Diff of the two buildlogs: -- --- b1/build.log 2025-04-17 08:54:58.589997554 +0000 +++ b2/build.log 2025-04-17 09:25:08.667311357 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 20 03:03:05 -12 2026 -I: pbuilder-time-stamp: 1779289385 +I: Current time: Thu Apr 17 22:55:06 +14 2025 +I: pbuilder-time-stamp: 1744880106 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -43,52 +43,84 @@ dpkg-source: info: applying auto-gitignore I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3233477/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 17 08:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='82c84049d5cb4b7a99c1910715602302' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3233477' - PS1='# ' - PS2='> ' + INVOCATION_ID=e2b7d773b5de4cdda189c6ba227fd836 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1550631 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FDOGrFIV/pbuilderrc_5C9N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FDOGrFIV/b1 --logfile b1/build.log sra-sdk_3.2.1+dfsg-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FDOGrFIV/pbuilderrc_eYFV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FDOGrFIV/b2 --logfile b2/build.log sra-sdk_3.2.1+dfsg-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3233477/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -502,7 +534,7 @@ Get: 336 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 337 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.0-1.1 [738 kB] Get: 338 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 269 MB in 1s (189 MB/s) +Fetched 269 MB in 4s (75.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) @@ -1611,8 +1643,8 @@ Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed May 20 15:04:47 UTC 2026. -Universal Time is now: Wed May 20 15:04:47 UTC 2026. +Local time is now: Thu Apr 17 08:57:31 UTC 2025. +Universal Time is now: Thu Apr 17 08:57:31 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -2108,7 +2140,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sra-sdk_3.2.1+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sra-sdk_3.2.1+dfsg-4_source.changes dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 3.2.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -2233,8 +2269,8 @@ RE2_FOUND=TRUE --- Configuring done (6.4s) --- Generating done (1.6s) +-- Configuring done (9.6s) +-- Generating done (2.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -2249,7 +2285,7 @@ -- Build files have been written to: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' jh_linkjars -O--buildsystem=cmake -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' @@ -2262,111 +2298,227 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared/CMakeFiles/tk-version.dir/DependInfo.cmake "--color=" make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/DependInfo.cmake "--color=" make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/DependInfo.cmake "--color=" make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend +make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" -make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"shared\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -MF CMakeFiles/tk-version.dir/toolkit.vers.c.o.d -o CMakeFiles/tk-version.dir/toolkit.vers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/toolkit.vers.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build [ 0%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o +[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"shared\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -MF CMakeFiles/tk-version.dir/toolkit.vers.c.o.d -o CMakeFiles/tk-version.dir/toolkit.vers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/toolkit.vers.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NCBI-NGS.c -[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o +make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build [ 0%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_String.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NCBI-NGS.c [ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend [ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -[ 0%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_PileupEvent.c -[ 1%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-py\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py/py_Manager.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_Manager.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend +[ 1%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -MF CMakeFiles/ngs.dir/CSRA1_Pileup.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Pileup.c +[ 1%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-py\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py/py_Manager.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" +[ 1%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c [ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -[ 1%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -[ 1%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_String.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadCollection.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp [ 1%] Linking C static library ../ilib/libtk-version.a +[ 1%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cmake -P CMakeFiles/tk-version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cmake -E cmake_link_script CMakeFiles/tk-version.dir/link.txt --verbose=1 -[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c /usr/bin/ar qc ../ilib/libtk-version.a "CMakeFiles/tk-version.dir/toolkit.vers.c.o" /usr/bin/ranlib ../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Reference.c +[ 1%] Built target tk-version +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" [ 1%] Linking C static library ../../../ilib/libngs-py.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -P CMakeFiles/ngs-py.dir/cmake_clean_target.cmake +[ 1%] Linking C static library ../../../ilib/libngs-jni.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 +[ 1%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp +/usr/bin/ar qc ../../../ilib/libngs-py.a "CMakeFiles/ngs-py.dir/py_Manager.c.o" +/usr/bin/ranlib ../../../ilib/libngs-py.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +/usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +/usr/bin/ranlib ../../../ilib/libngs-jni.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target ngs-py +make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend +[ 1%] Built target ngs-jni make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 1%] Built target tk-version cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -P CMakeFiles/ngs-py.dir/cmake_clean_target.cmake make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/DependInfo.cmake "--color=" -[ 1%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadCollectionItf.cpp -[ 1%] Linking C static library ../../../ilib/libngs-jni.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake [ 1%] Building Java objects for ngs-java.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS -/usr/bin/ar qc ../../../ilib/libngs-py.a "CMakeFiles/ngs-py.dir/py_Manager.c.o" -/usr/bin/ranlib ../../../ilib/libngs-py.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 -[ 1%] Built target ngs-py cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -h ./jni @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_sources +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Read.c +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c +[ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceSequence.cpp +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Statistics.c +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Read.c +[ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o +[ 2%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c +[ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c +[ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadCollection.c +[ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp +[ 2%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp +[ 3%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Statistics.c +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Pileup.c +[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Alignment.c +[ 4%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Reference.c +[ 4%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Read.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Fragment.c +[ 4%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o +[ 4%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp +[ 4%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Cursor.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Refcount.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_String.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Id.c +ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal + protected void finalize () + ^ +[ 5%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp +[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c +[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlob.c +[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c +[ 6%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o +[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Reference.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c +[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c +[ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp +[ 6%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o +[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/VByteBlob.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp +[ 7%] Linking C static library ../../../ilib/libngs.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o CMakeFiles/ngs.dir/NGS_Reference.c.o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Read.c.o CMakeFiles/ngs.dir/NGS_Fragment.c.o CMakeFiles/ngs.dir/NGS_Cursor.c.o CMakeFiles/ngs.dir/NGS_Refcount.c.o CMakeFiles/ngs.dir/NGS_String.c.o CMakeFiles/ngs.dir/NGS_Id.c.o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o CMakeFiles/ngs.dir/VByteBlob.c.o +/usr/bin/ranlib ../../../ilib/libngs.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target ngs make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" @@ -2374,112 +2526,97 @@ make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javadoc -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs -/usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -/usr/bin/ranlib ../../../ilib/libngs-jni.a +[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o +[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp +[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp +Note: Some input files use or override a deprecated API. +Note: Recompile with -Xlint:deprecation for details. +1 warning +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java +[ 7%] Generating CMakeFiles/ngs-java.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +[ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp +[ 8%] Creating Java archive ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar @java_class_filelist +[ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp +[ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +Loading source files for package gov.nih.nlm.ncbi.ngs... +Loading source files for package ngs... make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 1%] Built target ngs-jni +[ 8%] Built target ngs-java make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml/CMakeFiles/kxml.dir/DependInfo.cmake "--color=" +[ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o +[ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp +[ 9%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o +[ 10%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xml.c.o -MF CMakeFiles/kxml.dir/xml.c.o.d -o CMakeFiles/kxml.dir/xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xml.c -[ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c -[ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX 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ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupItf.cpp -[ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentItf.cpp -[ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Reference.c -[ 2%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp -[ 3%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp -[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp -[ 3%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc-parsexml.c -[ 3%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp -[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Read.c -[ 3%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp -Loading source files for package gov.nih.nlm.ncbi.ngs... -Loading source files for package ngs... -[ 3%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Reference.cpp -[ 3%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c -[ 3%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -cd 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CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp -[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp Constructing Javadoc information... -[ 3%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp -[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c -[ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Read.c -[ 4%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp -[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c -ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal - protected void finalize () - ^ -[ 5%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp -[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c -[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadCollection.c +[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp Creating destination directory: "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/" -[ 5%] Linking C static library ../../ilib/libkxml.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake -[ 5%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 +[ 10%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc-parsexml.c Building index for all the packages and classes... -[ 5%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp Standard Doclet version 21.0.7-ea+8-Debian-1 Building tree for all the packages and classes... -/usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o -/usr/bin/ranlib ../../ilib/libkxml.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 6%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -[ 6%] Built target kxml -make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp -[ 6%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader/CMakeFiles/loader.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -[ 6%] Building C object libs/loader/CMakeFiles/loader.dir/progressbar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Statistics.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/progressbar.c.o -MF CMakeFiles/loader.dir/progressbar.c.o.d -o CMakeFiles/loader.dir/progressbar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/progressbar.c -[ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c +[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp +[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp +[ 10%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -MF CMakeFiles/kxml.dir/xtoc.c.o.d -o CMakeFiles/kxml.dir/xtoc.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc.c +[ 11%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ @@ -2493,6 +2630,7 @@ static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment +[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o static int minMapQuality = 4; // pass alignments with mappingQuality >= param ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:133: warning: no comment @@ -2508,19 +2646,16 @@ static int primaryAlignment = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:139: warning: no comment +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp static int secondaryAlignment = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c -[ 6%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-file.c -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Pileup.c -[ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp +[ 11%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrorMsg.cpp +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrBlock.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description @@ -2536,6 +2671,8 @@ public ErrorMsg ( ErrorMsg obj ) ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... +[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment @@ -2558,15 +2695,8 @@ public class NGS ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment -[ 6%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp public static void main(String[] args) { ^ -[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c -[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Alignment.c -[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string @@ -2574,19 +2704,12 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Reference.c -[ 8%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-meta.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... -[ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description -[ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o * @return base at current Reference position -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp +[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o ^ -[ 8%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; @@ -2633,13 +2756,12 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ +[ 13%] Linking CXX static library ../../../../ilib/libngs-bind-python.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -P CMakeFiles/ngs-bind-python.dir/cmake_clean_target.cmake Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... -[ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... -[ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:35: warning: no comment public interface Read ^ @@ -2655,8 +2777,6 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; ^ -[ 8%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/queue-file.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description * @param spec the name of a contained read group @@ -2664,26 +2784,38 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ -Note: Some input files use or override a deprecated API. -Note: Recompile with -Xlint:deprecation for details. -1 warning +/usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-python.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target ngs-bind-python +make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader/CMakeFiles/loader.dir/DependInfo.cmake "--color=" +[ 13%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... +[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StatisticsItf.cpp +[ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp +[ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment public interface ReadIterator ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... -[ 8%] Generating CMakeFiles/ngs-java.dir/java_class_filelist -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +[ 14%] Building C object libs/loader/CMakeFiles/loader.dir/progressbar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/progressbar.c.o -MF CMakeFiles/loader.dir/progressbar.c.o.d -o CMakeFiles/loader.dir/progressbar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/progressbar.c +[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... -[ 8%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/alignment-writer.c -[ 9%] Creating Java archive ngs-java.jar Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar @java_class_filelist /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment static int int64 = 2; ^ @@ -2697,234 +2829,113 @@ static int uint64 = 3; ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... +[ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-tree.html... +[ 14%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index.html... Building index for all classes... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... -[ 9%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allpackages-index.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-reader.c -[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp -[ 10%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index-all.html... -[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/search.html... -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... -52 warnings -[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c +[ 14%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-file.c +/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" +/usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 10%] Built target ngs-doc_javadoc +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index-all.html... +[ 14%] Linking C static library ../../ilib/libkxml.a +[ 14%] Built target ngs-adapt-c++ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/depend -[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Read.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/DependInfo.cmake "--color=" -[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp -[ 10%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/search.html... make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o +52 warnings +[ 14%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/vdb-sqlite\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp -[ 11%] Built target ngs-java -[ 11%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/vdb-sqlite\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3vdb.c -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Fragment.c -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp -[ 11%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Cursor.c -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Refcount.c -[ 11%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp -[ 11%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp -[ 11%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_String.c -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Id.c -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c -[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlob.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp -[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c -[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp -[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c -[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp -[ 12%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c -[ 12%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StatisticsItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp -[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/VByteBlob.c -[ 12%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF CMakeFiles/loader.dir/mmarray.c.o.d -o CMakeFiles/loader.dir/mmarray.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/mmarray.c -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp -[ 12%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/reference-writer.c -[ 12%] Linking C static library ../../../ilib/libngs.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o CMakeFiles/ngs.dir/NGS_Reference.c.o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Read.c.o CMakeFiles/ngs.dir/NGS_Fragment.c.o CMakeFiles/ngs.dir/NGS_Cursor.c.o CMakeFiles/ngs.dir/NGS_Refcount.c.o CMakeFiles/ngs.dir/NGS_String.c.o CMakeFiles/ngs.dir/NGS_Id.c.o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o CMakeFiles/ngs.dir/VByteBlob.c.o -/usr/bin/ranlib ../../../ilib/libngs.a +/usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o +/usr/bin/ranlib ../../ilib/libkxml.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 12%] Built target ngs +[ 14%] Built target kxml make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" +[ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 12%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReadCollection.cpp -[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp -[ 13%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp -[ 13%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp -[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp -[ 13%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp -[ 13%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o CMakeFiles/loader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/sequence-writer.c -[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp -[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp -[ 13%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrorMsg.cpp -[ 13%] Linking C static library ../../ilib/libloader.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 -[ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp -/usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" -/usr/bin/ranlib ../../ilib/libloader.