Diff of the two buildlogs: -- --- b1/build.log 2025-10-12 17:05:18.417456335 +0000 +++ b2/build.log 2025-10-12 17:07:40.217601389 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 12 05:03:26 -12 2025 -I: pbuilder-time-stamp: 1760288606 +I: Current time: Sun Nov 15 13:28:21 +14 2026 +I: pbuilder-time-stamp: 1794698901 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3401299/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 14 23:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='72a67debdc174cb5bb1bd1bb4cbf5a8d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3401299' - PS1='# ' - PS2='> ' + INVOCATION_ID=64a6c0e31cbe4cfc80ef39b88ab9bac9 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3834828 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MCK22ZbN/pbuilderrc_43uQ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MCK22ZbN/b1 --logfile b1/build.log racon_1.5.0-4.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MCK22ZbN/pbuilderrc_dNHd --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MCK22ZbN/b2 --logfile b2/build.log racon_1.5.0-4.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3401299/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -199,7 +231,7 @@ Get: 72 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.5-1 [9656 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 74 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] -Fetched 31.3 MB in 0s (85.0 MB/s) +Fetched 31.3 MB in 0s (147 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19958 files and directories currently installed.) @@ -510,7 +542,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-4 dpkg-buildpackage: info: source distribution unstable @@ -563,16 +599,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 10%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -587,10 +623,10 @@ make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' +make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build +make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o @@ -617,112 +653,112 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (2 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (4 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (1 ms) +[ OK ] RaconInitializeTest.WindowLengthError (3 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (7 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (7 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) -[----------] 5 tests from RaconInitializeTest (18 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) +[----------] 5 tests from RaconInitializeTest (26 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.001432 s -[racon::Polisher::initialize] loaded sequences 0.066435 s -[racon::Polisher::initialize] loaded overlaps 0.000345 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.047385 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.066215 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.083698 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.094843 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.106934 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.116503 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.138113 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.147707 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.155318 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.161927 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.171102 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.179010 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.190752 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.193729 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.206807 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.213813 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.222784 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.233635 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.238151 s [racon::Polisher::initialize] aligning overlaps [====================] 0.248718 s -[racon::Polisher::initialize] transformed data into windows 0.003814 s -[racon::Polisher::polish] generating consensus [=> ] 0.025553 s [racon::Polisher::polish] generating consensus [==> ] 0.048770 s [racon::Polisher::polish] generating consensus [===> ] 0.068359 s [racon::Polisher::polish] generating consensus [====> ] 0.083644 s [racon::Polisher::polish] generating consensus [=====> ] 0.093533 s [racon::Polisher::polish] generating consensus [======> ] 0.104169 s [racon::Polisher::polish] generating consensus [=======> ] 0.114491 s [racon::Polisher::polish] generating consensus [========> ] 0.125661 s [racon::Polisher::polish] generating consensus [=========> ] 0.141331 s [racon::Polisher::polish] generating consensus [==========> ] 0.159668 s [racon::Polisher::polish] generating consensus [===========> ] 0.186811 s [racon::Polisher::polish] generating consensus [============> ] 0.222741 s [racon::Polisher::polish] generating consensus [=============> ] 0.300967 s [racon::Polisher::polish] generating consensus [==============> ] 0.331772 s [racon::Polisher::polish] generating consensus [===============> ] 0.361632 s [racon::Polisher::polish] generating consensus [================> ] 0.388672 s [racon::Polisher::polish] generating consensus [=================> ] 0.415329 s [racon::Polisher::polish] generating consensus [==================> ] 0.437415 s [racon::Polisher::polish] generating consensus [===================>] 0.462495 s [racon::Polisher::polish] generating consensus [====================] 0.549779 s -[racon::Polisher::] total = 0.897970 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (911 ms) +[racon::Polisher::initialize] loaded target sequences 0.001267 s +[racon::Polisher::initialize] loaded sequences 0.067929 s +[racon::Polisher::initialize] loaded overlaps 0.000353 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.033533 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.053082 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.071067 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.084362 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104021 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.120316 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.163555 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.181004 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.196698 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.212033 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.229455 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.245624 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.266548 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.275011 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.308718 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.353965 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.391725 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.400873 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.405736 s [racon::Polisher::initialize] aligning overlaps [====================] 0.407326 s +[racon::Polisher::initialize] transformed data into windows 0.001452 s +[racon::Polisher::polish] generating consensus [=> ] 0.055952 s [racon::Polisher::polish] generating consensus [==> ] 0.124401 s [racon::Polisher::polish] generating consensus [===> ] 0.183280 s [racon::Polisher::polish] generating consensus [====> ] 0.229471 s [racon::Polisher::polish] generating consensus [=====> ] 0.252577 s [racon::Polisher::polish] generating consensus [======> ] 0.280066 s [racon::Polisher::polish] generating consensus [=======> ] 0.311935 s [racon::Polisher::polish] generating consensus [========> ] 0.330083 s [racon::Polisher::polish] generating consensus [=========> ] 0.452161 s [racon::Polisher::polish] generating consensus [==========> ] 0.510247 s [racon::Polisher::polish] generating consensus [===========> ] 0.594591 s [racon::Polisher::polish] generating consensus [============> ] 0.667738 s [racon::Polisher::polish] generating consensus [=============> ] 0.778960 s [racon::Polisher::polish] generating