Diff of the two buildlogs: -- --- b1/build.log 2025-02-28 05:13:10.184665673 +0000 +++ b2/build.log 2025-02-28 05:17:18.101451362 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 1 23:33:36 -12 2026 -I: pbuilder-time-stamp: 1775129616 +I: Current time: Fri Feb 28 19:13:14 +14 2025 +I: pbuilder-time-stamp: 1740719594 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying numpy2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3166617/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 28 05:13 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='944f0472564349e280c0931102171227' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3166617' - PS1='# ' - PS2='> ' + INVOCATION_ID=d89c5613fb3e4685a4f73225dfbeb3a3 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3255352 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0UNaAAHc/pbuilderrc_usOz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0UNaAAHc/b1 --logfile b1/build.log python-pbcore_2.1.2+dfsg-11.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0UNaAAHc/pbuilderrc_2DAB --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0UNaAAHc/b2 --logfile b2/build.log python-pbcore_2.1.2+dfsg-11.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3166617/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -343,7 +375,7 @@ Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 8.1.3-5 [468 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-uritools all 4.0.3-1 [28.6 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-xmlschema all 3.4.3-1 [239 kB] -Fetched 82.0 MB in 1s (121 MB/s) +Fetched 82.0 MB in 1s (94.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19893 files and directories currently installed.) @@ -981,8 +1013,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Apr 2 11:34:04 UTC 2026. -Universal Time is now: Thu Apr 2 11:34:04 UTC 2026. +Local time is now: Fri Feb 28 05:13:55 UTC 2025. +Universal Time is now: Fri Feb 28 05:13:55 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... @@ -1165,7 +1197,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-11_source.changes +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-11_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-11 dpkg-buildpackage: info: source distribution unstable @@ -1183,8 +1219,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1225,8 +1261,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1247,8 +1283,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1529,219 +1565,219 @@ scheduling tests via LoadScopeScheduling -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -[gw3] [ 0%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -[gw4] [ 1%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -[gw6] [ 2%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -[gw6] [ 2%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw6] [ 3%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -[gw6] [ 4%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -[gw7] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -[gw7] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -[gw6] [ 6%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw6] [ 0%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -[gw5] [ 7%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +[gw5] [ 1%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw5] [ 7%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -[gw3] [ 8%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -[gw8] [ 9%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +[gw4] [ 2%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ +[gw3] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw9] [ 3%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw9] [ 4%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw10] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -[gw8] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +[gw10] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw8] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw4] [ 11%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw3] [ 12%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +[gw10] [ 6%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +[gw3] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +[gw3] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw6] [ 8%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +[gw7] [ 9%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +[gw7] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw7] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw8] [ 11%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype [gw3] [ 12%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -[gw3] [ 13%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -[gw11] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -[gw11] [ 15%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw7] [ 15%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw5] [ 16%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -[gw5] [ 17%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -[gw4] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +[gw4] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +[gw4] [ 13%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw4] [ 18%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +[gw4] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw4] [ 19%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -[gw3] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -[gw3] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -[gw4] [ 21%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw2] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +[gw2] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -[gw2] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +[gw2] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw2] [ 23%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName +[gw2] [ 16%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -[gw9] [ 24%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -[gw9] [ 25%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw2] [ 17%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +[gw2] [ 17%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw2] [ 18%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +[gw2] [ 19%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +[gw6] [ 20%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +[gw6] [ 20%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error +[gw6] [ 21%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error +[gw2] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +[gw2] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +[gw5] [ 23%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +[gw5] [ 24%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +[gw5] [ 25%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice [gw5] [ 25%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw4] [ 26%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw2] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw2] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw1] [ 28%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +[gw3] [ 26%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw3] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw4] [ 28%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw4] [ 29%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +[gw0] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -[gw1] [ 29%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +[gw4] [ 31%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +[gw9] [ 32%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +tests/test_pbcore_io_FofnIO.py::test_simple +[gw8] [ 32%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +[gw8] [ 33%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +[gw9] [ 34%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw9] [ 35%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw0] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -[gw1] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +[gw0] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw7] [ 30%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw7] [ 31%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -[gw6] [ 32%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -tests/test_pbcore_io_FofnIO.py::test_simple -[gw6] [ 32%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple -tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw6] [ 33%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -[gw11] [ 34%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -[gw11] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -[gw8] [ 35%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw10] [ 37%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -[gw8] [ 36%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -[gw4] [ 37%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw4] [ 37%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw9] [ 38%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw10] [ 39%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +[gw10] [ 37%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +[gw5] [ 38%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +[gw7] [ 39%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +[gw11] [ 40%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -[gw10] [ 40%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw10] [ 40%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw3] [ 41%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw3] [ 42%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw0] [ 42%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw10] [ 43%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -[gw2] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -[gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -[gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -[gw2] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -[gw2] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_BlasrIO.py::test_m5 -[gw7] [ 47%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw7] [ 48%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -[gw8] [ 49%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw8] [ 50%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw9] [ 50%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -tests/test_dataset_run_split.py::test -[gw9] [ 51%] SKIPPED tests/test_dataset_run_split.py::test -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw4] [ 52%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw4] [ 52%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw11] [ 53%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -[gw11] [ 54%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -[gw7] [ 55%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw7] [ 55%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -[gw3] [ 56%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw3] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw10] [ 57%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -[gw10] [ 58%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -[gw5] [ 59%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -[gw5] [ 60%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw5] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw1] [ 61%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +[gw11] [ 40%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw0] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -[gw1] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw0] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -[gw1] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +[gw0] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -[gw1] [ 