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 14%] Built target loader +[ 14%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReadCollection.cpp +[ 14%] Built target ngs-doc_javadoc make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 14%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp +[ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp [ 14%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -MF CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o.d -o CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_makedb.cpp +[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp [ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o +[ 15%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-meta.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp -[ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o +[ 15%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/VTable.cpp -[ 15%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp [ 15%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp -[ 15%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp [ 15%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp +[ 15%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/queue-file.c +[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp +[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp +[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp +[ 15%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o +[ 15%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/alignment-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp [ 15%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp -[ 15%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake +[ 15%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp +[ 15%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp +[ 15%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-reader.c +[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp [ 15%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Read.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 -[ 16%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp -[ 16%] Linking CXX static library ../../../../ilib/libngs-bind-java.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" -/usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target ngs-adapt-c++ -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" -/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" -/usr/bin/ranlib ../../../../ilib/libngs-bind-java.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target ngs-bind-java -make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose/CMakeFiles/diagnose.dir/DependInfo.cmake "--color=" -[ 16%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF CMakeFiles/ascp.dir/ascp.c.o.d -o CMakeFiles/ascp.dir/ascp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/ascp.c -[ 16%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF CMakeFiles/diagnose.dir/diagnose.c.o.d -o CMakeFiles/diagnose.dir/diagnose.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/diagnose.c +[ 16%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp +[ 16%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-writer.c +[ 16%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp +[ 16%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp: In member function 'void ncbi::ngs::vdb::FragmentBlob::GetFragmentInfo(uint64_t, std::string*, uint64_t*, uint64_t*, bool*) const': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:125:24: warning: ignoring return value of 'bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', declared with attribute 'nodiscard' [-Wunused-result] 125 | fragId . empty (); @@ -2937,141 +2948,275 @@ /usr/include/c++/14/bits/basic_string.h:1231:7: note: declared here 1231 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 16%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp +[ 16%] Linking CXX executable ../../../test-bin/ngs-makedb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 [ 16%] Linking CXX static library ../../../ilib/libngs-disp.a -[ 16%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/endpoint.c -[ 16%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 +[ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReference.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-makedb.dir/link.d "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 16%] Built target ngs-makedb +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" /usr/bin/ranlib ../../../ilib/libngs-disp.a -[ 16%] Linking CXX executable ../../../test-bin/ngs-makedb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 16%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF CMakeFiles/ascp.dir/ascp.c.o.d -o CMakeFiles/ascp.dir/ascp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/ascp.c [ 16%] Built target ngs-disp -make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/depend -[ 16%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp +make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema/CMakeFiles/sra.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose/CMakeFiles/diagnose.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/build +make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReference.cpp -[ 16%] Building CXX object libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -MF CMakeFiles/sra.dir/SraSchema.cpp.o.d -o CMakeFiles/sra.dir/SraSchema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema/SraSchema.cpp -[ 16%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-makedb.dir/link.d "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 17%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 16%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp +[ 16%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF CMakeFiles/diagnose.dir/diagnose.c.o.d -o CMakeFiles/diagnose.dir/diagnose.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/diagnose.c +[ 16%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp +[ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlob.cpp +[ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp +[ 17%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp +[ 18%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/unix/connect.c -[ 17%] Linking CXX static library ../../ilib/libsra.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -P CMakeFiles/sra.dir/cmake_clean_target.cmake -[ 17%] Built target ngs-makedb -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o +[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp +[ 18%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbAlignment.cpp +[ 18%] Linking CXX static library ../../../../ilib/libngs-bind-java.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-java.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema/CMakeFiles/sra.dir/DependInfo.cmake "--color=" +[ 18%] Built target ngs-bind-java make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search/CMakeFiles/ksrch.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 18%] Building CXX object libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o [ 18%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -/usr/bin/ar qc ../../ilib/libsra.a CMakeFiles/sra.dir/SraSchema.cpp.o -/usr/bin/ranlib ../../ilib/libsra.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o CMakeFiles/ksrch.dir/agrep-dp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-dp.c -[ 18%] Built target sra -[ 18%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp +[ 19%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp +[ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/NGS-VDB.cpp +[ 19%] Linking CXX static library ../../ilib/libsra.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -P CMakeFiles/sra.dir/cmake_clean_target.cmake make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/CMakeFiles/general-writer.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/build -[ 19%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o CMakeFiles/ksrch.dir/agrep-myers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myers.c -[ 19%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o CMakeFiles/general-writer.dir/general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/general-writer.cpp -make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd 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libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF 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CMakeFiles/ascp.dir/cmake_clean_target.cmake -/usr/bin/ar qc ../../../../ilib/libngs-bind-c++.a "CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" -/usr/bin/ranlib 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-wumanber.c -[ 19%] Built target ngs-bind-c++ make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/depend +/usr/bin/ar qc ../../ilib/libsra.a CMakeFiles/sra.dir/SraSchema.cpp.o +/usr/bin/ranlib ../../ilib/libsra.a make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 19%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o CMakeFiles/general-writer.dir/general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/general-writer.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/ar qc ../../ilib/libascp.a CMakeFiles/ascp.dir/ascp.c.o CMakeFiles/ascp.dir/unix/connect.c.o "CMakeFiles/ascp.dir/linux/ascp-path.c.o" -/usr/bin/ranlib ../../ilib/libascp.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 20%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -MF CMakeFiles/samview.dir/bam.c.o.d -o CMakeFiles/samview.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c -[ 20%] Built target ascp +[ 19%] Built target sra make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp +[ 20%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c [ 21%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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-D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/samview.c +[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+args.c +[ 21%] Linking CXX static library ../../ilib/libngs-vdb.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake +[ 21%] Linking CXX static library ../../../../ilib/libngs-bind-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -P CMakeFiles/ngs-bind-c++.dir/cmake_clean_target.cmake +[ 21%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb 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libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF 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"CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-c++.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target ngs-vdb +make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+meta.dir/DependInfo.cmake "--color=" +[ 21%] Built target ngs-bind-c++ +make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/depend +[ 21%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT 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-rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+print.c +[ 21%] Linking CXX executable ../../../bin/dump-blob-boundaries +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-blob-boundaries.dir/link.txt --verbose=1 +[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c +[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+.c +[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX 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+cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-aho.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-blob-boundaries dump-blob-boundaries.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3.2.1 dump-blob-boundaries.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target dump-blob-boundaries +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o CMakeFiles/sra-sort.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c +[ 21%] Linking CXX executable ../../../bin/kar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar.dir/link.txt --verbose=1 +[ 21%] Linking C static library ../../ilib/libloader.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-boyermoore.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar.dir/link.d "CMakeFiles/kar.dir/kar-path.c.o" "CMakeFiles/kar.dir/kar-args.c.o" CMakeFiles/kar.dir/kar.c.o -o ../../../bin/kar /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar.3.2.1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar kar.3.2.1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] + 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here + 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, + | ^~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3.2.1 kar.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3 kar +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +/usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" +/usr/bin/ranlib ../../ilib/libloader.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target kar +[ 21%] Building C object libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/utf8-like-int-codec.c +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/depend [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -MF CMakeFiles/ksrch.dir/fgrep-dumb.c.o.d -o CMakeFiles/ksrch.dir/fgrep-dumb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-dumb.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target loader +make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/DependInfo.cmake "--color=" +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -MF CMakeFiles/sra-sort.dir/membank.c.o.d -o CMakeFiles/sra-sort.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -MF CMakeFiles/fastqloader.dir/spot-assembler.c.o.d -o CMakeFiles/fastqloader.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c +[ 21%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -MF CMakeFiles/sra-sort-cg.dir/membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c +[ 21%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -MF CMakeFiles/sra-sort.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c +[ 21%] Linking CXX executable ../../../bin/kar+meta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+meta.dir/link.txt --verbose=1 [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c -[ 21%] Linking CXX static library ../../../../ilib/libngs-bind-python.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -P CMakeFiles/ngs-bind-python.dir/cmake_clean_target.cmake [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF CMakeFiles/ksrch.dir/search.c.o.d -o CMakeFiles/ksrch.dir/search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/search.c +[ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c +[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c +[ 24%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -MF CMakeFiles/fastqloader.dir/sequence-writer.c.o.d -o CMakeFiles/fastqloader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c In function 'nss_unary_expr', inlined from 'nss_expr' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1387:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] @@ -3089,7 +3234,6 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1389:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1389 | e -> sub . expr = NULL; | ^ -[ 21%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by 'malloc' 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3151,7 +3295,6 @@ 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c: In function 'nss_expr': -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbAlignment.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1461:19: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[24]' [-Warray-bounds=] 1461 | e -> boolean . type = type_OP; | ^~ @@ -3170,1519 +3313,856 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 -[ 21%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/NGS-VDB.cpp -/usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" -/usr/bin/ranlib ../../../../ilib/libngs-bind-python.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target ngs-bind-python -make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] - 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here - 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, - | ^~~~~~~~~~~~~~~~~ -[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -MF CMakeFiles/kar+.dir/kar-path.c.o.d -o CMakeFiles/kar+.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-path.c -[ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/sw-search.c -[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+args.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] - 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here - 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, - | ^~~~~~~~~~~~~~~~~ -[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+print.c -[ 21%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -MF CMakeFiles/bam-load.dir/alignment-writer.c.o.d -o CMakeFiles/bam-load.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/alignment-writer.c -[ 21%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c -[ 22%] Linking C static library ../../ilib/libdiagnose.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake -[ 22%] Linking CXX executable ../../../bin/kar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar.dir/link.txt --verbose=1 -[ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 -[ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/reference-writer.c -/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o -/usr/bin/ranlib ../../ilib/libdiagnose.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sequence-writer.c -[ 22%] Built target diagnose -make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+meta.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar.dir/link.d "CMakeFiles/kar.dir/kar-path.c.o" "CMakeFiles/kar.dir/kar-args.c.o" CMakeFiles/kar.dir/kar.c.o -o ../../../bin/kar /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar kar.3.2.1 -[ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3.2.1 kar.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3 kar -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 22%] Built target kar -[ 22%] Linking C static library ../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake -[ 22%] Linking CXX static library ../../ilib/libngs-vdb.a -make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake -[ 23%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -MF CMakeFiles/bam-load.dir/loader-imp.c.o.d -o CMakeFiles/bam-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -MF CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o.d -o CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dump-blob-boundaries.c -[ 23%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/mem-bank.cpp -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/DependInfo.cmake "--color=" -/usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" -/usr/bin/ranlib ../../ilib/libngs-vdb.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 23%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -/usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" -/usr/bin/ranlib ../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -MF CMakeFiles/bam-load.dir/low-match-count.cpp.o.d -o CMakeFiles/bam-load.dir/low-match-count.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/low-match-count.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build -[ 23%] Built target ngs-vdb -make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 23%] Built target ksrch -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/DependInfo.cmake "--color=" -make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/DependInfo.cmake "--color=" -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c -[ 23%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -MF CMakeFiles/fastqloader.dir/spot-assembler.c.o.d -o CMakeFiles/fastqloader.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c -[ 23%] Linking CXX executable ../../../bin/dump-blob-boundaries -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-blob-boundaries.dir/link.txt --verbose=1 -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c -[ 23%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -MF CMakeFiles/kar+meta.dir/kar+meta.c.o.d -o CMakeFiles/kar+meta.dir/kar+meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+meta.c -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c -[ 23%] Linking CXX static library ../../ilib/libgeneral-writer.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -MF CMakeFiles/sra-sort.dir/membank.c.o.d -o CMakeFiles/sra-sort.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -MF CMakeFiles/sra-sort-cg.dir/membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c -/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" -/usr/bin/ranlib ../../ilib/libgeneral-writer.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-blob-boundaries.dir/link.d "CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o" -o ../../../bin/dump-blob-boundaries /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f dump-blob-boundaries.3.2.1 -[ 23%] Built target general-writer -make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-blob-boundaries dump-blob-boundaries.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.py.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3.2.1 dump-blob-boundaries.3 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries -make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/sharq.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq.py -[ 23%] Built target dump-blob-boundaries -make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 23%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -MF CMakeFiles/sra-sort.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c -[ 23%] Built target sharq.py -make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" -[ 23%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -[ 24%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -MF CMakeFiles/sff-load.dir/pstring.c.o.d -o CMakeFiles/sff-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 24%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 25%] Linking CXX executable ../../../bin/kar+ -[ 25%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:3599:44: warning: "/*" within comment [-Wcomment] - 3599 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:4332:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4332 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); - | ^~~~~~~~ -[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c -[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -[ 26%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c -[ 26%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -MF CMakeFiles/sff-load.dir/common-xml.c.o.d -o CMakeFiles/sff-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+.dir/link.d "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar+.3.2.1 -[ 26%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/samview.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar+ kar+.3.2.1 -[ 26%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+meta.dir/link.d CMakeFiles/kar+meta.dir/kar+util.c.o CMakeFiles/kar+meta.dir/kar+meta.c.o -o ../../../bin/kar+meta /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar+meta.3.2.1 -[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar+meta kar+meta.3.2.1 cd 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-D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -cd 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -MF CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c -[ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c -[ 27%] Linking CXX executable ../../../bin/samview -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -MF CMakeFiles/sff-load.dir/experiment-xml.c.o.d -o CMakeFiles/sff-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview.dir/link.d CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f samview.3.2.1 -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv samview samview.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3.2.1 samview.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3 samview -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c -[ 28%] Built target samview -make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/helicos-load.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -MF CMakeFiles/abi-load.dir/experiment-xml.c.o.d -o CMakeFiles/abi-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o CMakeFiles/srf-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3DefaultRowEst': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~ -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:11540: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~~~~~ -[ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] -102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); - | ^~ -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' -102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); - | ^~~~~~ -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o CMakeFiles/sff-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c -[ 28%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 29%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o -MF CMakeFiles/sra-sort.