consensus [==============> ] 0.907946 s [racon::Polisher::polish] generating consensus [===============> ] 0.980886 s [racon::Polisher::polish] generating consensus [================> ] 1.054382 s [racon::Polisher::polish] generating consensus [=================> ] 1.107712 s [racon::Polisher::polish] generating consensus [==================> ] 1.112385 s [racon::Polisher::polish] generating consensus [===================>] 1.155219 s [racon::Polisher::polish] generating consensus [====================] 1.271125 s +[racon::Polisher::] total = 1.772436 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (1790 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.001176 s -[racon::Polisher::initialize] loaded sequences 0.036571 s -[racon::Polisher::initialize] loaded overlaps 0.000413 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.038578 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.072841 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.084555 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096653 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104913 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109708 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.120192 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.139933 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.143537 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.150719 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.156864 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.170616 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.174591 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183848 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194517 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207176 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.210103 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.214586 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.227374 s [racon::Polisher::initialize] aligning overlaps [====================] 0.232591 s -[racon::Polisher::initialize] transformed data into windows 0.000632 s -[racon::Polisher::polish] generating consensus [=> ] 0.026757 s [racon::Polisher::polish] generating consensus [==> ] 0.057835 s [racon::Polisher::polish] generating consensus [===> ] 0.081919 s [racon::Polisher::polish] generating consensus [====> ] 0.102332 s [racon::Polisher::polish] generating consensus [=====> ] 0.117058 s [racon::Polisher::polish] generating consensus [======> ] 0.130918 s [racon::Polisher::polish] generating consensus [=======> ] 0.148130 s [racon::Polisher::polish] generating consensus [========> ] 0.162724 s [racon::Polisher::polish] generating consensus [=========> ] 0.180139 s [racon::Polisher::polish] generating consensus [==========> ] 0.207143 s [racon::Polisher::polish] generating consensus [===========> ] 0.242922 s [racon::Polisher::polish] generating consensus [============> ] 0.285128 s [racon::Polisher::polish] generating consensus [=============> ] 0.347506 s [racon::Polisher::polish] generating consensus [==============> ] 0.395140 s [racon::Polisher::polish] generating consensus [===============> ] 0.441214 s [racon::Polisher::polish] generating consensus [================> ] 0.486603 s [racon::Polisher::polish] generating consensus [=================> ] 0.530081 s [racon::Polisher::polish] generating consensus [==================> ] 0.555145 s [racon::Polisher::polish] generating consensus [===================>] 0.584100 s [racon::Polisher::polish] generating consensus [====================] 0.759566 s -[racon::Polisher::] total = 1.055194 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1067 ms) +[racon::Polisher::initialize] loaded target sequences 0.000610 s +[racon::Polisher::initialize] loaded sequences 0.034666 s +[racon::Polisher::initialize] loaded overlaps 0.000347 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.026079 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.047613 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075981 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.101302 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.127685 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.129498 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.151468 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.167121 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.178955 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.198705 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.209800 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.235194 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.254392 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.265535 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.279000 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.296952 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.326768 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.340619 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.350065 s [racon::Polisher::initialize] aligning overlaps [====================] 0.362388 s +[racon::Polisher::initialize] transformed data into windows 0.000312 s +[racon::Polisher::polish] generating consensus [=> ] 0.063966 s [racon::Polisher::polish] generating consensus [==> ] 0.126123 s [racon::Polisher::polish] generating consensus [===> ] 0.196789 s [racon::Polisher::polish] generating consensus [====> ] 0.247976 s [racon::Polisher::polish] generating consensus [=====> ] 0.279933 s [racon::Polisher::polish] generating consensus [======> ] 0.314481 s [racon::Polisher::polish] generating consensus [=======> ] 0.356783 s [racon::Polisher::polish] generating consensus [========> ] 0.387906 s [racon::Polisher::polish] generating consensus [=========> ] 0.430487 s [racon::Polisher::polish] generating consensus [==========> ] 0.491479 s [racon::Polisher::polish] generating consensus [===========> ] 0.564676 s [racon::Polisher::polish] generating consensus [============> ] 0.615582 s [racon::Polisher::polish] generating consensus [=============> ] 0.756540 s [racon::Polisher::polish] generating consensus [==============> ] 0.852927 s [racon::Polisher::polish] generating consensus [===============> ] 0.951563 s [racon::Polisher::polish] generating consensus [================> ] 1.037133 s [racon::Polisher::polish] generating consensus [=================> ] 1.127943 s [racon::Polisher::polish] generating consensus [==================> ] 1.171075 s [racon::Polisher::polish] generating consensus [===================>] 1.245086 s [racon::Polisher::polish] generating consensus [====================] 1.431479 s +[racon::Polisher::] total = 1.848001 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1857 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.001194 s -[racon::Polisher::initialize] loaded sequences 0.061016 s -[racon::Polisher::initialize] loaded overlaps 0.021793 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.004527 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004809 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005078 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005393 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005463 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005622 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005839 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005906 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006142 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006408 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006629 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006834 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007134 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007273 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007351 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007375 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007382 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007533 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007539 