63%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +[gw11] [ 43%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +[gw0] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV -[gw1] [ 64%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw5] [ 45%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw7] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +[gw6] [ 46%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +tests/test_pbcore_io_BlasrIO.py::test_m4 +[gw6] [ 47%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +[gw3] [ 47%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw4] [ 48%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +[gw5] [ 49%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +[gw0] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -[gw1] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +[gw0] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw1] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw0] [ 51%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments tests/test_pbcore_io_FofnIO.py::test_absolutifying -[gw6] [ 66%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +[gw9] [ 52%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw6] [ 67%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw8] [ 67%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -[gw3] [ 68%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw9] [ 52%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw3] [ 53%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw4] [ 54%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +[gw8] [ 55%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +[gw8] [ 55%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +[gw1] [ 56%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw10] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw7] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw10] [ 58%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +[gw11] [ 59%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta +[gw11] [ 60%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw8] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw7] [ 61%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +tests/test_pbcore_io_BlasrIO.py::test_m5 +[gw6] [ 62%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw6] [ 62%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +[gw9] [ 63%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw5] [ 64%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta +tests/test_dataset_run_split.py::test +[gw5] [ 65%] SKIPPED tests/test_dataset_run_split.py::test +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +[gw3] [ 65%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw10] [ 66%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +[gw4] [ 67%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -[gw7] [ 69%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw4] [ 70%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw11] [ 70%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw9] [ 71%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw11] [ 67%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +[gw7] [ 68%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw9] [ 69%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw3] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw3] [ 70%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw4] [ 71%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw6] [ 72%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +[gw5] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -[gw10] [ 72%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -[gw6] [ 72%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw5] [ 73%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw0] [ 74%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +[gw9] [ 73%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw2] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +[gw1] [ 75%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize [gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry [gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry @@ -1753,62 +1789,62 @@ [gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw2] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable -[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -[gw1] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry +[gw0] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw1] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV +[gw0] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -[gw1] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -[gw1] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -[gw1] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw0] [ 86%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw1] [ 82%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws -[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws +[gw1] [ 83%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws -[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws +[gw1] [ 84%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters -[gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters +[gw1] [ 85%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters -[gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters +[gw1] [ 85%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split +[gw1] [ 86%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references +[gw1] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter -[gw1] [ 91%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter +[gw1] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit +[gw1] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -[gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +[gw0] [ 89%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +[gw0] [ 90%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +[gw0] [ 90%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +[gw0] [ 91%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +[gw0] [ 92%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw0] [ 92%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw1] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -[gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +[gw1] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -[gw0] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +[gw1] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split -[gw0] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split +[gw1] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -[gw0] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +[gw1] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -[gw0] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +[gw1] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded -[gw0] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded +[gw1] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases -[gw0] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases +[gw1] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks -[gw0] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks +[gw1] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups -[gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups +[gw1] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== tests/test_pbcore_io_FastqIO.py: 11 warnings @@ -1824,6 +1860,15 @@ /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:587: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return r.tostring().decode("ascii") +tests/test_pbcore_io_AlnFileReaders.py: 20 warnings + /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. + return y.tostring().decode("ascii") + +tests/test_pbcore_io_AlnFileReaders.py: 118 warnings +tests/test_pbcore_extract_bam_sequence.py: 1 warning + /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. + return _gusfieldTrans[uc].tostring().decode("ascii") + tests/test_pbcore_io_AlnFileReaders.py: 3 warnings tests/test_pbdataset_split.py: 16 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/PacBioBamIndex.py:159: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) @@ -1834,15 +1879,6 @@ /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/utils.py:30: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). return datetime.datetime.utcnow().strftime("%Y-%m-%dT%H:%M:%S%f")[:-6] -tests/test_pbcore_io_AlnFileReaders.py: 20 warnings - /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. - return y.tostring().decode("ascii") - -tests/test_pbcore_io_AlnFileReaders.py: 118 warnings -tests/test_pbcore_extract_bam_sequence.py: 1 warning - /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. - return _gusfieldTrans[uc].tostring().decode("ascii") - tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName @@ -1856,27 +1892,27 @@ Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= -0.28s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -0.27s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -0.17s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -0.15s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -0.13s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -0.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split -0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -0.07s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -0.05s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -0.05s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -0.05s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.61s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +0.45s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +0.35s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.34s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.30s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +0.26s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +0.22s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +0.21s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split +0.14s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +0.10s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.09s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +0.07s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +0.07s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +0.06s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +0.05s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta 0.05s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -0.04s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -0.02s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -0.02s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -================ 122 passed, 18 skipped, 461 warnings in 4.18s ================= +0.03s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +0.02s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +================ 122 passed, 18 skipped, 461 warnings in 10.27s ================ I: pybuild pybuild:334: rm -rfv /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml' removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml' @@ -1900,8 +1936,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -2244,12 +2280,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3255352/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3166617 and its subdirectories -I: Current time: Wed Apr 1 23:36:08 -12 2026 -I: pbuilder-time-stamp: 1775129768 +I: removing directory /srv/workspace/pbuilder/3255352 and its subdirectories +I: Current time: Fri Feb 28 19:17:17 +14 2025 +I: pbuilder-time-stamp: 1740719837