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c -[ 29%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -MF CMakeFiles/fastq-load.dir/run-xml.c.o.d -o CMakeFiles/fastq-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 29%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c -[ 29%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c -[ 30%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c -[ 30%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c -[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c -[ 30%] Linking C static library ../../../ilib/libfastqloader.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o -/usr/bin/ranlib ../../../ilib/libfastqloader.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 30%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 30%] Built target fastqloader -make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/depend +[ 25%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o -MF CMakeFiles/sra-sort.dir/except.c.o.d -o CMakeFiles/sra-sort.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c +[ 25%] Built target kar+meta +[ 25%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o +make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/DependInfo.cmake "--color=" -[ 30%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.py.dir/DependInfo.cmake "--color=" +[ 25%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/sw-search.c +[ 25%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/endpoint.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build -[ 30%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o +make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c -[ 31%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -MF CMakeFiles/pacbio-loadxml.dir/pstring.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -[ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c -[ 32%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 32%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 32%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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-D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/common-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -MF CMakeFiles/fastq-load.dir/sra-writer.c.o.d -o CMakeFiles/fastq-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -MF CMakeFiles/illumina-load.dir/loader-file.c.o.d -o CMakeFiles/illumina-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -MF CMakeFiles/abi-load.dir/loader.c.o.d -o CMakeFiles/abi-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -MF CMakeFiles/helicos-load.dir/sra-writer.c.o.d -o CMakeFiles/helicos-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -MF CMakeFiles/illumina-load.dir/loader.c.o.d -o CMakeFiles/illumina-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:113: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: 'sha1_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 214 | class sha1_filter : public sha_filter - | ^~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:218:7: warning: 'sha224_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 218 | class sha224_filter : public sha_filter - | ^~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: 'sha256_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 222 | class sha256_filter : public sha_filter - | ^~~~~~~~~~~~~ -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-illumina.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sff-fmt.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c -[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 34%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 35%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c -[ 35%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c -[ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c -[ 35%] Linking CXX executable ../../../bin/sff-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-illumina.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/absolid-fmt.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-load.dir/link.d "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sff-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sff-load sff-load.3.2.1 -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c -[ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3.2.1 sff-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3 sff-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/sharq.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq.py make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:100: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here - 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 36%] Built target sff-load +[ 25%] Built target sharq.py make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/DependInfo.cmake "--color=" -[ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-absolid.c -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c -[ 36%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o +[ 25%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o +[ 26%] Linking C static library ../../ilib/libdiagnose.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c +[ 26%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX 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CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5arrayfile.c -[ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c -[ 36%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-helicos.c -[ 36%] Linking CXX executable ../../../bin/abi-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 -[ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -cd 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -MF CMakeFiles/sra-sort.dir/run.c.o.d -o CMakeFiles/sra-sort.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c -[ 38%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/helicos-fmt.c -[ 39%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c -[ 39%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-absolid.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/abi-load.dir/link.d "CMakeFiles/abi-load.dir/pstring.c.o" "CMakeFiles/abi-load.dir/common-xml.c.o" "CMakeFiles/abi-load.dir/experiment-xml.c.o" "CMakeFiles/abi-load.dir/run-xml.c.o" "CMakeFiles/abi-load.dir/loader-file.c.o" "CMakeFiles/abi-load.dir/loader-fmt.c.o" "CMakeFiles/abi-load.dir/sra-writer.c.o" "CMakeFiles/abi-load.dir/loader.c.o" "CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f abi-load.3.2.1 -[ 39%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-load.3 abi-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+.dir/link.d "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar+.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar+ kar+.3.2.1 +/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o +/usr/bin/ranlib ../../ilib/libdiagnose.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 39%] Built target abi-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+.3.2.1 kar+.3 +[ 26%] Built target diagnose make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+.3 kar+ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load/CMakeFiles/cg-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build -[ 39%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/fastq-fmt.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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-D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o -MF CMakeFiles/sra-sort-cg.dir/run.c.o.d -o CMakeFiles/sra-sort-cg.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c -[ 40%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-context.c -[ 40%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pacbio-fmt.c -[ 40%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c: In function 'DB_Fini': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { - | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c -[ 40%] Linking CXX executable ../../../bin/srf-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 -[ 40%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -MF CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-tools.c -[ 40%] Linking CXX executable ../../../bin/pacbio-loadxml -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 -[ 40%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c -[ 41%] Linking CXX executable ../../../bin/illumina-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/helicos-load.dir/link.d "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f helicos-load.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srf-load.dir/link.d "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srf-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv helicos-load helicos-load.3.2.1 -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srf-load srf-load.3.2.1 -[ 41%] Linking CXX executable ../../../bin/fastq-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3.2.1 srf-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3.2.1 helicos-load.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-loadxml.dir/link.d "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-loadxml.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3 srf-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.2.1 pacbio-loadxml.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-zmw.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target srf-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml -make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/depend -[ 41%] Built target helicos-load -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/CMakeFiles/general-loader.dir/DependInfo.cmake "--color=" +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -MF CMakeFiles/sra-sort-cg.dir/except.c.o.d -o CMakeFiles/sra-sort-cg.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c +[ 26%] Built target kar+ make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build +[ 26%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/DependInfo.cmake "--color=" -[ 41%] Built target pacbio-loadxml -make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build +[ 26%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c +[ 26%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/util\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c 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-D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -MF CMakeFiles/general-loader.dir/general-loader.cpp.o.d -o CMakeFiles/general-loader.dir/general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/general-loader.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -MF CMakeFiles/makeinputs.dir/makeinputs.cpp.o.d -o CMakeFiles/makeinputs.dir/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/makeinputs.cpp -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/illumina-load.dir/link.d "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f illumina-load.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-load.dir/link.d "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv illumina-load illumina-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3.2.1 illumina-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-load fastq-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3.2.1 fastq-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target illumina-load -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -MF CMakeFiles/pacbio-load.dir/pl-sequence.c.o.d -o CMakeFiles/pacbio-load.dir/pl-sequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-sequence.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/DependInfo.cmake "--color=" -[ 41%] Built target fastq-load -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o.d -o CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c -[ 41%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here - 225 | char tmp[2]; - | ^~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-consensus.c -[ 41%] Linking CXX executable ../../../bin/sra-sort -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 -[ 41%] Linking CXX executable ../../../bin/kdbmeta -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdbmeta.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings22_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: 'tmp' declared here - 287 | char tmp[2]; - | ^~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort.dir/link.d "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort sra-sort.3.2.1 -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-passes.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3.2.1 sra-sort.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort +[ 26%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c: In function 'DB_Fini': +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { + | ^~~~~~~~ +[ 26%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c +[ 26%] Linking C static library ../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 +[ 26%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +/usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" +/usr/bin/ranlib ../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target sra-sort -[ 41%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/protocol-parser.cpp +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -MF CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c +[ 26%] Built target ksrch make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kdbmeta.dir/link.d CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdbmeta.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdbmeta kdbmeta.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3.2.1 kdbmeta.3 -[ 41%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o +[ 26%] Linking CXX executable ../../../bin/samview +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 +[ 26%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -MF CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o.d -o CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/checklookup.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings25_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here - 358 | char tmp[2]; - | ^~~ -[ 41%] Linking CXX executable ../../../bin/sra-sort-cg -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 -[ 41%] Built target kdbmeta make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build +[ 26%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-metrics.c -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-reads.c -[ 41%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o +[ 26%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-lock\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock/vdb-lock.c -In file included from /usr/include/c++/14/ios:42, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/general-writer/general-writer.hpp:34, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: -In static member function 'static constexpr std::size_t std::char_traits::length(const char_type*)', - inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with = std::allocator; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, - inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: -/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] - 391 | return __builtin_strlen(__s); - | ~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here - 57 | const char* db_schema; - | ^~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 101 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here - 54 | GeneralWriter *gw; - | ^~ -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-tag-lfr.c -[ 41%] Linking CXX executable ../../../bin/vdb-lock -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 76 | delete gw; - | ^~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here - 45 | GeneralWriter *gw; - | ^~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort-cg.dir/link.d "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort-cg.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3.2.1 sra-sort-cg.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview.dir/link.d CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f samview.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv samview samview.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3.2.1 samview.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3 samview make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target sra-sort-cg +[ 26%] Built target samview make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o +[ 26%] Linking CXX executable ../../../bin/vdb-lock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 +[ 26%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-unlock\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c +[ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c +[ 26%] Linking CXX static library ../../ilib/libgeneral-writer.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake +[ 27%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-context.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 +[ 27%] Linking CXX executable ../../../bin/vdb-unlock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-lock.dir/link.d "CMakeFiles/vdb-lock.dir/vdb-lock.c.o" -o ../../../bin/vdb-lock /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-lock.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-lock vdb-lock.3.2.1 -[ 41%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-lock.3.2.1 vdb-lock.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock -[ 41%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs -[ 41%] Linking CXX executable ../../../bin/vdb-unlock -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" +/usr/bin/ranlib ../../ilib/libgeneral-writer.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 27%] Built target vdb-lock make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/depend +[ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch/CMakeFiles/prefetch.dir/DependInfo.cmake "--color=" -[ 41%] Built target vdb-lock +[ 27%] Built target general-writer make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/depend +[ 27%] Linking CXX executable ../../../bin/kdbmeta make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdbmeta.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/build -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_3.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build +[ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o +[ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o +[ 27%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -MF CMakeFiles/prefetch.dir/kfile-no-q.c.o.d -o CMakeFiles/prefetch.dir/kfile-no-q.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/kfile-no-q.c -[ 41%] Building CXX object tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o +[ 27%] Building CXX object tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-makeinputs.dir/link.d "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bio-end-makeinputs.dir/link.d "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a +[ 27%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c +[ 27%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -MF CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-tools.c +[ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-unlock.dir/link.d "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-unlock.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-unlock vdb-unlock.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3.2.1 vdb-unlock.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3 vdb-unlock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target idx-text-makeinputs -[ 41%] Built target bio-end-makeinputs +[ 27%] Built target vdb-unlock make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-unlock.dir/link.d "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-unlock.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-unlock vdb-unlock.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_5.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3.2.1 vdb-unlock.3 -[ 41%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -[ 41%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -[ 41%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o +[ 27%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -MF CMakeFiles/prefetch.dir/PrfMain.c.o.d -o CMakeFiles/prefetch.dir/PrfMain.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfMain.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3 vdb-unlock +[ 27%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o -MF CMakeFiles/tui.dir/dir_dlg.c.o.d -o CMakeFiles/tui.dir/dir_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/dir_dlg.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kdbmeta.dir/link.d CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdbmeta.3.2.1 +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o -MF CMakeFiles/sra-sort.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdbmeta kdbmeta.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3.2.1 kdbmeta.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target vdb-unlock -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c +[ 28%] Built target kdbmeta +make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" -[ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-regions.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build +make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -[ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_7.c -[ 41%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -[ 41%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp +[ 28%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 28%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c +[ 28%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF CMakeFiles/tui.dir/eventring.c.o.d -o CMakeFiles/tui.dir/eventring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/eventring.c -[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_0.c -[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -[ 42%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c +[ 28%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-zmw.c +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c +[ 28%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -MF CMakeFiles/tui.dir/file_dlg.c.o.d -o CMakeFiles/tui.dir/file_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/file_dlg.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_2.c -[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_4.c -[ 42%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-progress.c -[ 42%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o +[ 28%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c +[ 28%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +[ 28%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o +[ 28%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/line_policy.c -[ 42%] Linking CXX static library ../../../../ilib/libtui_cpp.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/prefetch.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c +[ 28%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o +[ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -MF CMakeFiles/pacbio-load.dir/pl-sequence.c.o.d -o CMakeFiles/pacbio-load.dir/pl-sequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-sequence.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c +[ 28%] Linking C static library ../../../ilib/libfastqloader.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake +[ 28%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/screen.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 +[ 28%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +[ 28%] Linking CXX static library ../../../../ilib/libtui_cpp.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake -[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_5.c +/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o +/usr/bin/ranlib ../../../ilib/libfastqloader.a +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3DefaultRowEst': +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 +[ 28%] Built target fastqloader +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/ar qc ../../../../ilib/libtui_cpp.a CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o /usr/bin/ranlib ../../../../ilib/libtui_cpp.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 42%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -[ 42%] Built target tui_cpp +[ 28%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:11540: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~~~~~ +[ 28%] Built target tui_cpp make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" +[ 29%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/string_cache.