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007545 s -[racon::Polisher::initialize] transformed data into windows 0.001909 s -[racon::Polisher::polish] generating consensus [=> ] 0.066263 s [racon::Polisher::polish] generating consensus [==> ] 0.101358 s [racon::Polisher::polish] generating consensus [===> ] 0.125893 s [racon::Polisher::polish] generating consensus [====> ] 0.141149 s [racon::Polisher::polish] generating consensus [=====> ] 0.152956 s [racon::Polisher::polish] generating consensus [======> ] 0.163254 s [racon::Polisher::polish] generating consensus [=======> ] 0.173495 s [racon::Polisher::polish] generating consensus [========> ] 0.185385 s [racon::Polisher::polish] generating consensus [=========> ] 0.199047 s [racon::Polisher::polish] generating consensus [==========> ] 0.215432 s [racon::Polisher::polish] generating consensus [===========> ] 0.242718 s [racon::Polisher::polish] generating consensus [============> ] 0.278689 s [racon::Polisher::polish] generating consensus [=============> ] 0.325559 s [racon::Polisher::polish] generating consensus [==============> ] 0.373106 s [racon::Polisher::polish] generating consensus [===============> ] 0.406205 s [racon::Polisher::polish] generating consensus [================> ] 0.430645 s [racon::Polisher::polish] generating consensus [=================> ] 0.464550 s [racon::Polisher::polish] generating consensus [==================> ] 0.483829 s [racon::Polisher::polish] generating consensus [===================>] 0.500731 s [racon::Polisher::polish] generating consensus [====================] 0.585536 s -[racon::Polisher::] total = 0.705528 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (714 ms) +[racon::Polisher::initialize] loaded target sequences 0.000619 s +[racon::Polisher::initialize] loaded sequences 0.050116 s +[racon::Polisher::initialize] loaded overlaps 0.038383 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.010265 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.010558 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.010760 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.010959 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.011155 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.011356 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.011558 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.011752 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.011945 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.012141 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.012334 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.012553 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.012749 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.012947 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.013144 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.013342 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.013538 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.013733 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.013930 s [racon::Polisher::initialize] aligning overlaps [====================] 0.014126 s +[racon::Polisher::initialize] transformed data into windows 0.008293 s +[racon::Polisher::polish] generating consensus [=> ] 0.059135 s [racon::Polisher::polish] generating consensus [==> ] 0.112218 s [racon::Polisher::polish] generating consensus [===> ] 0.147265 s [racon::Polisher::polish] generating consensus [====> ] 0.180876 s [racon::Polisher::polish] generating consensus [=====> ] 0.198580 s [racon::Polisher::polish] generating consensus [======> ] 0.220744 s [racon::Polisher::polish] generating consensus [=======> ] 0.245686 s [racon::Polisher::polish] generating consensus [========> ] 0.270407 s [racon::Polisher::polish] generating consensus [=========> ] 0.294822 s [racon::Polisher::polish] generating consensus [==========> ] 0.338419 s [racon::Polisher::polish] generating consensus [===========> ] 0.397303 s [racon::Polisher::polish] generating consensus [============> ] 0.470521 s [racon::Polisher::polish] generating consensus [=============> ] 0.568289 s [racon::Polisher::polish] generating consensus [==============> ] 0.679793 s [racon::Polisher::polish] generating consensus [===============> ] 0.763148 s [racon::Polisher::polish] generating consensus [================> ] 0.825023 s [racon::Polisher::polish] generating consensus [=================> ] 0.898448 s [racon::Polisher::polish] generating consensus [==================> ] 0.910007 s [racon::Polisher::polish] generating consensus [===================>] 0.944560 s [racon::Polisher::polish] generating consensus [====================] 1.059367 s +[racon::Polisher::] total = 1.181796 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1206 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.001165 s -[racon::Polisher::initialize] loaded sequences 0.038447 s -[racon::Polisher::initialize] loaded overlaps 0.030298 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.004495 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004744 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005078 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005327 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005501 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005682 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006004 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006462 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006612 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006793 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007053 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.007522 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007687 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008015 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008314 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008705 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008860 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008988 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009134 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009147 s -[racon::Polisher::initialize] transformed data into windows 0.000666 s -[racon::Polisher::polish] generating consensus [=> ] 0.068028 s [racon::Polisher::polish] generating consensus [==> ] 0.109120 s [racon::Polisher::polish] generating consensus [===> ] 0.132880 s [racon::Polisher::polish] generating consensus [====> ] 0.154222 s [racon::Polisher::polish] generating consensus [=====> ] 0.172964 s [racon::Polisher::polish] generating consensus [======> ] 0.183973 s [racon::Polisher::polish] generating consensus [=======> ] 0.197794 s [racon::Polisher::polish] generating consensus [========> ] 0.212260 s [racon::Polisher::polish] generating consensus [=========> ] 0.226018 s [racon::Polisher::polish] generating consensus [==========> ] 0.253503 s [racon::Polisher::polish] generating consensus [===========> ] 0.292936 s [racon::Polisher::polish] generating consensus [============> ] 0.330011 s [racon::Polisher::polish] generating consensus [=============> ] 0.387921 s [racon::Polisher::polish] generating consensus [==============> ] 0.442789 s [racon::Polisher::polish] generating consensus [===============> ] 0.491335 s [racon::Polisher::polish] generating consensus [================> ] 0.534366 s [racon::Polisher::polish] generating consensus [=================> ] 0.578095 s [racon::Polisher::polish] generating consensus [==================> ] 0.599929 s [racon::Polisher::polish] generating consensus [===================>] 0.625050 s [racon::Polisher::polish] generating consensus [====================] 0.752942 s -[racon::Polisher::] total = 0.850220 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (852 ms) +[racon::Polisher::initialize] loaded target sequences 0.000469 s +[racon::Polisher::initialize] loaded sequences 0.026357 s +[racon::Polisher::initialize] loaded overlaps 0.028587 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.005315 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005421 