. This script only works when the file +1: libcifpp.conf contains an uncommented line with the text: +1: +1: update=true +1: +1: If you do not have a working cron script, you can manually update the files +1: in /var/cache/libcifpp using the following commands: +1: +1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif +1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic +1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic +1: +1: The current order of compound factory objects is: +1: +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/REA_v2.cif" +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/HEM.cif" +1: CCD components.cif resource +1: +1: The following named resources were loaded: +1: components.cif -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/ccd-subset.cif" +1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/mmcif_pdbx.dic" +1: Choosing X-PLOR version '' as refinement program. Score = 1 +4: Randomness seeded to: 1098979065 +4: Warning: no atoms loaded +4: Warning: no atoms loaded +3/8 Test #5: rename-compound-test ............. Passed 0.36 sec 1: Adding mandatory item value to category pdbx_struct_assembly_prop +4: =============================================================================== +4: All tests passed (8500 assertions in 6 test cases) +4: +4/8 Test #4: model-test ....................... Passed 0.43 sec 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn 1: Adding mandatory item ptnr1_label_comp_id to category struct_conn @@ -8089,30 +8125,30 @@ 1: =============================================================================== 1: All tests passed (100465 assertions in 51 test cases) 1: -5/8 Test #1: unit-v2-test ..................... Passed 0.97 sec -2: Randomness seeded to: 2186609318 +5/8 Test #1: unit-v2-test ..................... Passed 0.51 sec +2: Randomness seeded to: 563897991 2: (1.70711,1.70711,0) 2: =============================================================================== 2: All tests passed (5099624 assertions in 15 test cases) 2: -6/8 Test #2: unit-3d-test ..................... Passed 3.58 sec -7: Randomness seeded to: 4154114049 +6/8 Test #2: unit-3d-test ..................... Passed 1.56 sec +6: Randomness seeded to: 2038809883 +6: =============================================================================== +6: All tests passed (10 assertions in 2 test cases) +6: +7/8 Test #6: sugar-test ....................... Passed 4.43 sec +7: Randomness seeded to: 1914422400 7: =============================================================================== 7: test cases: 3 | 3 passed 7: assertions: - none - 7: -7/8 Test #7: spinner-test ..................... Passed 4.39 sec -6: Randomness seeded to: 129067460 -6: =============================================================================== -6: All tests passed (10 assertions in 2 test cases) -6: -8/8 Test #6: sugar-test ....................... Passed 14.18 sec +8/8 Test #7: spinner-test ..................... Passed 4.74 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 14.29 sec +Total Test time (real) = 4.84 sec make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-S6lfTljA + rm -fr -- /tmp/dh-xdg-rundir-U3k4R6L1 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars @@ -8910,18 +8946,18 @@ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright dh_installchangelogs - install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc - install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog - install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data - install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog + install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc + install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog + install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data + install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog dh_installexamples install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples cp --reflink=auto -a ./examples/1cbs.cif.gz debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples @@ -8948,46 +8984,46 @@ Using 1738076869 as canonical time Normalizing debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz using File::StripNondeterminism::handlers::gzip Using 1738076869 as canonical time + Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png - Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png dh_compress - cd debian/libcifpp-data cd debian/libcifpp-dev cd debian/libcifpp-doc + cd debian/libcifpp-data cd debian/libcifpp7 + chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + cd '/build/reproducible-path/libcifpp-7.0.9' chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf + gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf - gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian - cd '/build/reproducible-path/libcifpp-7.0.9' + gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian cd '/build/reproducible-path/libcifpp-7.0.9' cd '/build/reproducible-path/libcifpp-7.0.9' cd '/build/reproducible-path/libcifpp-7.0.9' dh_fixperms - find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libcifpp7/usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 @@ -9030,14 +9066,14 @@ ' | LC_ALL=C sort >> debian/libcifpp-data/DEBIAN/conffiles chmod 0644 -- debian/libcifpp-data/DEBIAN/conffiles dh_gencontrol - install -m0755 -d debian/libcifpp-doc/DEBIAN - echo misc:Depends= >> debian/libcifpp-doc.substvars - echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars - dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc install -m0755 -d debian/libcifpp-dev/DEBIAN echo misc:Depends= >> debian/libcifpp-dev.substvars echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev + install -m0755 -d debian/libcifpp-doc/DEBIAN + echo misc:Depends= >> debian/libcifpp-doc.substvars + echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars + dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc install -m0755 -d debian/libcifpp-data/DEBIAN echo misc:Pre-Depends= >> debian/libcifpp-data.substvars dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data @@ -9047,21 +9083,21 @@ install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=af1acd2a8c670e49b3b24b611188ca605385cbe0 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/libcifpp-doc/DEBIAN/control - chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/libcifpp-data/DEBIAN/control + chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 chmod 0644 -- debian/libcifpp7/DEBIAN/control dh_md5sums - install -m0755 -d debian/libcifpp-dev/DEBIAN install -m0755 -d debian/libcifpp-data/DEBIAN - install -m0755 -d debian/libcifpp7/DEBIAN - cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/libcifpp-dev/DEBIAN + cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libcifpp-doc/DEBIAN - cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/libcifpp7/DEBIAN chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums + cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN cd debian/.debhelper/libcifpp7/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums @@ -9069,16 +9105,16 @@ chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libcifpp-dev .. - dpkg-deb --root-owner-group --build debian/libcifpp7 .. dpkg-deb --root-owner-group --build debian/libcifpp-data .. dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libcifpp-dev .. +dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.9-1_all.deb'. + dpkg-deb --root-owner-group --build debian/libcifpp7 .. dpkg-deb --root-owner-group --build debian/libcifpp-doc .. -dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.9-1_arm64.deb'. dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.9-1_all.deb'. -dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.9-1_all.deb'. -dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.9-1_arm64.deb'. dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.9-1_arm64.deb'. +dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.9-1_arm64.deb'. +dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.9-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libcifpp_7.0.9-1_arm64.buildinfo dpkg-genchanges --build=binary -O../libcifpp_7.0.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -9086,12 +9122,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3745332/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/438861 and its subdirectories -I: Current time: Wed Jan 29 11:21:40 -12 2025 -I: pbuilder-time-stamp: 1738192900 +I: removing directory /srv/workspace/pbuilder/3745332 and its subdirectories +I: Current time: Wed Mar 4 19:50:17 +14 2026 +I: pbuilder-time-stamp: 1772603417