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 29%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file.c -[ 42%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~ +[ 29%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c +[ 29%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF CMakeFiles/illumina-dump.dir/factory.c.o.d -o CMakeFiles/illumina-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -[ 42%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp -[ 43%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c -[ 44%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -[ 44%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/screen.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function 'pacbio_meta_entry': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); - | ^~~~~~~~ -[ 44%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -[ 44%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/prefetch.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); - | ^~~~~~~~ +[ 29%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c +[ 29%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-consensus.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] - 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); - | ^ -[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/string_cache.c -[ 45%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file-version-factory.c -[ 45%] Linking CXX executable ../../../bin/pacbio-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, spdlog::stopwatch, long unsigned int}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'void spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum, spdlog::string_view_t, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; spdlog::string_view_t = fmt::v9::basic_string_view]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:90:13: required from 'void spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum, fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 90 | log_(loc, lvl, details::to_string_view(fmt), std::forward(args)...); - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:96:12: required from 'void spdlog::logger::log(spdlog::level::level_enum, fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 96 | log(source_loc{}, lvl, fmt, std::forward(args)...); - | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:158:12: required from 'void spdlog::logger::info(fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 158 | log(level::info, fmt, std::forward(args)...); - | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/spdlog.h:170:31: required from 'void spdlog::info(fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, stopwatch&, long unsigned int>]' - 170 | default_logger_raw()->info(fmt, std::forward(args)...); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/spot_assembly.hpp:406:21: required from here - 406 | spdlog::info("{} Batch insert: {:.3}, {:L} reads", batch_idx, sw, new_batch.m_spot_map->size()); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:374:75: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1, ((long unsigned int&)args#2))' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 45%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o +[ 29%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c +[ 29%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui.c +[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c +[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c +[ 30%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-passes.c +[ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here + 225 | char tmp[2]; + | ^~~ +[ 30%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg.c +[ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -MF CMakeFiles/sra-sort.dir/run.c.o.d -o CMakeFiles/sra-sort.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c +[ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o +[ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings22_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: 'tmp' declared here + 287 | char tmp[2]; + | ^~~ +[ 32%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o +[ 31%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +[ 32%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-metrics.c +[ 32%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings25_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here + 358 | char tmp[2]; + | ^~~ +[ 32%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c +[ 32%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o +cd 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CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c +[ 33%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 +[ 33%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -[ 45%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/formats.c +[ 33%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-reads.c +[ 33%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c +[ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ -[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui.c -[ 45%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-algn.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-load.dir/link.d "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-load pacbio-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3.2.1 pacbio-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load -[ 45%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 45%] Built target pacbio-load -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 45%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF CMakeFiles/abi-dump.dir/factory.c.o.d -o CMakeFiles/abi-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg.c -[ 46%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fastq.c -[ 46%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ -[ 46%] Linking CXX executable ../../../../test-bin/makeinputs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 -[ 46%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-dnbs.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/makeinputs.dir/link.d CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb +[ 34%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fastq.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-checklookup.dir/link.d "CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o" -o ../../../../../test-bin/idx-text-checklookup /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 46%] Built target makeinputs +make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend +[ 34%] Built target idx-text-checklookup +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/DependInfo.cmake "--color=" -[ 47%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF CMakeFiles/abi-dump.dir/factory.c.o.d -o CMakeFiles/abi-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 34%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -MF CMakeFiles/sra-pileup.dir/dyn_string.c.o.d -o CMakeFiles/sra-pileup.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c -[ 47%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/sff.c -[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o +[ 34%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cmdline_cmn.c -[ 47%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-seq.c -[ 47%] Linking CXX executable ../../../bin/sff-dump -[ 48%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o +[ 34%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-regions.c +[ 34%] Linking CXX executable ../../../bin/sra-sort +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 +[ 34%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c +[ 34%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_3.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort.dir/link.d "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort sra-sort.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3.2.1 sra-sort.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 34%] Built target sra-sort +make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make 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-Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/inputfiles.c +[ 35%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-dump.dir/link.txt --verbose=1 -[ 48%] Linking CXX executable ../../../bin/cg-load -[ 48%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -[ 49%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 -[ 49%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o +[ 36%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_5.c +[ 36%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +[ 36%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_7.c +[ 36%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c +[ 36%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c +[ 37%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_0.c +[ 37%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c +[ 37%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfRetrier.c +[ 37%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-progress.c +[ 37%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/sff.c +[ 37%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c +[ 37%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c +[ 37%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_2.c +[ 37%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/reref.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cg-load.dir/link.d "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f cg-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cg-load cg-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3.2.1 cg-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3 cg-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-checklookup.dir/link.d "CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o" -o ../../../../../test-bin/idx-text-checklookup /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target cg-load +[ 37%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_menu.c +[ 37%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF CMakeFiles/illumina-dump.dir/illumina.c.o.d -o CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/illumina.c +[ 37%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c +[ 38%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -MF CMakeFiles/prefetch.dir/PrfOutFile.c.o.d -o CMakeFiles/prefetch.dir/PrfOutFile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfOutFile.c +[ 38%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_4.c +[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c +[ 38%] Linking CXX executable ../../../bin/sff-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-dump.dir/link.txt --verbose=1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function 'pacbio_meta_entry': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); + | ^~~~~~~~ +[ 38%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_5.c +[ 38%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-dump.dir/link.d "CMakeFiles/sff-dump.dir/factory.c.o" "CMakeFiles/sff-dump.dir/fasta_dump.c.o" "CMakeFiles/sff-dump.dir/core.c.o" "CMakeFiles/sff-dump.dir/sff.c.o" -o ../../../bin/sff-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sff-dump.3.2.1 -make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup 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'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-dump.3.2.1 sff-dump.3 -[ 49%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_palette.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o +[ 38%] Linking CXX executable ../../../bin/illumina-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-dump.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF CMakeFiles/fasterq-dump.dir/helper.c.o.d -o CMakeFiles/fasterq-dump.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/helper.c +[ 38%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o CMakeFiles/tui.dir/tui_std_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_std_dlg.c +[ 39%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 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ln -f -s illumina-dump.3 illumina-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 39%] Built target illumina-dump make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o +[ 39%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_menu.c -[ 50%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c -[ 50%] Linking CXX executable ../../../bin/fastq-dump +[ 39%] Linking CXX executable ../../../bin/fastq-dump cd 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/rna_splice_log.c -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/arg_helper.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-dump.dir/link.d "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv illumina-dump illumina-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-dump fastq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-dump.3.2.1 illumina-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-dump.3.2.1 fastq-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump -[ 50%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 40%] Linking CXX executable ../../../bin/prefetch +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-load.dir/link.d "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-load pacbio-load.3.2.1 +[ 40%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3.2.1 pacbio-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 fastq-dump-driver -[ 50%] Built target illumina-dump +[ 40%] Built target pacbio-load make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o +[ 40%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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-mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/formats.c +[ 40%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o +[ 40%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-algn.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/prefetch.dir/link.d "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f prefetch.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv prefetch prefetch.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s prefetch.3.2.1 prefetch.3 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-dump.dir/link.d "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s prefetch.3 prefetch +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 prefetch-driver +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-dump fastq-dump.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-dump.3.2.1 fastq-dump.3 +[ 40%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -MF CMakeFiles/sra-pileup.dir/report_deletes.c.o.d -o CMakeFiles/sra-pileup.dir/report_deletes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/report_deletes.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-dump.3 fastq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 fastq-dump-driver +[ 40%] Built target prefetch make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfRetrier.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/DependInfo.cmake "--color=" -[ 51%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o +[ 41%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o +[ 41%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_palette.c -[ 52%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 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-D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF CMakeFiles/abi-dump.dir/abi.c.o.d -o CMakeFiles/abi-dump.dir/abi.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/abi.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF CMakeFiles/sam-dump.dir/out_redir.c.o.d -o CMakeFiles/sam-dump.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c +[ 41%] Built target fastq-dump +make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt 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-I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-corrupt.cpp -[ 52%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c -[ 52%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o CMakeFiles/tui.dir/tui_std_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_std_dlg.c -[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 41%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-decrypt.c +[ 41%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX 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Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o +[ 41%] Linking CXX executable ../../../bin/abi-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-dump.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-hdr.c +[ 41%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c -[ 52%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -MF CMakeFiles/prefetch.dir/PrfOutFile.c.o.d -o CMakeFiles/prefetch.dir/PrfOutFile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfOutFile.c -[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -MF CMakeFiles/sra-pileup.dir/report_deletes.c.o.d -o CMakeFiles/sra-pileup.dir/report_deletes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/report_deletes.c +[ 41%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o CMakeFiles/vdb-decrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c +[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c: In function 'tctx_extract_short_accession': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c:362:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 362 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ -[ 52%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/vdb-validate.c -[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_regions.c -[ 52%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget.c -[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF 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-mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c -[ 52%] Linking CXX executable ../../../bin/abi-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-dump.dir/link.txt --verbose=1 -[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-hdr.c -[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_button.c -[ 53%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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/usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/abi-dump.dir/link.d "CMakeFiles/abi-dump.dir/factory.c.o" "CMakeFiles/abi-dump.dir/fasta_dump.c.o" "CMakeFiles/abi-dump.dir/core.c.o" "CMakeFiles/abi-dump.dir/abi.c.o" -o ../../../bin/abi-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f abi-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv abi-dump abi-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-dump.3.2.1 abi-dump.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-dump.3 abi-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker.c -[ 53%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_checkbox.c -[ 54%] Linking CXX executable ../../../bin/prefetch -[ 54%] Built target abi-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 55%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -[ 55%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-decrypt.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o CMakeFiles/tui.dir/tui_widget_grid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_grid.c -[ 55%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr1.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr1.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-hdr1.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c: In function 'insp_report': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:1155:14: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] - 1155 | rc = KOutMsg( "... is %s\n", s_acc_type ); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: 'res' was declared here - 248 | const char * res; - | ^~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/prefetch.dir/link.d "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f prefetch.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv prefetch prefetch.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s prefetch.3.2.1 prefetch.3 -[ 55%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sbuffer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s prefetch.3 prefetch -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 prefetch-driver -[ 55%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_inputline.c -[ 55%] Built target prefetch +[ 41%] Built target abi-dump +[ 41%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_button.c make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/DependInfo.cmake "--color=" +[ 42%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT 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-D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -MF CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o.d -o CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-encrypt.c -[ 55%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/err_msg.c -[ 56%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_label.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o CMakeFiles/sra-pileup.dir/walk_debug.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/walk_debug.c -[ 56%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_tools.c -[ 56%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o +[ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-dnbs.c +[ 42%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -MF CMakeFiles/sra-pileup.dir/4na_ascii.c.o.d -o CMakeFiles/sra-pileup.dir/4na_ascii.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/4na_ascii.c +[ 42%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -MF CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o CMakeFiles/vdb-encrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c -[ 56%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb 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tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o CMakeFiles/tui.dir/tui_widget_progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_progress.c -[ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_counters.c -[ 57%] Linking CXX executable ../../../bin/vdb-decrypt +[ 43%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c +[ 44%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o CMakeFiles/tui.dir/tui_widget_grid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_grid.c +[ 44%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker_0.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker_0.c +[ 44%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o +[ 44%] Linking CXX executable ../../../bin/vdb-decrypt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-decrypt.dir/link.txt --verbose=1 -[ 57%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -MF CMakeFiles/fasterq-dump.dir/var_fmt.c.o.d -o CMakeFiles/fasterq-dump.dir/var_fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/var_fmt.c -[ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c -[ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -MF CMakeFiles/sam-dump.dir/read_fkt.c.o.d -o CMakeFiles/sam-dump.dir/read_fkt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/read_fkt.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c +[ 44%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +[ 44%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-decrypt.dir/link.d "CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o" "CMakeFiles/vdb-decrypt.dir/shared.c.o" -o ../../../bin/vdb-decrypt /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-decrypt.3.2.1 -[ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-decrypt vdb-decrypt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_index.c +[ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-seq.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-decrypt.3.2.1 vdb-decrypt.3 -[ 57%] Linking CXX executable ../../../bin/vdb-encrypt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-decrypt.3 vdb-decrypt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 -[ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 57%] Linking CXX executable ../../../bin/check-corrupt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-corrupt.dir/link.txt --verbose=1 -[ 57%] Built target vdb-decrypt +[ 44%] Built target vdb-decrypt make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" -[ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -MF CMakeFiles/sra-pileup.dir/pileup_indels.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_indels.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_indels.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 57%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -[ 57%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o +[ 44%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/flex_printer.c -[ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-encrypt.3.2.1 -[ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv check-corrupt check-corrupt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_varcount.