Diff of the two buildlogs: -- --- b1/build.log 2025-09-09 15:50:58.202585813 +0000 +++ b2/build.log 2025-09-09 15:51:57.478663206 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Oct 12 10:13:18 -12 2026 -I: pbuilder-time-stamp: 1791843198 +I: Current time: Wed Sep 10 05:51:12 +14 2025 +I: pbuilder-time-stamp: 1757433072 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1497500/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 9 15:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='23ddfd1b546c48ed9c0c1dffa476e871' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1497500' - PS1='# ' - PS2='> ' + INVOCATION_ID=e5a872edcf3f47bc93b0503540be488f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3492323 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PYrcLBu4/pbuilderrc_0H5f --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PYrcLBu4/b1 --logfile b1/build.log prank_250331-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PYrcLBu4/pbuilderrc_14oN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PYrcLBu4/b2 --logfile b2/build.log prank_250331-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1497500/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -135,7 +167,7 @@ Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] -Fetched 11.0 MB in 0s (59.6 MB/s) +Fetched 11.0 MB in 0s (107 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -266,7 +298,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/prank-250331/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prank_250331-1_source.changes +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/prank-250331/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../prank_250331-1_source.changes dpkg-buildpackage: info: source package prank dpkg-buildpackage: info: source version 250331-1 dpkg-buildpackage: info: source distribution unstable @@ -311,41 +347,32 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, - from config.h:31, - from treenode.cpp:25: + from site.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -In file included from ancestralnode.h:24, - from hmmodel.h:36, - from config.h:31, - from translatesequences.cpp:22: -./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': -./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp +In file included from readnewick.h:29, + from readnewick.cpp:27: +treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': +treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from terminalsequence.cpp:24: + from pwhirschberg.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -In file included from ancestralnode.h:24, - from writefile.h:25, - from writefile.cpp:27: +In file included from terminalnode.h:23, + from terminalnode.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -In file included from readnewick.h:29, - from readnewick.cpp:27: -treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': -treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] - 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} - | ^ In file included from readalignment.h:28, from readalignment.cpp:23: treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': @@ -355,36 +382,42 @@ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from pwhirschberg.cpp:25: + from treenode.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, - from hmmodel.h:36, - from site.cpp:22: + from writefile.h:25, + from writefile.cpp:27: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp -In file included from terminalnode.h:23, - from terminalnode.cpp:22: +In file included from ancestralnode.h:24, + from hmmodel.h:36, + from config.h:31, + from terminalsequence.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o prank.o prank.cpp -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o postprobability.o postprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from progressivealignment.h:30, - from prank.cpp:29: + from translatesequences.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o prank.o prank.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o postprobability.o postprobability.cpp +In file included from readnewick.h:29, + from progressivealignment.cpp:28: +treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': +treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] + 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} + | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, @@ -395,13 +428,15 @@ 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o node.o node.cpp -In file included from readnewick.h:29, - from progressivealignment.cpp:28: -treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': -treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] +In file included from ancestralnode.h:24, + from hmmodel.h:36, + from config.h:31, + from progressivealignment.h:30, + from prank.cpp:29: +./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': +./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o intmatrix.o intmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -410,6 +445,7 @@ ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o intmatrix.o intmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o hmmodel.o hmmodel.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o hirschberg.o hirschberg.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o guidetree.o guidetree.cpp @@ -431,41 +467,50 @@ 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o eigen.o eigen.cpp -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from fasttree_tree.h:8, - from guidetree.cpp:23: + from fullprobability.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o characterprobability.o characterprobability.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from fullprobability.cpp:25: + from fasttree_tree.h:8, + from guidetree.cpp:23: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from characterprobability.cpp:24: + from ancestralsequence.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o check_version.o check_version.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from ancestralsequence.cpp:24: + from ancestralnode.cpp:27: +./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': +./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] + 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} + | ^ +In file included from ancestralnode.h:24, + from hmmodel.h:36, + from config.h:31, + from characterprobability.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} @@ -489,26 +534,25 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp +ancestralnode.cpp: In member function 'std::string AncestralNode::getThisAncCharactersAt(int)': +ancestralnode.cpp:1546:1: warning: control reaches end of non-void function [-Wreturn-type] + 1546 | } + | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from ancestralnode.cpp:27: + from exonerate_reads.cpp:10: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp -ancestralnode.cpp: In member function 'std::string AncestralNode::getThisAncCharactersAt(int)': -ancestralnode.cpp:1546:1: warning: control reaches end of non-void function [-Wreturn-type] - 1546 | } - | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o bppancestors.o bppancestors.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o raxmlancestors.o raxmlancestors.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o fasttree_tree.o fasttree_tree.cpp In file included from ancestralnode.h:24, - from hmmodel.h:36, - from config.h:31, - from exonerate_reads.cpp:10: + from bppancestors.h:24, + from bppancestors.cpp:29: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} @@ -522,20 +566,12 @@ 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, - from bppancestors.h:24, - from bppancestors.cpp:29: -./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': -./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] - 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} - | ^ -In file included from ancestralnode.h:24, from raxmlancestors.h:24, from raxmlancestors.cpp:30: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o fasttree_tree.o fasttree_tree.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-250331=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I/usr/include -o raxmlrebl.o raxmlrebl.cpp hmmodel.cpp: In member function 'void HMModel::readModel(const char*)': hmmodel.cpp:338:31: warning: '%i' directive writing between 1 and 11 bytes into a region of size 5 [-Wformat-overflow=] @@ -566,17 +602,17 @@ | ~~~~~~~~~~~~~~~~~ pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.121211" --section=1 --name="PRANK" prank.1.pod >prank.1 In file included from ancestralnode.h:24, - from hmmodel.h:36, - from config.h:31, - from fasttree_tree.h:8, - from fasttree_tree.cpp:21: + from raxmlrebl.h:24, + from raxmlrebl.cpp:30: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, - from raxmlrebl.h:24, - from raxmlrebl.cpp:30: + from hmmodel.h:36, + from config.h:31, + from fasttree_tree.h:8, + from fasttree_tree.cpp:21: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:365:63: warning: no return statement in function returning non-void [-Wreturn-type] 365 | virtual bool updateInsertionSite(int i, bool has_parent) {} @@ -620,8 +656,8 @@ dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src -dpkg-deb: building package 'prank' in '../prank_250331-1_arm64.deb'. dpkg-deb: building package 'prank-dbgsym' in '../prank-dbgsym_250331-1_arm64.deb'. +dpkg-deb: building package 'prank' in '../prank_250331-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../prank_250331-1_arm64.buildinfo dpkg-genchanges --build=binary -O../prank_250331-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -629,12 +665,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3492323/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1497500 and its subdirectories -I: Current time: Mon Oct 12 10:13:57 -12 2026 -I: pbuilder-time-stamp: 1791843237 +I: removing directory /srv/workspace/pbuilder/3492323 and its subdirectories +I: Current time: Wed Sep 10 05:51:55 +14 2025 +I: pbuilder-time-stamp: 1757433115