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.007349 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.007424 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.007492 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.007592 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.007684 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007777 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007867 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007961 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.008054 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008150 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008239 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008322 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008408 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008504 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008584 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008672 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.008757 s [racon::Polisher::initialize] aligning overlaps [====================] 0.010071 s +[racon::Polisher::initialize] transformed data into windows 0.000343 s +[racon::Polisher::polish] generating consensus [=> ] 0.052103 s [racon::Polisher::polish] generating consensus [==> ] 0.114771 s [racon::Polisher::polish] generating consensus [===> ] 0.173864 s [racon::Polisher::polish] generating consensus [====> ] 0.215624 s [racon::Polisher::polish] generating consensus [=====> ] 0.237623 s [racon::Polisher::polish] generating consensus [======> ] 0.268717 s [racon::Polisher::polish] generating consensus [=======> ] 0.294946 s [racon::Polisher::polish] generating consensus [========> ] 0.329750 s [racon::Polisher::polish] generating consensus [=========> ] 0.359815 s [racon::Polisher::polish] generating consensus [==========> ] 0.423507 s [racon::Polisher::polish] generating consensus [===========> ] 0.516659 s [racon::Polisher::polish] generating consensus [============> ] 0.609149 s [racon::Polisher::polish] generating consensus [=============> ] 0.804207 s [racon::Polisher::polish] generating consensus [==============> ] 0.911498 s [racon::Polisher::polish] generating consensus [===============> ] 0.978181 s [racon::Polisher::polish] generating consensus [================> ] 1.082872 s [racon::Polisher::polish] generating consensus [=================> ] 1.177201 s [racon::Polisher::polish] generating consensus [==================> ] 1.220730 s [racon::Polisher::polish] generating consensus [===================>] 1.275967 s [racon::Polisher::polish] generating consensus [====================] 1.422309 s +[racon::Polisher::] total = 1.499081 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1504 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.001194 s -[racon::Polisher::initialize] loaded sequences 0.057701 s -[racon::Polisher::initialize] loaded overlaps 0.000293 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.038168 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.056257 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.063717 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.078226 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.087082 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.092605 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.107244 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.128955 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.136464 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.142831 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.156671 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.160651 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.169945 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.180660 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.189677 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.190265 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.192007 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.197924 s [racon::Polisher::initialize] aligning overlaps [====================] 0.198485 s -[racon::Polisher::initialize] transformed data into windows 0.003558 s -[racon::Polisher::polish] generating consensus [=> ] 0.098943 s [racon::Polisher::polish] generating consensus [==> ] 0.099133 s [racon::Polisher::polish] generating consensus [===> ] 0.182705 s [racon::Polisher::polish] generating consensus [====> ] 0.182752 s [racon::Polisher::polish] generating consensus [=====> ] 0.224744 s [racon::Polisher::polish] generating consensus [======> ] 0.224783 s [racon::Polisher::polish] generating consensus [=======> ] 0.259912 s [racon::Polisher::polish] generating consensus [========> ] 0.259953 s [racon::Polisher::polish] generating consensus [=========> ] 0.320588 s [racon::Polisher::polish] generating consensus [==========> ] 0.320642 s [racon::Polisher::polish] generating consensus [===========> ] 0.429796 s [racon::Polisher::polish] generating consensus [============> ] 0.442259 s [racon::Polisher::polish] generating consensus [=============> ] 0.619922 s [racon::Polisher::polish] generating consensus [==============> ] 0.619956 s [racon::Polisher::polish] generating consensus [===============> ] 0.738863 s [racon::Polisher::polish] generating consensus [================> ] 0.738920 s [racon::Polisher::polish] generating consensus [=================> ] 0.844539 s [racon::Polisher::polish] generating consensus [==================> ] 0.844572 s [racon::Polisher::polish] generating consensus [===================>] 0.932015 s [racon::Polisher::polish] generating consensus [====================] 1.100475 s -[racon::Polisher::] total = 1.387108 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1411 ms) +[racon::Polisher::initialize] loaded target sequences 0.005029 s +[racon::Polisher::initialize] loaded sequences 0.052105 s +[racon::Polisher::initialize] loaded overlaps 0.000364 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.035381 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.059284 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.096074 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.110908 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.143267 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.159133 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.218369 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.251402 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.267099 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.289753 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.309947 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.327141 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.339530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.339544 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.339548 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.348396 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.348409 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.351416 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.363450 s [racon::Polisher::initialize] aligning overlaps [====================] 0.376043 s +[racon::Polisher::initialize] transformed data into windows 0.001319 s +[racon::Polisher::polish] generating consensus [=> ] 0.197097 s [racon::Polisher::polish] generating consensus [==> ] 0.278835 s [racon::Polisher::polish] generating consensus [===> ] 0.373595 s [racon::Polisher::polish] generating consensus [====> ] 0.415400 s [racon::Polisher::polish] generating consensus [=====> ] 0.461886 s [racon::Polisher::polish] generating consensus [======> ] 0.489320 s [racon::Polisher::polish] generating consensus [=======> ] 0.536346 s [racon::Polisher::polish] generating consensus [========> ] 0.590886 s [racon::Polisher::polish] generating consensus [=========> ] 0.662212 s [racon::Polisher::polish] generating consensus [==========> ] 0.763602 s [racon::Polisher::polish] generating consensus [===========> ] 0.888625 s [racon::Polisher::polish] generating consensus [============> ] 1.014618 s [racon::Polisher::polish] generating consensus [=============> ] 1.280671 s [racon::Polisher::polish] generating consensus [==============> ] 1.377287 s [racon::Polisher::polish] generating consensus [===============> ] 1.529530 s [racon::Polisher::polish] generating consensus [================> ] 1.599794 s [racon::Polisher::polish] generating consensus [=================> ] 1.752186 s [racon::Polisher::polish] generating consensus [==================> ] 1.776557 s [racon::Polisher::polish] generating consensus [===================>] 1.932511 s [racon::Polisher::polish] generating consensus [====================] 2.350618 s +[racon::Polisher::] total = 2.805035 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (2870 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.001191 s -[racon::Polisher::initialize] loaded sequences 0.064312 s -[racon::Polisher::initialize] loaded overlaps 0.000574 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.039524 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057896 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.073454 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089452 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.098800 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.101290 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.110210 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.130835 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.134802 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.142090 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.148523 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.162409 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.166458 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.175778 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.186501 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.201023 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.203035 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.214650 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.226051 s [racon::Polisher::initialize] aligning overlaps [====================] 0.227090 s -[racon::Polisher::initialize] transformed data into windows 0.003806 s -[racon::Polisher::polish] generating consensus [=> ] 0.024317 s [racon::Polisher::polish] generating consensus [==> ] 0.046820 s [racon::Polisher::polish] generating consensus [===> ] 0.065304 s [racon::Polisher::polish] generating consensus [====> ] 0.079288 s [racon::Polisher::polish] generating consensus [=====> ] 0.090947 s [racon::Polisher::polish] generating consensus [======> ] 0.101432 s [racon::Polisher::polish] generating consensus [=======> ] 0.111076 s [racon::Polisher::polish] generating consensus [========> ] 0.122366 s [racon::Polisher::polish] generating consensus [=========> ] 0.137515 s [racon::Polisher::polish] generating consensus [==========> ] 0.153537 s [racon::Polisher::polish] generating consensus [===========> ] 0.181835 s [racon::Polisher::polish] generating consensus [============> ] 0.217321 s [racon::Polisher::polish] generating consensus [=============> ] 0.263043 s [racon::Polisher::polish] generating consensus [==============> ] 0.309256 s [racon::Polisher::polish] generating consensus [===============> ] 0.342003 s [racon::Polisher::polish] generating consensus [================> ] 0.364996 s [racon::Polisher::polish] generating consensus [=================> ] 0.395207 s [racon::Polisher::polish] generating consensus [==================> ] 0.412320 s [racon::Polisher::polish] generating consensus [===================>] 0.435680 s [racon::Polisher::polish] generating consensus [====================] 0.526938 s -[racon::Polisher::] total = 0.847110 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (848 ms) +[racon::Polisher::initialize] loaded target sequences 0.000489 s +[racon::Polisher::initialize] loaded sequences 0.054748 s +[racon::Polisher::initialize] loaded overlaps 0.000392 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.039686 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.061397 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.090132 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.107444 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.129818 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.139689 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.161426 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.215529 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.231473 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.237060 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.249703 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.278862 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.289912 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.307853 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.335466 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.358342 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.360719 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.371798 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.386720 s [racon::Polisher::initialize] aligning overlaps [====================] 0.397095 s +[racon::Polisher::initialize] transformed data into windows 0.001422 s +[racon::Polisher::polish] generating consensus [=> ] 0.056680 s [racon::Polisher::polish] generating consensus [==> ] 0.099642 s [racon::Polisher::polish] generating consensus [===> ] 0.135839 s [racon::Polisher::polish] generating consensus [====> ] 0.167401 s [racon::Polisher::polish] generating consensus [=====> ] 0.200714 s [racon::Polisher::polish] generating consensus [======> ] 0.224660 s [racon::Polisher::polish] generating consensus [=======> ] 0.247930 s [racon::Polisher::polish] generating consensus [========> ] 0.270673 s [racon::Polisher::polish] generating consensus [=========> ] 0.290501 s [racon::Polisher::polish] generating consensus [==========> ] 0.340016 s [racon::Polisher::polish] generating consensus [===========> ] 0.392666 s [racon::Polisher::polish] generating consensus [============> ] 0.466400 s [racon::Polisher::polish] generating consensus [=============> ] 0.561354 s [racon::Polisher::polish] generating consensus [==============> ] 0.660103 s [racon::Polisher::polish] generating consensus [===============> ] 0.734136 s [racon::Polisher::polish] generating consensus [================> ] 0.781364 s [racon::Polisher::polish] generating consensus [=================> ] 0.847177 s [racon::Polisher::polish] generating consensus [==================> ] 0.893220 s [racon::Polisher::polish] generating consensus [===================>] 0.934974 s [racon::Polisher::polish] generating consensus [====================] 1.095214 s +[racon::Polisher::] total = 1.563353 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1568 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.062133 s -[racon::Polisher::initialize] loaded sequences 0.036148 s -[racon::Polisher::initialize] loaded overlaps 0.008465 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.038078 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.072233 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.080839 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.093869 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102441 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.114500 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.121134 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.128839 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138357 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.152811 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.164479 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.172414 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183270 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.197262 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.206600 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.219142 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.228496 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.238560 