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-encrypt vdb-encrypt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-corrupt.3.2.1 check-corrupt.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-encrypt.3.2.1 vdb-encrypt.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-encrypt.3 vdb-encrypt -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 44%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_inputline.c +[ 44%] Linking CXX executable ../../../bin/cg-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 +[ 44%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -MF CMakeFiles/sam-dump.dir/matecache.c.o.d -o CMakeFiles/sam-dump.dir/matecache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/matecache.c +[ 44%] Linking CXX executable ../../../bin/vdb-encrypt +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 +[ 45%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-tools.c +[ 45%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c +[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_label.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cg-load.dir/link.d "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f cg-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cg-load cg-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3.2.1 cg-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3 cg-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 57%] Built target check-corrupt +[ 45%] Built target cg-load make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend -[ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" -[ 57%] Built target vdb-encrypt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-aligned.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c -[ 58%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc 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make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 58%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -[ 58%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-redact.c +[ 45%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/assembly-statistics.c -[ 58%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o -cd 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CMakeFiles/tui.dir/linux/systui.c.o.d -o CMakeFiles/tui.dir/linux/systui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/linux/systui.c -[ 58%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_dir.c -[ 59%] Linking CXX executable ../../../bin/vdb-validate -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-validate.dir/link.txt --verbose=1 -[ 59%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -MF CMakeFiles/srapath.dir/line_iter.c.o.d -o CMakeFiles/srapath.dir/line_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/line_iter.c -[ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -MF CMakeFiles/sra-pileup.dir/pileup_v2.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_v2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_v2.c -[ 59%] Linking CXX executable ../../../bin/general-loader -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 -[ 59%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong 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-I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/progress_thread.c -[ 59%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF CMakeFiles/srapath.dir/repository-mgr.c.o.d -o CMakeFiles/srapath.dir/repository-mgr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/repository-mgr.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-validate.dir/link.d "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-validate.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-validate vdb-validate.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3.2.1 vdb-validate.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3 vdb-validate +[ 45%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -MF CMakeFiles/sam-dump.dir/read_fkt.c.o.d -o CMakeFiles/sam-dump.dir/read_fkt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/read_fkt.c +[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o CMakeFiles/tui.dir/tui_widget_progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_progress.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:1155:14: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] + 1155 | rc = KOutMsg( "... is %s\n", s_acc_type ); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: 'res' was declared here + 248 | const char * res; + | ^~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 59%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -MF CMakeFiles/srapath.dir/services.c.o.d -o CMakeFiles/srapath.dir/services.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/services.c -[ 59%] Built target vdb-validate +[ 45%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o +[ 45%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -MF CMakeFiles/sra-stat.dir/sra-stat.c.o.d -o CMakeFiles/sra-stat.dir/sra-stat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c -[ 61%] Linking C static library ../../../../ilib/libtui.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk 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tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/rcexplain && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/util\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -MF 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CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o -/usr/bin/ranlib ../../../../ilib/libtui.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 45%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sbuffer.c +[ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c +[ 45%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DBMNEONOPT 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-mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_counters.c +[ 46%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF CMakeFiles/srapath.dir/repository-mgr.c.o.d -o CMakeFiles/srapath.dir/repository-mgr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/repository-mgr.c +[ 46%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 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tools/external/srapath/CMakeFiles/srapath.dir/services.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -MF CMakeFiles/srapath.dir/services.c.o.d -o CMakeFiles/srapath.dir/services.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/services.c +[ 46%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f rcexplain.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv rcexplain rcexplain.3.2.1 +[ 46%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o +[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-aligned.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rcexplain.3.2.1 rcexplain.3 +[ 47%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rcexplain.3 rcexplain make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Built target general-loader +[ 47%] Linking CXX executable ../../../bin/check-corrupt +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-corrupt.dir/link.txt --verbose=1 +[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o +[ 47%] Built target rcexplain +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc 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make -f tools/external/align-info/CMakeFiles/align-info.dir/build.make tools/external/align-info/CMakeFiles/align-info.dir/depend +[ 47%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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tools/external/test-sra/CMakeFiles/test-sra.dir/build.make tools/external/test-sra/CMakeFiles/test-sra.dir/depend +[ 47%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra/CMakeFiles/test-sra.dir/DependInfo.cmake "--color=" make -f tools/external/align-info/CMakeFiles/align-info.dir/build.make tools/external/align-info/CMakeFiles/align-info.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_tools.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c: In function 'KMain': -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/external/test-sra/CMakeFiles/test-sra.dir/build.make tools/external/test-sra/CMakeFiles/test-sra.dir/build -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1416 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Building C object tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o +[ 47%] Building C object tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/align-info && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/align-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/index.c -[ 61%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/test-sra\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c +[ 47%] Linking CXX executable ../../../bin/sra-sort-cg +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c: In function 'print_results': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c:3263:22: warning: unused variable 'rc_fmt' [-Wunused-variable] 3263 | rc_t rc_fmt = formatLoadTime(ctx->info->loadTimestamp, buf, sizeof(buf), &sz); | ^~~~~~ -[ 61%] Linking CXX executable ../../../bin/rcexplain -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/rcexplain && /usr/bin/cmake -E cmake_link_script CMakeFiles/rcexplain.dir/link.txt --verbose=1 -[ 61%] Building C object 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-Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort-cg.dir/link.d "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort-cg.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/test-sra\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o -MF CMakeFiles/test-sra.dir/test-sra.c.o.d -o CMakeFiles/test-sra.dir/test-sra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/test-sra.c +[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_varcount.c +[ 47%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-redact.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3.2.1 sra-sort-cg.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 47%] Built target sra-sort-cg make -f tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/build.make tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/DependInfo.cmake "--color=" -[ 61%] Linking CXX executable ../../../bin/align-info -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script 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61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-redir.c -[ 61%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-unaligned.c -[ 61%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF CMakeFiles/srapath.dir/srapath.c.o.d -o CMakeFiles/srapath.dir/srapath.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/srapath.c +[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -MF CMakeFiles/sra-pileup.dir/pileup_stat.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_stat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_stat.c +[ 47%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o -MF CMakeFiles/srapath.dir/cgi_request.c.o.d -o CMakeFiles/srapath.dir/cgi_request.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/cgi_request.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c: In function 'perform_report': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:702:16: warning: storing the address of local variable 'data' in '*octx.data' [-Wdangling-pointer=] 702 | octx->data = &data; @@ -4713,212 +4193,230 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:984:40: note: 'octx' declared here 984 | static rc_t perform_clear( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-info.dir/link.d "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-info align-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-info.3.2.1 align-info.3 -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 +[ 48%] Linking CXX executable ../../../bin/vdb-validate +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-validate.dir/link.txt --verbose=1 +[ 49%] Linking C static library ../../../../ilib/libtui.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake +[ 49%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 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CMakeFiles/tui.dir/link.txt --verbose=1 +[ 49%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/flex_printer.c +/usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o +/usr/bin/ranlib ../../../../ilib/libtui.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c -[ 61%] Built target align-info +[ 49%] Built target tui make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool/CMakeFiles/sratools.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-info.dir/link.d "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-info.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-info align-info.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Linking CXX executable ../../../bin/sra-pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-pileup.dir/link.txt --verbose=1 -[ 61%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-info.3.2.1 align-info.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-info.3 align-info +[ 49%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -MF CMakeFiles/sratools.dir/sratools.cpp.o.d -o CMakeFiles/sratools.dir/sratools.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.cpp -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 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-DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-pileup.dir/link.d "CMakeFiles/sra-pileup.dir/dyn_string.c.o" "CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o" "CMakeFiles/sra-pileup.dir/out_redir.c.o" "CMakeFiles/sra-pileup.dir/perf_log.c.o" "CMakeFiles/sra-pileup.dir/reref.c.o" "CMakeFiles/sra-pileup.dir/cg_tools.c.o" "CMakeFiles/sra-pileup.dir/report_deletes.c.o" "CMakeFiles/sra-pileup.dir/ref_regions.c.o" "CMakeFiles/sra-pileup.dir/4na_ascii.c.o" "CMakeFiles/sra-pileup.dir/ref_walker_0.c.o" "CMakeFiles/sra-pileup.dir/ref_walker.c.o" "CMakeFiles/sra-pileup.dir/walk_debug.c.o" "CMakeFiles/sra-pileup.dir/pileup_counters.c.o" "CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-pileup.3.2.1 -[ 61%] Linking CXX executable ../../../bin/srapath -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-pileup sra-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3.2.1 sra-pileup.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/file_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_printer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sra-pileup-driver +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-validate.dir/link.d "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-validate.3.2.1 +[ 49%] Built target align-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-validate vdb-validate.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3.2.1 vdb-validate.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3 vdb-validate +[ 49%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Built target sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_dir.c +[ 49%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c +[ 49%] Built target vdb-validate make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info 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-D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-inspect.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srapath.dir/link.d CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srapath.3.2.1 -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -[ 61%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/merge_sorter.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srapath srapath.3.2.1 +[ 49%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF CMakeFiles/srapath.dir/srapath.c.o.d -o CMakeFiles/srapath.dir/srapath.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/srapath.c +[ 49%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/main.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3.2.1 srapath.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3 srapath -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 srapath-driver -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Built target srapath +[ 49%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1416 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/progress_thread.c +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cleanup_task.c +[ 50%] Linking CXX executable ../../../bin/cache-mgr +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr && /usr/bin/cmake -E cmake_link_script CMakeFiles/cache-mgr.dir/link.txt --verbose=1 +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_writer.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cache-mgr.dir/link.d "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f cache-mgr.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cache-mgr cache-mgr.3.2.1 +[ 50%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3.2.1 cache-mgr.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-unaligned.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 50%] Built target cache-mgr +make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache/CMakeFiles/align-cache.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cache-mgr cache-mgr.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3.2.1 cache-mgr.3 +[ 50%] Linking CXX executable ../../../bin/srapath make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 +[ 50%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/align-cache\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -MF CMakeFiles/align-cache.dir/align-cache.cpp.o.d -o CMakeFiles/align-cache.dir/align-cache.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/align-cache.cpp -[ 61%] Built target cache-mgr -[ 61%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/md_flag.c +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_reader.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_reader.c +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -MF CMakeFiles/fasterq-dump.dir/locked_file_list.c.o.d -o CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/locked_file_list.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srapath.dir/link.d CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srapath.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srapath srapath.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3.2.1 srapath.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3 srapath +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 srapath-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -MF CMakeFiles/fasterq-dump.dir/locked_value.c.o.d -o CMakeFiles/fasterq-dump.dir/locked_value.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/locked_value.c +[ 50%] Built target srapath make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract/CMakeFiles/ccextract.dir/DependInfo.cmake "--color=" +[ 50%] Linking CXX executable ../../../bin/sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-pileup.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb_info.c -[ 61%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o +[ 50%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ccextract\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract/ccextract.c -[ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sorter.c -[ 61%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -[ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/merge_sorter.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-pileup.dir/link.d "CMakeFiles/sra-pileup.dir/dyn_string.c.o" "CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o" "CMakeFiles/sra-pileup.dir/out_redir.c.o" "CMakeFiles/sra-pileup.dir/perf_log.c.o" "CMakeFiles/sra-pileup.dir/reref.c.o" "CMakeFiles/sra-pileup.dir/cg_tools.c.o" "CMakeFiles/sra-pileup.dir/report_deletes.c.o" "CMakeFiles/sra-pileup.dir/ref_regions.c.o" "CMakeFiles/sra-pileup.dir/4na_ascii.c.o" "CMakeFiles/sra-pileup.dir/ref_walker_0.c.o" "CMakeFiles/sra-pileup.dir/ref_walker.c.o" "CMakeFiles/sra-pileup.dir/walk_debug.c.o" "CMakeFiles/sra-pileup.dir/pileup_counters.c.o" "CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-pileup sra-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3.2.1 sra-pileup.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sra-pileup-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.cpp:59: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump.c +[ 50%] Built target sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 62%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cmn_iter.c -[ 63%] Linking CXX executable ../../../bin/ccextract -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ccextract.dir/link.d CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libxml2.so -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ccextract.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ccextract ccextract.3.2.1 -[ 63%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3.2.1 ccextract.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/test-sra\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -MF CMakeFiles/test-sra.dir/unix/PrintOS.c.o.d -o CMakeFiles/test-sra.dir/unix/PrintOS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/unix/PrintOS.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3 ccextract -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 63%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -[ 63%] Built target ccextract -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/raw_read_iter.c make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/depend +[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sorter.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact/CMakeFiles/check-redact.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 63%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c -[ 63%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -[ 63%] Linking CXX executable ../../../bin/test-sra +[ 50%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/check-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact/check-redact.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 -[ 63%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/align-cache\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/helper.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4387 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -[ 63%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/special_iter.c -[ 63%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/sra-info.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-sra.dir/link.d "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-sra.3.2.1 -[ 63%] Linking CXX executable ../../../bin/check-redact -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-sra test-sra.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3.2.1 test-sra.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3 test-sra -[ 63%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_ua_iter.c +[ 51%] Linking CXX executable ../../../bin/ccextract +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cmn_iter.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ccextract.dir/link.d CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libxml2.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ccextract.3.2.1 +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/raw_read_iter.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ccextract ccextract.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3.2.1 ccextract.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3 ccextract make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target test-sra +[ 52%] Built target ccextract make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/DependInfo.cmake "--color=" +[ 52%] Linking CXX executable ../../../bin/check-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 63%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o +[ 52%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c +[ 52%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/align-cache\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/helper.cpp +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc 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check-redact.3.2.1 check-redact.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-redact.3 check-redact +[ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target check-redact +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/md_flag.c +[ 52%] Built target check-redact make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_ua_iter.