Diff of the two buildlogs: -- --- b1/build.log 2025-07-04 04:11:47.462465754 +0000 +++ b2/build.log 2025-07-04 04:58:43.681237687 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 5 21:35:58 -12 2026 -I: pbuilder-time-stamp: 1786008958 +I: Current time: Fri Jul 4 18:11:50 +14 2025 +I: pbuilder-time-stamp: 1751602310 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying skip_awkward.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1578099/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 4 04:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='2443f305f73e4c1c91314ea286da2555' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1578099' - PS1='# ' - PS2='> ' + INVOCATION_ID=6760cf7f51a2472f96bb785da3c09d40 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1288036 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pLTA9oMf/pbuilderrc_hFoB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pLTA9oMf/b1 --logfile b1/build.log python-anndata_0.12.0~rc1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pLTA9oMf/pbuilderrc_4nii --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pLTA9oMf/b2 --logfile b2/build.log python-anndata_0.12.0~rc1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1578099/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -387,7 +419,7 @@ Get: 217 http://deb.debian.org/debian unstable/main arm64 python3-xarray all 2025.03.1-8 [820 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-xlrd all 2.0.1-2 [88.9 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 python3-zarr all 3.0.6-2 [1990 kB] -Fetched 138 MB in 1s (127 MB/s) +Fetched 138 MB in 1s (215 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19963 files and directories currently installed.) @@ -1087,8 +1119,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Aug 6 09:37:27 UTC 2026. -Universal Time is now: Thu Aug 6 09:37:27 UTC 2026. +Local time is now: Fri Jul 4 04:12:24 UTC 2025. +Universal Time is now: Fri Jul 4 04:12:24 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -1303,7 +1335,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-anndata-0.12.0~rc1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-anndata_0.12.0~rc1-1_source.changes +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-anndata-0.12.0~rc1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-anndata_0.12.0~rc1-1_source.changes dpkg-buildpackage: info: source package python-anndata dpkg-buildpackage: info: source version 0.12.0~rc1-1 dpkg-buildpackage: info: source distribution unstable @@ -7368,7 +7404,7 @@ /usr/lib/python3/dist-packages/setuptools_scm/_get_version_impl.py:173: DeprecationWarning: empty regex for tag regex is invalid, using default warnings.warn(EMPTY_TAG_REGEX_DEPRECATION) -tests/lazy/test_concat.py: 1116 warnings +tests/lazy/test_concat.py: 1112 warnings tests/test_concatenate.py: 442 warnings tests/test_concatenate_disk.py: 104 warnings tests/test_utils.py: 1 warning @@ -7381,14 +7417,14 @@ /build/reproducible-path/python-anndata-0.12.0~rc1/.pybuild/cpython3_3.13_anndata/build/tests/test_backed_dense.py:84: ImplicitModificationWarning: Modifying `X` on a view results in data being overridden view.X = np.zeros((4, 2)) -tests/test_backed_sparse.py: 1392 warnings -tests/test_dask.py: 113 warnings -tests/test_io_backwards_compat.py: 9 warnings -tests/test_io_elementwise.py: 229 warnings +tests/test_backed_sparse.py: 1352 warnings +tests/test_dask.py: 104 warnings +tests/test_io_backwards_compat.py: 8 warnings +tests/test_io_elementwise.py: 225 warnings tests/test_io_partial.py: 6 warnings tests/test_io_utils.py: 1 warning -tests/test_readwrite.py: 413 warnings -tests/test_x.py: 37 warnings +tests/test_readwrite.py: 415 warnings +tests/test_x.py: 35 warnings /usr/lib/python3/dist-packages/zarr/codecs/vlen_utf8.py:44: UserWarning: The codec `vlen-utf8` is currently not part in the Zarr format 3 specification. It may not be supported by other zarr implementations and may change in the future. return cls(**configuration_parsed) @@ -7533,7 +7569,7 @@ self._set_arrayXarray_sparse(i, j, x) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -== 5252 passed, 634 skipped, 143 xfailed, 5459 warnings in 3308.27s (0:55:08) == +== 5252 passed, 634 skipped, 143 xfailed, 5401 warnings in 2697.02s (0:44:57) == debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-anndata-0.12.0~rc1' rm -fv /build/reproducible-path/python-anndata-0.12.0~rc1/.pybuild/cpython3_*_anndata/build/test.h5ad @@ -7567,12 +7603,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1288036/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1578099 and its subdirectories -I: Current time: Wed Aug 5 22:34:45 -12 2026 -I: pbuilder-time-stamp: 1786012485 +I: removing directory /srv/workspace/pbuilder/1288036 and its subdirectories +I: Current time: Fri Jul 4 18:58:42 +14 2025 +I: pbuilder-time-stamp: 1751605122