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.242561 s [racon::Polisher::initialize] aligning overlaps [====================] 0.245505 s -[racon::Polisher::initialize] transformed data into windows 0.006697 s -[racon::Polisher::polish] generating consensus [=> ] 0.021790 s [racon::Polisher::polish] generating consensus [==> ] 0.043629 s [racon::Polisher::polish] generating consensus [===> ] 0.065415 s [racon::Polisher::polish] generating consensus [====> ] 0.065781 s [racon::Polisher::polish] generating consensus [=====> ] 0.079083 s [racon::Polisher::polish] generating consensus [======> ] 0.087726 s [racon::Polisher::polish] generating consensus [=======> ] 0.101582 s [racon::Polisher::polish] generating consensus [========> ] 0.104927 s [racon::Polisher::polish] generating consensus [=========> ] 0.131793 s [racon::Polisher::polish] generating consensus [==========> ] 0.143823 s [racon::Polisher::polish] generating consensus [===========> ] 0.154154 s [racon::Polisher::polish] generating consensus [============> ] 0.158237 s [racon::Polisher::polish] generating consensus [=============> ] 0.170750 s [racon::Polisher::polish] generating consensus [==============> ] 0.170950 s [racon::Polisher::polish] generating consensus [===============> ] 0.198760 s [racon::Polisher::polish] generating consensus [================> ] 0.198947 s [racon::Polisher::polish] generating consensus [=================> ] 0.250157 s [racon::Polisher::polish] generating consensus [==================> ] 0.268742 s [racon::Polisher::polish] generating consensus [===================>] 0.284848 s [racon::Polisher::polish] generating consensus [====================] 0.289798 s -[racon::Polisher::] total = 0.649319 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (650 ms) +[racon::Polisher::initialize] loaded target sequences 0.055144 s +[racon::Polisher::initialize] loaded sequences 0.051873 s +[racon::Polisher::initialize] loaded overlaps 0.018661 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.031348 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.051406 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.063730 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.079228 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.095264 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.113285 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.136425 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.152288 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.176098 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.197776 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.216213 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.248385 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.271558 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.296955 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.317636 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.343720 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.360247 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.370512 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.384411 s [racon::Polisher::initialize] aligning overlaps [====================] 0.409482 s +[racon::Polisher::initialize] transformed data into windows 0.002779 s +[racon::Polisher::polish] generating consensus [=> ] 0.041579 s [racon::Polisher::polish] generating consensus [==> ] 0.096832 s [racon::Polisher::polish] generating consensus [===> ] 0.144729 s [racon::Polisher::polish] generating consensus [====> ] 0.144819 s [racon::Polisher::polish] generating consensus [=====> ] 0.164112 s [racon::Polisher::polish] generating consensus [======> ] 0.184869 s [racon::Polisher::polish] generating consensus [=======> ] 0.212948 s [racon::Polisher::polish] generating consensus [========> ] 0.225606 s [racon::Polisher::polish] generating consensus [=========> ] 0.275629 s [racon::Polisher::polish] generating consensus [==========> ] 0.303469 s [racon::Polisher::polish] generating consensus [===========> ] 0.324770 s [racon::Polisher::polish] generating consensus [============> ] 0.333179 s [racon::Polisher::polish] generating consensus [=============> ] 0.368930 s [racon::Polisher::polish] generating consensus [==============> ] 0.369014 s [racon::Polisher::polish] generating consensus [===============> ] 0.414455 s [racon::Polisher::polish] generating consensus [================> ] 0.414705 s [racon::Polisher::polish] generating consensus [=================> ] 0.522568 s [racon::Polisher::polish] generating consensus [==================> ] 0.558765 s [racon::Polisher::polish] generating consensus [===================>] 0.578958 s [racon::Polisher::polish] generating consensus [====================] 0.589695 s +[racon::Polisher::] total = 1.128315 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1129 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.065904 s -[racon::Polisher::initialize] loaded sequences 0.039199 s -[racon::Polisher::initialize] loaded overlaps 0.008902 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.285694 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.438287 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.571961 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.768614 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.939528 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.059510 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.222565 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.433526 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.625522 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.820067 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.968009 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.179056 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.393037 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.568446 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.814222 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.037043 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.233024 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.444749 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.686868 s [racon::Polisher::initialize] aligning overlaps [====================] 3.857341 s -[racon::Polisher::initialize] transformed data into windows 0.091891 s -[racon::Polisher::polish] generating consensus [=> ] 0.944669 s [racon::Polisher::polish] generating consensus [==> ] 1.627743 s [racon::Polisher::polish] generating consensus [===> ] 2.422732 s [racon::Polisher::polish] generating consensus [====> ] 3.040525 s [racon::Polisher::polish] generating consensus [=====> ] 3.706317 s [racon::Polisher::polish] generating consensus [======> ] 4.489879 s [racon::Polisher::polish] generating consensus [=======> ] 5.282589 s [racon::Polisher::polish] generating consensus [========> ] 5.856471 s [racon::Polisher::polish] generating consensus [=========> ] 6.596167 s [racon::Polisher::polish] generating consensus [==========> ] 7.466932 s [racon::Polisher::polish] generating consensus [===========> ] 8.186884 s [racon::Polisher::polish] generating consensus [============> ] 8.979485 s [racon::Polisher::polish] generating consensus [=============> ] 9.662950 s [racon::Polisher::polish] generating consensus [==============> ] 10.397030 s [racon::Polisher::polish] generating consensus [===============> ] 11.194639 s [racon::Polisher::polish] generating consensus [================> ] 11.631101 s [racon::Polisher::polish] generating consensus [=================> ] 12.514776 s [racon::Polisher::polish] generating consensus [==================> ] 13.341284 s [racon::Polisher::polish] generating consensus [===================>] 14.136526 s [racon::Polisher::polish] generating consensus [====================] 14.601363 s -[racon::Polisher::] total = 18.668962 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18670 ms) +[racon::Polisher::initialize] loaded target sequences 0.046223 s +[racon::Polisher::initialize] loaded sequences 0.051064 s +[racon::Polisher::initialize] loaded overlaps 0.015503 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.459459 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.758101 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.034894 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.418558 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.693613 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.953093 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.197195 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.621717 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.027686 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.431685 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.770824 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.091436 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.329424 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.524674 s [racon::Polisher::initialize] aligning overlaps [===============> ] 4.686550 s [racon::Polisher::initialize] aligning overlaps [================> ] 4.776699 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.846654 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.917534 s [racon::Polisher::initialize] aligning overlaps [===================>] 5.092738 s [racon::Polisher::initialize] aligning overlaps [====================] 5.151369 s +[racon::Polisher::initialize] transformed data into windows 0.041607 s +[racon::Polisher::polish] generating consensus [=> ] 0.937308 s [racon::Polisher::polish] generating consensus [==> ] 1.605183 s [racon::Polisher::polish] generating consensus [===> ] 2.290108 s [racon::Polisher::polish] generating consensus [====> ] 2.891213 s [racon::Polisher::polish] generating consensus [=====> ] 3.547545 s [racon::Polisher::polish] generating consensus [======> ] 4.315754 s [racon::Polisher::polish] generating consensus [=======> ] 5.091111 s [racon::Polisher::polish] generating consensus [========> ] 5.653891 s [racon::Polisher::polish] generating consensus [=========> ] 6.379614 s [racon::Polisher::polish] generating consensus [==========> ] 7.232697 s [racon::Polisher::polish] generating consensus [===========> ] 7.941959 s [racon::Polisher::polish] generating consensus [============> ] 8.718370 s [racon::Polisher::polish] generating consensus [=============> ] 9.393332 s [racon::Polisher::polish] generating consensus [==============> ] 10.117727 s [racon::Polisher::polish] generating consensus [===============> ] 10.907877 s [racon::Polisher::polish] generating consensus [================> ] 11.340576 s [racon::Polisher::polish] generating consensus [=================> ] 12.222381 s [racon::Polisher::polish] generating consensus [==================> ] 13.071994 s [racon::Polisher::polish] generating consensus [===================>] 13.866970 s [racon::Polisher::polish] generating consensus [====================] 14.469352 s +[racon::Polisher::] total = 19.778952 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (19780 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.039161 s -[racon::Polisher::initialize] loaded sequences 0.033055 s -[racon::Polisher::initialize] loaded overlaps 0.011616 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.240769 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.386719 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.523385 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.721591 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.892408 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.012412 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.175383 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.386026 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.577817 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.771917 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.919895 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.130520 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.344297 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.519531 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.765207 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.987938 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.183477 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.393603 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.628627 s [racon::Polisher::initialize] aligning overlaps [====================] 3.816000 s -[racon::Polisher::initialize] transformed data into windows 0.013447 s -[racon::Polisher::polish] generating consensus [=> ] 1.284112 s [racon::Polisher::polish] generating consensus [==> ] 2.289269 s [racon::Polisher::polish] generating consensus [===> ] 3.281688 s [racon::Polisher::polish] generating consensus [====> ] 4.039814 s [racon::Polisher::polish] generating consensus [=====> ] 4.949747 s [racon::Polisher::polish] generating consensus [======> ] 5.958307 s [racon::Polisher::polish] generating consensus [=======> ] 7.036818 s [racon::Polisher::polish] generating consensus [========> ] 7.815096 s [racon::Polisher::polish] generating consensus [=========> ] 8.834115 s [racon::Polisher::polish] generating consensus [==========> ] 10.020404 s [racon::Polisher::polish] generating consensus [===========> ] 10.997303 s [racon::Polisher::polish] generating consensus [============> ] 12.079338 s [racon::Polisher::polish] generating consensus [=============> ] 13.089443 s [racon::Polisher::polish] generating consensus [==============> ] 14.103317 s [racon::Polisher::polish] generating consensus [===============> ] 15.137863 s [racon::Polisher::polish] generating consensus [================> ] 15.693103 s [racon::Polisher::polish] generating consensus [=================> ] 17.017405 s [racon::Polisher::polish] generating consensus [==================> ] 18.220087 s [racon::Polisher::polish] generating consensus [===================>] 19.309651 s [racon::Polisher::polish] generating consensus [====================] 20.137363 s -[racon::Polisher::] total = 24.052847 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24054 ms) +[racon::Polisher::initialize] loaded target sequences 0.023493 s +[racon::Polisher::initialize] loaded sequences 0.019849 s +[racon::Polisher::initialize] loaded overlaps 0.008666 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.276117 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.419852 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.551569 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.750581 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.900252 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.031536 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.197821 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.398367 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.628086 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.799266 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.947642 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.154394 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.379241 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.579403 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.785150 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.052701 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.286468 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.507583 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.726068 s [racon::Polisher::initialize] aligning overlaps [====================] 3.846855 s +[racon::Polisher::initialize] transformed data into windows 0.019248 s +[racon::Polisher::polish] generating consensus [=> ] 1.321095 s [racon::Polisher::polish] generating consensus [==> ] 2.318828 s [racon::Polisher::polish] generating consensus [===> ] 3.504373 s [racon::Polisher::polish] generating consensus [====> ] 4.277577 s [racon::Polisher::polish] generating consensus [=====> ] 5.203517 s [racon::Polisher::polish] generating consensus [======> ] 6.206038 s [racon::Polisher::polish] generating consensus [=======> ] 7.403152 s [racon::Polisher::polish] generating consensus [========> ] 