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" -[ 64%] Linking CXX executable ../../../bin/vdb-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/build +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 64%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/align_iter.c -[ 64%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c +[ 52%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -MF CMakeFiles/copycat.dir/copycat.c.o.d -o CMakeFiles/copycat.dir/copycat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/copycat.c -[ 64%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/formatter.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump.dir/link.d "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-dump vdb-dump.3.2.1 -[ 64%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o +[ 52%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c +[ 52%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 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tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/simple_fasta_iter.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3.2.1 vdb-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 vdb-dump-driver +[ 52%] Linking CXX executable ../../../bin/test-sra +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/db_join.c +[ 52%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tbl_join.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-sra.dir/link.d "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-sra.3.2.1 +[ 52%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/sra-info.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-sra test-sra.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3.2.1 test-sra.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3 test-sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target vdb-dump +[ 52%] Built target test-sra make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/DependInfo.cmake "--color=" +[ 52%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -MF 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-I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/db_join.c -[ 65%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o +[ 53%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-unused-result -MD -MT tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -MF CMakeFiles/make-read-filter.dir/make-read-filter.c.o.d -o CMakeFiles/make-read-filter.dir/make-read-filter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter/make-read-filter.c -[ 65%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o +[ 53%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o -MF CMakeFiles/copycat.dir/ccfileformat.c.o.d -o CMakeFiles/copycat.dir/ccfileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c -[ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -[ 66%] Linking CXX executable ../../../bin/align-cache -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/config.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c: In function 'CCFileFormatIsFastq': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:277:27: warning: 'seq_len' may be used uninitialized [-Wmaybe-uninitialized] 277 | if(quality_values_len != seq_len) @@ -4926,115 +4424,152 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:195:12: note: 'seq_len' was declared here 195 | size_t seq_len,quality_values_len,seq_id_len; | ^~~~~~~ -[ 66%] Linking CXX executable ../../../bin/compute-coverage -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-cache.dir/link.d "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-cache.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-cache align-cache.3.2.1 -[ 66%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o +[ 53%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_registry.c +[ 53%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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-O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cccat.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3.2.1 align-cache.3 +[ 53%] Linking CXX executable ../../../bin/compute-coverage +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage.dir/link.txt --verbose=1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4387 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 54%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/copy_machine.c +[ 54%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-formats.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage.dir/link.d "CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o" -o ../../../bin/compute-coverage ../../../ilib/libtk-version.a -lkapp /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f compute-coverage.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv compute-coverage compute-coverage.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage.3.2.1 compute-coverage.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3 align-cache cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage.3 compute-coverage make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 66%] Built target align-cache +[ 54%] Built target compute-coverage make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/depend -[ 66%] Built target compute-coverage make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp/CMakeFiles/md5cp.dir/DependInfo.cmake "--color=" -make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 66%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o +[ 54%] Linking CXX executable ../../../bin/align-cache +[ 54%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF CMakeFiles/md5cp.dir/md5cp.c.o.d -o CMakeFiles/md5cp.dir/md5cp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp/md5cp.c -[ 66%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -[ 67%] Linking CXX executable ../../../bin/sra-stat -cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-stat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-stat sra-stat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3.2.1 sra-stat.3 -[ 67%] Linking CXX executable ../../../bin/meta-cmp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat -[ 67%] Linking CXX executable ../../../bin/make-read-filter +[ 54%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o +[ 54%] Linking CXX executable ../../../bin/make-read-filter +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 +[ 54%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-redir.c +[ 54%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/concatenator.c +[ 55%] Linking CXX executable ../../../bin/sra-stat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-cache.dir/link.d "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-cache.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-cache align-cache.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3.2.1 align-cache.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3 align-cache +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/make-read-filter.dir/link.d "CMakeFiles/make-read-filter.dir/make-read-filter.c.o" -o ../../../bin/make-read-filter /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f make-read-filter.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 67%] Built target sra-stat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv make-read-filter make-read-filter.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3.2.1 make-read-filter.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter +[ 55%] Built target align-cache +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend +[ 55%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/DependInfo.cmake "--color=" +[ 55%] Built target make-read-filter make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy/CMakeFiles/meta-copy.dir/DependInfo.cmake "--color=" -[ 67%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -MF CMakeFiles/copycat.dir/cctree.c.o.d -o CMakeFiles/copycat.dir/cctree.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 55%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/ref_inventory.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build +[ 55%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/meta-cmp\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -MF CMakeFiles/meta-cmp.dir/meta-cmp.c.o.d -o CMakeFiles/meta-cmp.dir/meta-cmp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp/meta-cmp.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 67%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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/usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f make-read-filter.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv make-read-filter make-read-filter.3.2.1 -[ 67%] Linking CXX executable ../../../bin/md5cp +[ 55%] Linking CXX executable ../../../bin/md5cp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp && /usr/bin/cmake -E cmake_link_script CMakeFiles/md5cp.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3.2.1 make-read-filter.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-stat.dir/link.d "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-stat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-stat sra-stat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3.2.1 sra-stat.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 67%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-cmp.dir/link.d "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-cmp.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c -[ 67%] Built target make-read-filter -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-cmp meta-cmp.3.2.1 +[ 55%] Built target sra-stat make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair/CMakeFiles/meta-repair.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3.2.1 meta-cmp.3 -[ 67%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c: In function 'KMain': -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 557 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tbl_join.c +[ 55%] Linking CXX executable ../../../bin/meta-cmp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Linking CXX executable ../../../bin/meta-copy make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 -[ 68%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o +[ 55%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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../../../bin/meta-copy +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/md5cp.dir/link.d CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 56%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f md5cp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -MF CMakeFiles/copycat.dir/cctree.c.o.d -o CMakeFiles/copycat.dir/cctree.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv md5cp md5cp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3.2.1 md5cp.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3 md5cp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-cmp.dir/link.d "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-cmp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-cmp meta-cmp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3.2.1 meta-cmp.3 +[ 56%] Built target md5cp make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/DependInfo.cmake "--color=" -[ 68%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o CMakeFiles/sam-dump.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 56%] Built target meta-cmp +make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" +[ 57%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -[ 68%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/config.cpp +[ 57%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o +[ 57%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -MF CMakeFiles/copycat.dir/cctree-dump.c.o.d -o CMakeFiles/copycat.dir/cctree-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/rd-filter-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -MF CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o.d -o CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/test-read-write-cursor.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/md5cp.dir/link.d CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f md5cp.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv md5cp md5cp.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3.2.1 md5cp.3 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-copy.dir/link.d "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-copy.3.2.1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-copy meta-copy.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3.2.1 meta-copy.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 57%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/rd-filter-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -MF CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o.d -o CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c +[ 57%] Built target meta-copy +make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/DependInfo.cmake "--color=" /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:39:9: warning: "__USE_POSIX" redefined 39 | #define __USE_POSIX | ^~~~~~~~~~~ @@ -5049,406 +4584,411 @@ /usr/include/features.h:348:10: note: this is the location of the previous definition 348 | # define __USE_POSIX 1 | ^~~~~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3 md5cp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-copy.dir/link.d "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-copy.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-copy meta-copy.3.2.1 -[ 68%] Built target md5cp -make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3.2.1 meta-copy.3 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" -[ 68%] Linking CXX executable ../../../bin/sam-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/rd-filter-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -MF CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o.d -o CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c -[ 68%] Built target meta-copy -make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o -MF CMakeFiles/vdb-copy.dir/context.c.o.d -o CMakeFiles/vdb-copy.dir/context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/context.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c: In function 'enter_date_name_vers': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c:755:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 755 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); | ^~~~~~~~ -[ 68%] Linking CXX executable ../../../bin/test-read-write-cursor -[ 68%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o +[ 57%] Linking CXX executable ../../../bin/fasterq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 +[ 57%] Linking CXX executable ../../../bin/test-read-write-cursor cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-read-write-cursor.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o -MF CMakeFiles/vdb-copy.dir/context.c.o.d -o CMakeFiles/vdb-copy.dir/context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/context.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-dump.dir/link.d "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sam-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sam-dump sam-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3.2.1 sam-dump.3 -[ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o +[ 57%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -MF CMakeFiles/copycat.dir/cctar.c.o.d -o CMakeFiles/copycat.dir/cctar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctar.c +[ 57%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +[ 57%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/helper.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-read-write-cursor.dir/link.d "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-read-write-cursor.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fasterq-dump.dir/link.d "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fasterq-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-read-write-cursor test-read-write-cursor.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-read-write-cursor.3.2.1 test-read-write-cursor.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sam-dump-driver cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-read-write-cursor.3 test-read-write-cursor +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 fasterq-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Linking CXX executable ../../../bin/meta-repair -[ 68%] Built target sam-dump +[ 57%] Built target test-read-write-cursor make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 -[ 68%] Built target test-read-write-cursor make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/DependInfo.cmake "--color=" +[ 57%] Built target fasterq-dump make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Linking CXX executable ../../../bin/read-filter-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 68%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o +[ 57%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o -MF CMakeFiles/vdb-diff.dir/namelist_tools.c.o.d -o CMakeFiles/vdb-diff.dir/namelist_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/namelist_tools.c -[ 68%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o +[ 57%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-inspect.c +[ 57%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -MF CMakeFiles/copycat.dir/ccsra.c.o.d -o CMakeFiles/copycat.dir/ccsra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsra.c +[ 57%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -MF CMakeFiles/crc32sum.dir/crc32sum.c.o.d -o CMakeFiles/crc32sum.dir/crc32sum.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum/crc32sum.c -[ 68%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/helper.c -[ 68%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_registry.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/read-filter-redact.dir/link.d "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f read-filter-redact.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.2.1 +[ 57%] Linking CXX executable ../../../bin/meta-repair +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 +[ 57%] Linking CXX executable ../../../bin/crc32sum +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 +[ 58%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -MF CMakeFiles/vdb-diff.dir/coldefs.c.o.d -o CMakeFiles/vdb-diff.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/coldefs.c +[ 58%] Linking CXX executable ../../../bin/read-filter-redact +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-repair.dir/link.d "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3.2.1 read-filter-redact.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-repair.3.2.1 -[ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -MF CMakeFiles/copycat.dir/ccsra.c.o.d -o CMakeFiles/copycat.dir/ccsra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsra.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-repair meta-repair.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 58%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-repair.3.2.1 meta-repair.3 -[ 68%] Built target read-filter-redact -[ 69%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/copy_machine.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsubchunk.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 59%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o +[ 59%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/coldefs.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfile.c +[ 59%] Built target meta-repair +make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download/CMakeFiles/test-download.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 69%] Linking CXX executable ../../../bin/crc32sum -[ 69%] Built target meta-repair -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/read-filter-redact.dir/link.d "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f read-filter-redact.3.2.1 +[ 59%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download/test-download.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3.2.1 read-filter-redact.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 59%] Built target read-filter-redact make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/DependInfo.cmake "--color=" -[ 69%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download/test-download.c +[ 59%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build -[ 70%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff-context.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -MF CMakeFiles/vdb-diff.dir/coldefs.c.o.d -o CMakeFiles/vdb-diff.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/coldefs.c -[ 70%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index/kdb-index.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/crc32sum.dir/link.d CMakeFiles/crc32sum.dir/crc32sum.c.o -o ../../../bin/crc32sum /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f crc32sum.3.2.1 -[ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsubchunk.c +[ 59%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o +[ 59%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv crc32sum crc32sum.3.2.1 -[ 70%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff-context.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -MF CMakeFiles/copycat.dir/kff/fileformat.c.o.d -o CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb_info.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s crc32sum.3.2.1 crc32sum.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum +[ 59%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target crc32sum +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index/kdb-index.c +[ 59%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c +[ 59%] Built target crc32sum make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 70%] Linking CXX executable ../../../bin/kdb-index -[ 70%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/multi_writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfile.c -[ 71%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o +[ 59%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -MF CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o.d -o CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct/pacbio-correct.c -[ 71%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/coldefs.c -[ 71%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/cmn.c -[ 71%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -MF CMakeFiles/copycat.dir/kff/fileformat.c.o.d -o CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c -[ 71%] Linking CXX executable ../../../bin/test-download +[ 59%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o +[ 59%] Linking CXX executable ../../../bin/test-download cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kdb-index.dir/link.d "CMakeFiles/kdb-index.dir/kdb-index.c.o" -o ../../../bin/kdb-index /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdb-index.3.2.1 -[ 71%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/concatenator.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdb-index kdb-index.3.2.1 -[ 71%] Linking CXX executable ../../../bin/pacbio-correct +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/cmn.c +[ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c +[ 59%] Linking CXX executable ../../../bin/pacbio-correct cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3.2.1 kdb-index.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 71%] Built target kdb-index -make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/depend -[ 71%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/DependInfo.cmake "--color=" +[ 59%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -MF CMakeFiles/copycat.dir/kff/ffkey.c.o.d -o CMakeFiles/copycat.dir/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 557 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 59%] Linking CXX executable ../../../bin/kdb-index +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 +[ 59%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/ref_inventory.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-download.dir/link.d "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-download.3.2.1 -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-download test-download.3.2.1 -[ 71%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace/schema-replace.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-download.3.2.1 test-download.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-download.3 test-download +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 59%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/get_platform.c +[ 59%] Built target test-download /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-correct.dir/link.d "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-correct.