Diff of the two buildlogs: -- --- b1/build.log 2025-10-11 21:34:28.895581940 +0000 +++ b2/build.log 2025-10-11 21:37:14.239759042 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 11 09:26:04 -12 2025 -I: pbuilder-time-stamp: 1760217964 +I: Current time: Sat Nov 14 17:57:31 +14 2026 +I: pbuilder-time-stamp: 1794628651 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +28,85 @@ dpkg-source: info: applying gcc-15 I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/47344/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 14 03:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='47344' - PS1='# ' - PS2='> ' + INVOCATION_ID=441d314c45dc4cb2a292f3b7a5dd45fd + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1131241 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QRoMTacG/pbuilderrc_jojz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QRoMTacG/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-4.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QRoMTacG/pbuilderrc_BAN0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QRoMTacG/b2 --logfile b2/build.log pbcopper_2.3.0+dfsg-4.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/47344/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -236,7 +268,7 @@ Get: 104 http://deb.debian.org/debian unstable/main arm64 meson all 1.9.1-1 [665 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] -Fetched 75.6 MB in 0s (168 MB/s) +Fetched 75.6 MB in 0s (201 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19958 files and directories currently installed.) @@ -595,8 +627,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Oct 11 21:26:39 UTC 2025. -Universal Time is now: Sat Oct 11 21:26:39 UTC 2025. +Local time is now: Sat Nov 14 03:57:57 UTC 2026. +Universal Time is now: Sat Nov 14 03:57:57 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -692,7 +724,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-4_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.3.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -766,27 +802,31 @@ [2/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp [4/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -c ../tests/src/align/test_EdlibAlign.cpp -[5/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF tests/pbcopper_test.p/src_align_test_Seeds.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -c ../tests/src/align/test_Seeds.cpp +[5/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp [6/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -c ../tests/src/align/test_GlobalLocalAlignment.cpp -[7/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp -[8/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp -[9/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp +[7/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp +[8/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF tests/pbcopper_test.p/src_align_test_Seeds.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -c ../tests/src/align/test_Seeds.cpp +[9/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp [10/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -MF tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -c ../tests/src/container/test_BitConversion.cpp [11/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -c ../src/align/ChainSeedsConfig.cpp [12/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o -MF 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-mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -c ../src/align/FindSeeds.cpp -[25/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp +[24/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -c ../tests/src/algorithm/test_Heteroduplex.cpp +[25/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -c ../src/align/cssw/ssw.c +[26/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -c ../src/align/SparseAlignment.cpp +[27/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -c ../src/align/LinearAlignment.cpp +[28/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -c ../src/align/cssw/ssw_cpp.cpp +[29/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43, @@ -802,142 +842,135 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -[26/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -c ../src/align/cssw/ssw.c -[27/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -c ../src/align/SparseAlignment.cpp -[28/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -c ../tests/src/algorithm/test_KMerIndex.cpp -[29/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -c ../src/align/cssw/ssw_cpp.cpp -[30/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 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src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -c ../src/cli2/HelpMetrics.cpp +[31/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -c ../tests/src/algorithm/test_KMerIndex.cpp +[32/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -c ../src/cli2/Option.cpp [33/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 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-mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -c ../tests/src/cli2/test_PositionalArgumentTranslator.cpp +[114/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -MF tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o.d -o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -c ../tests/src/cuda/test_AsciiConversion.cpp +[115/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op 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tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -c ../tests/src/cli2/test_PositionalArgumentTranslator.cpp +[117/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -c ../src/utility/Alarm.cpp [118/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -c ../tests/src/cli2/test_OptionValue.cpp -[119/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 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tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp -[124/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c 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src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread +[119/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp +[120/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp +[121/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp +[122/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c ../tests/src/cli2/test_OptionTranslator.cpp +[123/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp +[124/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp +[125/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp +[126/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp +[127/182] c++ -o src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -[129/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols +[128/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols +[129/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp [130/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -c ../tests/src/cli2/test_CommandLineParser.cpp -[131/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp -[132/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -MF tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o.d -o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -c ../tests/src/data/test_IntervalTree.cpp -[133/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -c ../tests/src/cli2/test_CLI.cpp -[134/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_Results.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -c ../tests/src/cli2/test_Results.cpp +[131/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_Results.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -c ../tests/src/cli2/test_Results.cpp +[132/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp +[133/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow 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tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp [135/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Interval.cpp.o -MF tests/pbcopper_test.p/src_data_test_Interval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Interval.cpp.o -c ../tests/src/data/test_Interval.cpp [136/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_MovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -c ../tests/src/data/test_MovieName.cpp -[137/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -MF tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o.d -o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp +[137/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -c ../tests/src/cli2/test_CLI.cpp [138/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond 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tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o.d -o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o -c ../tests/src/math/test_FishersExact.cpp [140/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_SNR.cpp.o -MF tests/pbcopper_test.p/src_data_test_SNR.cpp.o.d -o tests/pbcopper_test.p/src_data_test_SNR.cpp.o -c ../tests/src/data/test_SNR.cpp -[141/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF tests/pbcopper_test.p/src_data_test_Cigar.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -c ../tests/src/data/test_Cigar.cpp -[142/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_json_test_JSON.cpp.o -MF tests/pbcopper_test.p/src_json_test_JSON.cpp.o.d -o tests/pbcopper_test.p/src_json_test_JSON.cpp.o -c ../tests/src/json/test_JSON.cpp -[143/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -MF tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o.d -o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -c ../tests/src/math/test_ConfusionMatrix.cpp -[144/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 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-[147/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp -[148/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 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tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp -[155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp -[156/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp +[153/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; @@ -945,37 +978,40 @@ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ -[157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp -[158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp -[159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp -[160/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp -[161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp +[154/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp +[155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp +[156/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp +[157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp +[158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp +[159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp +[160/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp +[161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -c ../tests/src/utility/test_FastMod.cpp [162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -c ../tests/src/utility/test_Intrinsics.cpp -[163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -c ../tests/src/utility/test_FastMod.cpp -[164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp -[165/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp +[163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp +[164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp +[165/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp [166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp -[167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp -[168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp +[167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp +[168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -c ../tests/src/utility/test_Overloaded.cpp [169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp -[170/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -c ../tests/src/utility/test_Overloaded.cpp -[171/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -[172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp -[173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp -[174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp -[175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp -[176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp -[177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp +[170/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o +[171/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp +[172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp +[173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp +[174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp +[175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp +[176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp +[177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp [178/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp [179/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp -[180/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp -[181/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp +[180/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp +[181/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs -1/2 pbcopper formatting check OK 0.05s -2/2 pbcopper gtest unittests OK 10.52s +1/2 pbcopper formatting check OK 0.02s +2/2 pbcopper gtest unittests OK 8.92s Ok: 2 Fail: 0 @@ -1211,12 +1247,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1131241/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/47344 and its subdirectories -I: Current time: Sat Oct 11 09:34:28 -12 2025 -I: pbuilder-time-stamp: 1760218468 +I: removing directory /srv/workspace/pbuilder/1131241 and its subdirectories +I: Current time: Sat Nov 14 18:00:13 +14 2026 +I: pbuilder-time-stamp: 1794628813