8.172269 s [racon::Polisher::polish] generating consensus [=========> ] 9.250500 s [racon::Polisher::polish] generating consensus [==========> ] 10.420114 s [racon::Polisher::polish] generating consensus [===========> ] 11.379819 s [racon::Polisher::polish] generating consensus [============> ] 12.445924 s [racon::Polisher::polish] generating consensus [=============> ] 13.443121 s [racon::Polisher::polish] generating consensus [==============> ] 14.446272 s [racon::Polisher::polish] generating consensus [===============> ] 15.686627 s [racon::Polisher::polish] generating consensus [================> ] 16.263629 s [racon::Polisher::polish] generating consensus [=================> ] 17.608685 s [racon::Polisher::polish] generating consensus [==================> ] 18.809664 s [racon::Polisher::polish] generating consensus [===================>] 19.900809 s [racon::Polisher::polish] generating consensus [====================] 20.744376 s +[racon::Polisher::] total = 24.665702 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24667 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.028237 s -[racon::Polisher::initialize] loaded sequences 0.028185 s -[racon::Polisher::initialize] loaded overlaps 0.006915 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.271888 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.418246 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.552321 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.739633 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.873001 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.999808 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.156446 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.367262 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.582814 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.758068 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.906707 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.122190 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.357224 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.556215 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.793747 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.014808 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.201049 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.436916 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.679323 s [racon::Polisher::initialize] aligning overlaps [====================] 3.811465 s -[racon::Polisher::initialize] transformed data into windows 0.084553 s -[racon::Polisher::polish] generating consensus [=> ] 0.936585 s [racon::Polisher::polish] generating consensus [==> ] 1.608801 s [racon::Polisher::polish] generating consensus [===> ] 2.345123 s [racon::Polisher::polish] generating consensus [====> ] 2.956375 s [racon::Polisher::polish] generating consensus [=====> ] 3.617354 s [racon::Polisher::polish] generating consensus [======> ] 4.394873 s [racon::Polisher::polish] generating consensus [=======> ] 5.182541 s [racon::Polisher::polish] generating consensus [========> ] 5.753214 s [racon::Polisher::polish] generating consensus [=========> ] 6.489222 s [racon::Polisher::polish] generating consensus [==========> ] 7.353217 s [racon::Polisher::polish] generating consensus [===========> ] 8.068331 s [racon::Polisher::polish] generating consensus [============> ] 8.853566 s [racon::Polisher::polish] generating consensus [=============> ] 9.532741 s [racon::Polisher::polish] generating consensus [==============> ] 10.303136 s [racon::Polisher::polish] generating consensus [===============> ] 11.106456 s [racon::Polisher::polish] generating consensus [================> ] 11.567897 s [racon::Polisher::polish] generating consensus [=================> ] 12.421109 s [racon::Polisher::polish] generating consensus [==================> ] 13.239146 s [racon::Polisher::polish] generating consensus [===================>] 13.983628 s [racon::Polisher::polish] generating consensus [====================] 14.617710 s -[racon::Polisher::] total = 18.580372 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18581 ms) -[----------] 10 tests from RaconPolishingTest (67764 ms total) +[racon::Polisher::initialize] loaded target sequences 0.026571 s +[racon::Polisher::initialize] loaded sequences 0.026553 s +[racon::Polisher::initialize] loaded overlaps 0.007702 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.297036 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.442356 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.565890 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.760150 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.894092 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.021158 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.178085 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.389319 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.605311 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.780630 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.929322 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.153195 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.378768 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.578181 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.815918 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.037352 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.223439 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.459600 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.702196 s [racon::Polisher::initialize] aligning overlaps [====================] 3.846263 s +[racon::Polisher::initialize] transformed data into windows 0.047052 s +[racon::Polisher::polish] generating consensus [=> ] 0.940741 s [racon::Polisher::polish] generating consensus [==> ] 1.611004 s [racon::Polisher::polish] generating consensus [===> ] 2.337977 s [racon::Polisher::polish] generating consensus [====> ] 2.941298 s [racon::Polisher::polish] generating consensus [=====> ] 3.599039 s [racon::Polisher::polish] generating consensus [======> ] 4.431090 s [racon::Polisher::polish] generating consensus [=======> ] 5.220722 s [racon::Polisher::polish] generating consensus [========> ] 5.802500 s [racon::Polisher::polish] generating consensus [=========> ] 6.503836 s [racon::Polisher::polish] generating consensus [==========> ] 7.330046 s [racon::Polisher::polish] generating consensus [===========> ] 8.034518 s [racon::Polisher::polish] generating consensus [============> ] 8.926627 s [racon::Polisher::polish] generating consensus [=============> ] 9.682710 s [racon::Polisher::polish] generating consensus [==============> ] 10.479945 s [racon::Polisher::polish] generating consensus [===============> ] 11.310251 s [racon::Polisher::polish] generating consensus [================> ] 11.785348 s [racon::Polisher::polish] generating consensus [=================> ] 12.662594 s [racon::Polisher::polish] generating consensus [==================> ] 13.502027 s [racon::Polisher::polish] generating consensus [===================>] 14.261558 s [racon::Polisher::polish] generating consensus [====================] 14.620088 s +[racon::Polisher::] total = 18.576984 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18577 ms) +[----------] 10 tests from RaconPolishingTest (74964 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (67782 ms total) +[==========] 15 tests from 2 test suites ran. (74995 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp @@ -766,8 +802,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-4_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-4_arm64.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -775,12 +811,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3834828/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3401299 and its subdirectories -I: Current time: Sun Oct 12 05:05:17 -12 2025 -I: pbuilder-time-stamp: 1760288717 +I: removing directory /srv/workspace/pbuilder/3834828 and its subdirectories +I: Current time: Sun Nov 15 13:30:39 +14 2026 +I: pbuilder-time-stamp: 1794699039