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.2.1 -[ 71%] Built target test-download -make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-correct.3.2.1 pacbio-correct.3 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct +[ 59%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF CMakeFiles/sra-info.dir/formatter.cpp.o.d -o CMakeFiles/sra-info.dir/formatter.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/formatter.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build +[ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time 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../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdb-index.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 71%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -[ 71%] Built target pacbio-correct +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdb-index kdb-index.3.2.1 +[ 59%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF CMakeFiles/sratools.dir/command-line.cpp.o.d -o CMakeFiles/sratools.dir/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3.2.1 kdb-index.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 59%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/get_platform.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" -[ 71%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest/sortreadtest.c +[ 59%] Built target kdb-index +make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" +[ 59%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace/schema-replace.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build +make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 71%] Linking CXX executable ../../../bin/schema-replace -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 -[ 71%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest/rowwritetest.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -MF CMakeFiles/copycat.dir/kff/ffkey.c.o.d -o CMakeFiles/copycat.dir/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c -[ 71%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX 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tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o +[ 59%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest/sortreadtest.c +[ 60%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -MF CMakeFiles/vdb-copy.dir/copy_meta.c.o.d -o CMakeFiles/vdb-copy.dir/copy_meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c -[ 73%] Linking CXX executable ../../../bin/sortreadtest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 +[ 60%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c +[ 60%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o +[ 60%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c: In function 'enter_date_name_vers': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump.c +[ 60%] Linking CXX executable ../../../bin/sam-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable ../../../bin/sortreadtest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable ../../../bin/schema-replace +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-dump.dir/link.d "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sam-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sam-dump sam-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3.2.1 sam-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sam-dump-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 61%] Built target sam-dump +make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest 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-D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest/rowwritetest.c +[ 61%] Linking CXX executable ../../../bin/vdb-diff +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/type_matcher.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv schema-replace schema-replace.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s schema-replace.3.2.1 schema-replace.3 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sortreadtest.dir/link.d CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sortreadtest.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sortreadtest sortreadtest.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Linking CXX executable ../../../bin/vdb-diff -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 -[ 73%] Built target schema-replace +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3.2.1 sortreadtest.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 61%] Built target schema-replace make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util/CMakeFiles/samview-util.dir/DependInfo.cmake "--color=" -[ 73%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c -[ 73%] Linking CXX executable ../../../bin/rowwritetest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 +[ 61%] Built target sortreadtest +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld/CMakeFiles/testld.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/copycat.dir/link.d CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libmagic.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f copycat.3.2.1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv copycat copycat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3.2.1 copycat.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3 copycat +[ 61%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o +[ 61%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o -MF CMakeFiles/samview-util.dir/samview.c.o.d -o CMakeFiles/samview-util.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/samview-util/samview.c -[ 73%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fasterq-dump.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -MF CMakeFiles/testld.dir/testld.c.o.d -o CMakeFiles/testld.dir/testld.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld/testld.c +[ 61%] Built target copycat /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-diff.dir/link.d "CMakeFiles/vdb-diff.dir/namelist_tools.c.o" "CMakeFiles/vdb-diff.dir/coldefs.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o" "CMakeFiles/vdb-diff.dir/cmn.c.o" "CMakeFiles/vdb-diff.dir/row_by_row.c.o" "CMakeFiles/vdb-diff.dir/col_by_col.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff.c.o" -o ../../../bin/vdb-diff /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-diff.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sortreadtest.dir/link.d CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sortreadtest.3.2.1 +make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-diff vdb-diff.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sortreadtest sortreadtest.3.2.1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-diff.3.2.1 vdb-diff.3 -[ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/type_matcher.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3.2.1 sortreadtest.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-diff.3 vdb-diff -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target sortreadtest -[ 73%] Linking CXX executable ../../../bin/samview-util -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld/CMakeFiles/testld.dir/DependInfo.cmake "--color=" -[ 73%] Built target vdb-diff -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/depend -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rowwritetest.dir/link.d CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f rowwritetest.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv rowwritetest rowwritetest.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3.2.1 rowwritetest.3 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build -[ 73%] Linking CXX executable ../../../bin/copycat -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/copycat.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -MF CMakeFiles/testld.dir/testld.c.o.d -o CMakeFiles/testld.dir/testld.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld/testld.c -[ 73%] Building C object tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -[ 73%] Built target rowwritetest +[ 61%] Built target vdb-diff make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -MF CMakeFiles/txt2kdb.dir/txt2kdb.c.o.d -o CMakeFiles/txt2kdb.dir/txt2kdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb/txt2kdb.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o +[ 61%] Linking CXX executable ../../../bin/samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 +[ 61%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory/sam-factory.cpp +[ 61%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp +[ 61%] Linking CXX executable ../../../bin/testld +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable ../../../bin/rowwritetest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable ../../../bin/txt2kdb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview-util.dir/link.d "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 61%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f samview-util.3.2.1 -[ 73%] Linking CXX executable ../../../bin/fasterq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/redactval.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv samview-util samview-util.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable ../../../bin/testld cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview-util.3.2.1 samview-util.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/copycat.dir/link.d CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libmagic.so -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f copycat.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testld.dir/link.d CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f testld.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview-util.3 samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv testld testld.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3.2.1 testld.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv copycat copycat.3.2.1 -[ 73%] Built target samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3 testld +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 61%] Built target samview-util make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rowwritetest.dir/link.d CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f rowwritetest.3.2.1 +[ 61%] Built target testld make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3.2.1 copycat.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv rowwritetest rowwritetest.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3 copycat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3.2.1 rowwritetest.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/main.cpp -[ 73%] Built target copycat -make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend +make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testld.dir/link.d CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f testld.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv testld testld.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3.2.1 testld.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fasterq-dump.dir/link.d "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libksrch.a -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3 testld -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fasterq-dump.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -MF CMakeFiles/qa-stats.dir/main.cpp.o.d -o CMakeFiles/qa-stats.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/main.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.2.1 -[ 73%] Linking CXX executable ../../../bin/txt2kdb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 -[ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/redactval.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 -[ 73%] Built target testld +[ 61%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/main.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 61%] Built target rowwritetest make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/depend +[ 61%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/txt2kdb.dir/link.d CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f txt2kdb.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 fasterq-dump-driver +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/config_values.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv txt2kdb txt2kdb.3.2.1 +[ 61%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3.2.1 txt2kdb.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -MF CMakeFiles/qa-stats.dir/main.cpp.o.d -o CMakeFiles/qa-stats.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/main.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target fasterq-dump -[ 73%] Building CXX object tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o +[ 61%] Built target txt2kdb make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -MF CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o.d -o CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra/src/rnd2sra.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/DependInfo.cmake "--color=" +[ 61%] Building CXX object tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -MF CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o.d -o CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra/src/rnd2sra.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/txt2kdb.dir/link.d CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f txt2kdb.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv txt2kdb txt2kdb.3.2.1 -[ 73%] Building CXX object test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o +[ 61%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.c +[ 61%] Building CXX object test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -MF CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o.d -o CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream/custom_stream.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3.2.1 txt2kdb.3 -[ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/config_values.c +[ 62%] Linking CXX executable ../../../bin/vdb-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 +[ 62%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump.dir/link.d "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-dump vdb-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3.2.1 vdb-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 vdb-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target txt2kdb +[ 62%] Built target vdb-dump make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb/CMakeFiles/Test_VDB.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -[ 73%] Building CXX object test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o +[ 62%] Building CXX object test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o -MF CMakeFiles/Test_VDB.dir/test-vdb.cpp.o.d -o CMakeFiles/Test_VDB.dir/test-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-vdb.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.c -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp -[ 73%] Linking CXX executable ../../../bin/vdb-copy +[ 62%] Linking CXX executable ../../../bin/vdb-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-copy.dir/link.d "CMakeFiles/vdb-copy.dir/context.c.o" "CMakeFiles/vdb-copy.dir/helper.c.o" "CMakeFiles/vdb-copy.dir/coldefs.c.o" "CMakeFiles/vdb-copy.dir/get_platform.c.o" "CMakeFiles/vdb-copy.dir/copy_meta.c.o" "CMakeFiles/vdb-copy.dir/type_matcher.c.o" "CMakeFiles/vdb-copy.dir/redactval.c.o" "CMakeFiles/vdb-copy.dir/config_values.c.o" "CMakeFiles/vdb-copy.dir/vdb-copy.c.o" -o ../../../bin/vdb-copy /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-copy.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-copy vdb-copy.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3.2.1 vdb-copy.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/ncbi/vdb-copy.kfg +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target vdb-copy +make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb/CMakeFiles/Test_WVDB.dir/DependInfo.cmake "--color=" /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'void printEnvironment(bool)': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:68:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] 68 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) @@ -5467,26 +5007,28 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { | ^ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/build /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3.2.1 vdb-copy.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/ncbi/vdb-copy.kfg -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target vdb-copy -make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb/CMakeFiles/Test_WVDB.dir/DependInfo.cmake "--color=" +[ 62%] Building CXX object test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -MF CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o.d -o CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-wvdb.cpp +make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema/CMakeFiles/Test_SraSchema_Unit.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/build +make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -MF CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o.d -o CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-wvdb.cpp -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o +[ 62%] Building CXX object test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -MF CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o.d -o CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema/test-schema.cpp +[ 62%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/uuid.cpp -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o +[ 62%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp +[ 62%] Linking CXX executable ../../test-bin/Test_SraSchema_Unit +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSchema_Unit.dir/link.txt --verbose=1 In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp:36: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] @@ -5495,84 +5037,38 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 73%] Linking CXX executable ../../../test-bin/Test_KFile_Stream -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFile_Stream.dir/link.txt --verbose=1 -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF CMakeFiles/sratools.dir/service.cpp.o.d -o CMakeFiles/sratools.dir/service.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/service.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFile_Stream.dir/link.d CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -o ../../../test-bin/Test_KFile_Stream /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target Test_KFile_Stream -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp -[ 73%] Linking CXX executable ../../../bin/sra-info -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable ../../test-bin/Test_WVDB -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_WVDB.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-info.dir/link.d "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-info sra-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3.2.1 sra-info.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3 sra-info -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target sra-info -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_WVDB.dir/link.d "CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o" -o ../../test-bin/Test_WVDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSchema_Unit.dir/link.d "CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o" -o ../../test-bin/Test_SraSchema_Unit ../../ilib/libsra.a -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema/CMakeFiles/Test_SraSchema_Unit.dir/DependInfo.cmake "--color=" -[ 73%] Built target Test_WVDB +[ 62%] Built target Test_SraSchema_Unit make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search/CMakeFiles/Test_SEARCH_agrep.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -MF CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o.d -o CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema/test-schema.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o +[ 62%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/test-agrep.cpp -[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp -[ 73%] Linking CXX executable ../../test-bin/Test_SraSchema_Unit -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSchema_Unit.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSchema_Unit.dir/link.d "CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o" -o ../../test-bin/Test_SraSchema_Unit ../../ilib/libsra.a -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 62%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF CMakeFiles/sratools.dir/service.cpp.o.d -o CMakeFiles/sratools.dir/service.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/service.cpp +[ 62%] Linking CXX executable ../../test-bin/Test_WVDB +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_WVDB.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_WVDB.dir/link.d "CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o" -o ../../test-bin/Test_WVDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target Test_SraSchema_Unit +[ 62%] Built target Test_WVDB make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 74%] Building Java objects for test-ngs-java.jar +[ 62%] Linking CXX executable ../../../test-bin/Test_KFile_Stream +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFile_Stream.dir/link.txt --verbose=1 +[ 63%] Building Java objects for test-ngs-java.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources -[ 74%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -[ 75%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3SelectNew': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115649:10: warning: function may return address of local variable [-Wreturn-local-addr] -115649 | return pNew; - | ^~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115609:10: note: declared here -115609 | Select standin; - | ^~~~~~~ -[ 75%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp -Note: ngs_test_lib_load.java uses unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java -[ 75%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake -[ 75%] Creating Java archive test-ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFile_Stream.dir/link.d CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -o ../../../test-bin/Test_KFile_Stream /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target test-ngs-java +[ 63%] Built target Test_KFile_Stream make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/align-info/CMakeFiles/Build-align-info.dir/DependInfo.cmake "--color=" @@ -5581,89 +5077,101 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target Build-align-info +[ 63%] Built target Build-align-info make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Linking CXX executable ../../../bin/sam-factory -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 -[ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o +[ 63%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -MF CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-build-version.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-factory.dir/link.d "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 63%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp +[ 63%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_BuildVersion.dir/link.d "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target sam-factory +[ 63%] Built target Test_Drivertool_BuildVersion make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o +[ 63%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-filepath.cpp -[ 75%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/sqlite3.c -[ 75%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.posix.cpp -[ 75%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 -[ 75%] Linking CXX executable ../../test-bin/Test_VDB -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VDB.dir/link.txt --verbose=1 -[ 75%] Building C object test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -MF CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_BuildVersion.dir/link.d "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion +Note: ngs_test_lib_load.java uses unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java +[ 63%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +[ 63%] Creating Java archive test-ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp -[ 75%] Built target Test_Drivertool_BuildVersion -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c: In function 'main_agrep_test': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:229:13: warning: variable 'slow' set but not used [-Wunused-but-set-variable] - 229 | int32_t slow = 0; - | ^~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:228:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] - 228 | int32_t count; - | ^~~~~ +[ 63%] Built target test-ngs-java make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o +[ 63%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -MF CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-command-line.