Diff of the two buildlogs: -- --- b1/build.log 2025-10-21 16:30:32.853959357 +0000 +++ b2/build.log 2025-10-21 16:36:26.630319346 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 23 10:50:11 -12 2026 -I: pbuilder-time-stamp: 1795474211 +I: Current time: Wed Oct 22 06:31:40 +14 2025 +I: pbuilder-time-stamp: 1761064300 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1064916/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 21 16:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='40b1e6e984b642c9b92ecc20e879202f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1064916' - PS1='# ' - PS2='> ' + INVOCATION_ID=20edb9a9ff5c49f7ac49c98287bfa150 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1157347 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QXaTpzfe/pbuilderrc_7uDC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QXaTpzfe/b1 --logfile b1/build.log mmseqs2_18-8cc5c+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QXaTpzfe/pbuilderrc_a2D1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QXaTpzfe/b2 --logfile b2/build.log mmseqs2_18-8cc5c+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1064916/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 67 http://deb.debian.org/debian unstable/main arm64 libxxhash-dev arm64 0.8.3-2 [82.6 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 31.0 MB in 0s (119 MB/s) +Fetched 31.0 MB in 0s (68.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19960 files and directories currently installed.) @@ -486,7 +518,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 18-8cc5c+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -546,8 +582,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.5s) --- Generating done (0.1s) +-- Configuring done (10.0s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -574,124 +610,122 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/depend -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' +cd 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cc -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -MD -MT lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -MF CMakeFiles/microtar.dir/microtar.c.o.d -o CMakeFiles/microtar.dir/microtar.c.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar/microtar.c cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML80.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h +[ 4%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/ksw2 && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c -[ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/c++ -DGIT_SHA1=18-8cc5c+ds-1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version/Version.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h -[ 4%] Generating ../generated/VTML40.out.h +[ 5%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 5%] Generating ../generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML40.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h -[ 5%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp [ 5%] Generating ../generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h +[ 5%] Generating ../generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h -[ 5%] Built target version [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 6%] Generating ../generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h +[ 6%] Built target version +[ 6%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' +[ 6%] Built target microtar [ 6%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -[ 6%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -727,20 +761,22 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 6%] Built target microtar +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 9%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated @@ -757,107 +793,105 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp [ 10%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp [ 11%] Linking C static library libtinyexpr.a +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -[ 11%] Built target tinyexpr -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h -[ 11%] Generating ../generated/K4000.crf.h +[ 12%] Built target tinyexpr +[ 12%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h -[ 11%] Generating ../generated/easysearch.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp -[ 12%] Built target ksw2 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp [ 12%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -[ 12%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h +[ 12%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h [ 13%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp -[ 15%] Generating ../generated/blastp.sh.h +[ 14%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h -[ 15%] Generating ../generated/blastpgp.sh.h +[ 14%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h -[ 15%] Generating ../generated/map.sh.h +[ 14%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h -[ 16%] Generating ../generated/rbh.sh.h +[ 15%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h -[ 16%] Generating ../generated/linclust.sh.h +[ 15%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h -[ 16%] Generating ../generated/clustering.sh.h +[ 15%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h -[ 17%] Generating ../generated/cascaded_clustering.sh.h +[ 16%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h [ 18%] Generating ../generated/update_clustering.sh.h @@ -883,91 +917,93 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h [ 20%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh +[ 20%] Built target ksw2 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h [ 21%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h [ 22%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h [ 22%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h +[ 22%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h [ 23%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h -[ 23%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h [ 23%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 23%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp +[ 23%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated [ 24%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh -[ 25%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h +[ 25%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -[ 25%] Generating ../generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +[ 25%] Generating ../generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +[ 25%] Generating ../generated/iterativepp.sh.h [ 26%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h -[ 26%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h [ 26%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h [ 27%] Linking CXX static library libtantan.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 @@ -987,30 +1023,30 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/AlignmentSymmetry.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o @@ -1052,8 +1088,8 @@ [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Masker.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/MemoryMapped.cpp +[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/MMseqsMPI.cpp @@ -1061,13 +1097,13 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/ProfileStates.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/LibraryReader.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/gpuserver.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/renamedbkeys.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/makepaddedseqdb.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/masksequence.cpp @@ -1254,8 +1290,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2msa.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -1266,12 +1300,16 @@ /usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2stats.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -1427,8 +1465,6 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/cpmvrmlndb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o @@ -1600,9 +1636,9 @@ make[1]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds' dh_md5sums dh_builddeb -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_18-8cc5c+ds-1_arm64.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_18-8cc5c+ds-1_arm64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_18-8cc5c+ds-1_all.deb'. +dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_18-8cc5c+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_18-8cc5c+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_18-8cc5c+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1610,12 +1646,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1157347/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1064916 and its subdirectories -I: Current time: Mon Nov 23 10:53:30 -12 2026 -I: pbuilder-time-stamp: 1795474410 +I: removing directory /srv/workspace/pbuilder/1157347 and its subdirectories +I: Current time: Wed Oct 22 06:36:24 +14 2025 +I: pbuilder-time-stamp: 1761064584