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VDB.dir/link.d "CMakeFiles/Test_VDB.dir/test-vdb.cpp.o" -o ../../test-bin/Test_VDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 63%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp +[ 63%] Linking CXX executable ../../../bin/sam-factory +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 +[ 63%] Linking CXX executable ../../../bin/sra-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-factory.dir/link.d "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 75%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -[ 75%] Built target Test_VDB +[ 63%] Built target sam-factory make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/search-vdb.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-info.dir/link.d "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-info.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-info sra-info.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3.2.1 sra-info.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3 sra-info +[ 64%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-json-parse.cpp +[ 64%] Built target sra-info make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o +[ 64%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -MF CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o.d -o CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-sdl-response.cpp +[ 64%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp +[ 64%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/sqlite3.c +[ 64%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_CommandLine.dir/link.d "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 64%] Built target Test_Drivertool_CommandLine make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o +[ 64%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -MF CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o.d -o CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-accession.cpp -[ 76%] Linking CXX executable ../../test-bin/Test_SEARCH_agrep -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SEARCH_agrep.dir/link.txt --verbose=1 +[ 64%] Linking CXX executable ../../test-bin/Test_VDB +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VDB.dir/link.txt --verbose=1 +[ 64%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.cpp:36, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-accession.cpp:39: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': @@ -5673,71 +5181,87 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SEARCH_agrep.dir/link.d "CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o" "CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o" "CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o" -o ../../test-bin/Test_SEARCH_agrep /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a -lncbi-vdb ../../ilib/libksrch.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VDB.dir/link.d "CMakeFiles/Test_VDB.dir/test-vdb.cpp.o" -o ../../test-bin/Test_VDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 76%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 -[ 76%] Built target Test_SEARCH_agrep +[ 64%] Built target Test_VDB make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_CommandLine.dir/link.d "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine +[ 65%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -MF CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o.d -o CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-uuid.cpp +[ 65%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_Accession.dir/link.d "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Test_Drivertool_CommandLine +[ 65%] Building C object test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -MF CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c +[ 65%] Built target Test_Drivertool_Accession make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c: In function 'main_agrep_test': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:229:13: warning: variable 'slow' set but not used [-Wunused-but-set-variable] + 229 | int32_t slow = 0; + | ^~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:228:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] + 228 | int32_t count; + | ^~~~~ +[ 65%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp -[ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable ../../../bin/sratools -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_Accession.dir/link.d "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession +[ 65%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/search-vdb.cpp +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp:38: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 65%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 +[ 65%] Linking CXX executable ../../test-bin/Test_SEARCH_agrep +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SEARCH_agrep.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_UUID.dir/link.d "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Test_Drivertool_Accession +[ 65%] Built target Test_Drivertool_UUID make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sratools.dir/link.d CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sratools.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sratools sratools.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sratools.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3 sratools -[ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o +[ 65%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-tool-args.cpp +[ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp +[ 66%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SEARCH_agrep.dir/link.d "CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o" "CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o" "CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o" -o ../../test-bin/Test_SEARCH_agrep /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a -lncbi-vdb ../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target sratools +[ 66%] Built target Test_SEARCH_agrep make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp:38: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Build-kdbmeta +[ 66%] Built target Build-kdbmeta +[ 66%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_FilePath.dir/link.d "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Built target Test_Drivertool_FilePath make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch/CMakeFiles/Build-prefetch.dir/DependInfo.cmake "--color=" @@ -5746,143 +5270,154 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/prefetch/CMakeFiles/Build-prefetch.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Build-prefetch +[ 66%] Built target Build-prefetch make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch/CMakeFiles/test-quality.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o +[ 66%] Building CXX object test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o -MF CMakeFiles/test-quality.dir/test-quality.cpp.o.d -o CMakeFiles/test-quality.dir/test-quality.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch/test-quality.cpp -[ 77%] Linking CXX executable ../../../test-bin/test-quality -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-quality.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_JsonParsing +[ 66%] Linking CXX executable ../../../test-bin/Test_Drivertool_JsonParsing cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_JsonParsing.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-quality.dir/link.d "CMakeFiles/test-quality.dir/test-quality.cpp.o" -o ../../../test-bin/test-quality /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_UUID.dir/link.d "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3SelectNew': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115649:10: warning: function may return address of local variable [-Wreturn-local-addr] +115649 | return pNew; + | ^~~~ +[ 66%] Linking CXX executable ../../../test-bin/test-quality +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-quality.dir/link.txt --verbose=1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115609:10: note: declared here +115609 | Select standin; + | ^~~~~~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_JsonParsing.dir/link.d "CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o" -o ../../../test-bin/Test_Drivertool_JsonParsing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target test-quality -[ 77%] Built target Test_Drivertool_UUID +[ 66%] Built target Test_Drivertool_JsonParsing make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend -make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Built target Build-srapath +make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build make[3]: Nothing to be done for 'test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Built target Build-sra-pileup +make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-quality.dir/link.d "CMakeFiles/test-quality.dir/test-quality.cpp.o" -o ../../../test-bin/test-quality /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_JsonParsing.dir/link.d "CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o" -o ../../../test-bin/Test_Drivertool_JsonParsing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Build-sra-pileup -make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend -[ 77%] Built target Test_Drivertool_JsonParsing +make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" +[ 66%] Built target test-quality +make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3VdbeExpandSql': -[ 77%] Built target Build-srapath -make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/DependInfo.cmake "--color=" +[ 66%] Built target Build-sra-stat +make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] -77729 | return sqlite3StrAccumFinish(&out); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build -[ 77%] Built target Build-sra-stat make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp +[ 66%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/test-vdb-config-model.cpp +[ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.posix.cpp +[ 66%] Linking CXX executable ../../../bin/rnd2sra +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/rnd2sra.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rnd2sra.dir/link.d CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -o ../../../bin/rnd2sra /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lstdc++fs +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Built target rnd2sra make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -77625 | char zBase[100]; /* Initial working space */ - | ^~~~~ -[ 77%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp -[ 77%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/test-vdb-config-model.cpp -[ 77%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o +[ 66%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-spec.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] -77729 | return sqlite3StrAccumFinish(&out); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -77625 | char zBase[100]; /* Initial working space */ - | ^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -[ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath -[ 77%] Linking CXX executable ../../../bin/qa-stats -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable ../../../bin/rnd2sra -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/rnd2sra.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/qa-stats.dir/link.d "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" -o ../../../bin/qa-stats -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_FilePath.dir/link.d "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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../../../test-bin/testAssemblyStatistics +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 +[ 66%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAssemblyStatistics.dir/link.d CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target qa-stats -[ 77%] Built target Test_Drivertool_FilePath +[ 66%] Built target testAssemblyStatistics make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/depend -make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd 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../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lstdc++fs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" +[ 66%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/makedb.cpp +[ 66%] Linking CXX executable ../../../bin/sratools +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 +[ 66%] Linking CXX executable ../../../bin/qa-stats +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sratools.dir/link.d CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sratools.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sratools sratools.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sratools.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3 sratools make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build +[ 66%] Built target sratools +make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build -[ 77%] Built target rnd2sra make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +[ 66%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-alias.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/qa-stats.dir/link.d "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" -o ../../../bin/qa-stats +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 66%] Built target qa-stats make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -[ 77%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/makedb.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/DependInfo.cmake "--color=" -[ 77%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-alias.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o +[ 66%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -MF CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o.d -o CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate/test-vdb-validate.cpp -[ 77%] Linking CXX executable ../../../test-bin/testAssemblyStatistics -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAssemblyStatistics.dir/link.d CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 66%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_SDLResponse.dir/link.d "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target testAssemblyStatistics +[ 66%] Built target Test_Drivertool_SDLResponse make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/DependInfo.cmake "--color=" @@ -5891,98 +5426,89 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target Build-vdb-validate +[ 66%] Built target Build-vdb-validate make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 78%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o +[ 67%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/test-sra-info.cpp -[ 78%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 -[ 78%] Linking CXX executable ../../../test-bin/vdb-dump-makedb +[ 67%] Linking CXX executable ../../../test-bin/vdb-dump-makedb cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-alias.dir/link.d "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump-makedb.dir/link.d "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 78%] Built target Test_Vdb_dump_view-alias +[ 67%] Built target vdb-dump-makedb make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info/CMakeFiles/Build-sra-info.dir/DependInfo.cmake "--color=" +[ 67%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-info/CMakeFiles/Build-sra-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump-makedb.dir/link.d "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 78%] Built target Build-sra-info -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 67%] Built target Build-sra-info make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/depend -[ 78%] Built target vdb-dump-makedb make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" -make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 68%] Building CXX object test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -MF CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o.d -o CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load/sam-platform.cpp +[ 68%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-alias.dir/link.d "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 68%] Built target Test_Vdb_dump_view-alias +make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 79%] Building CXX object test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -MF CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o.d -o CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load/sam-platform.cpp -[ 79%] Built target Build-kar +[ 68%] Built target Build-kar make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 79%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o +[ 68%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -MF CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o.d -o CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/qfiletest.c -[ 80%] Linking CXX executable ../../../test-bin/Test_KAPP_qfile +[ 68%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 +[ 69%] Linking CXX executable ../../../test-bin/Test_KAPP_qfile cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KAPP_qfile.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KAPP_qfile.dir/link.d CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_BamLoader_platform.dir/link.d "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target Test_KAPP_qfile +[ 69%] Built target Test_BamLoader_platform make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/depend +[ 69%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o +[ 69%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/test-loaderfile.cpp -[ 80%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 -[ 80%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_SDLResponse.dir/link.d "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KAPP_qfile.dir/link.d CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target Test_Drivertool_SDLResponse +[ 69%] Built target Test_KAPP_qfile make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADER.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_BamLoader_platform.dir/link.d "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o +[ 69%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -MF CMakeFiles/Test_LOADER.dir/loadertest.cpp.o.d -o CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp -[ 80%] Built target Test_BamLoader_platform -make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-regexpr.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -MF CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o.d -o CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-regexpr.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:307:117: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 307 | REQUIRE_RC ( KLoaderMeta_Write ( node, LoaderName.c_str(), __DATE__, FormatterName.c_str(), KAppVersion() ) ); | ^ @@ -5995,46 +5521,34 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:364:80: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 364 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ -[ 80%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp -[ 80%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit +make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-regexpr.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 69%] Building CXX object test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -MF CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o.d -o CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-regexpr.cpp +[ 69%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +[ 69%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 +[ 69%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 -[ 80%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VdbValidate_Unit.dir/link.d "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_ToolArgs.dir/link.d "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target Test_VdbValidate_Unit +[ 69%] Built target Test_Drivertool_ToolArgs make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align/CMakeFiles/Test_Align_samextract.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VdbValidate_Unit.dir/link.d "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o +[ 69%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/align\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -MF CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o.d -o CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/test-samextract.cpp -[ 80%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 81%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c -[ 81%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c -[ 82%] Linking CXX executable ../../../test-bin/Test_LOADER -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 -[ 82%] Linking CXX executable ../../../test-bin/Test_LOADERFILE -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADER.dir/link.d CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Test_LOADER +[ 69%] Built target Test_VdbValidate_Unit make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" @@ -6043,40 +5557,62 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c -[ 82%] Built target Build-align-cache -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADERFILE.dir/link.d "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 69%] Built target Build-align-cache make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Test_LOADERFILE make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat/CMakeFiles/Build-copycat.dir/DependInfo.cmake "--color=" -make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat/CMakeFiles/Test_KFF.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/copycat/CMakeFiles/Build-copycat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 69%] Built target Build-copycat +make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat/CMakeFiles/Test_KFF.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Build-copycat +[ 69%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/kfftest.cpp +[ 69%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3VdbeExpandSql': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] +77729 | return sqlite3StrAccumFinish(&out); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp +[ 69%] Linking CXX executable ../../../test-bin/Test_LOADERFILE +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +77625 | char zBase[100]; /* Initial working space */ + | ^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] +77729 | return sqlite3StrAccumFinish(&out); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +77625 | char zBase[100]; /* Initial working space */ + | ^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +[ 69%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADERFILE.dir/link.d "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 69%] Built target Test_LOADERFILE make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/DependInfo.cmake "--color=" -[ 82%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/kfftest.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp -[ 82%] Built target Build-make-read-filter +[ 69%] Linking CXX executable ../../../test-bin/test-vdb-config-model +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 +[ 69%] Built target Build-make-read-filter make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/DependInfo.cmake "--color=" @@ -6085,8 +5621,10 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Build-read-filter-redact +[ 69%] Built target Build-read-filter-redact +[ 70%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' @@ -6094,10 +5632,8 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Build-vdb-copy +[ 70%] Built target Build-vdb-copy make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/depend -[ 82%] Linking CXX executable ../../../test-bin/test-vdb-config-model -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' @@ -6105,82 +5641,86 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Build-vdb-diff +[ 70%] Built target Build-vdb-diff +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-vdb-config-model.dir/link.d "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build +[ 70%] Built target test-vdb-config-model make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-input.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-vdb-config-model.dir/link.d "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target test-vdb-config-model make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/DependInfo.cmake "--color=" +[ 70%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-input.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o +[ 71%] Linking CXX executable ../../../test-bin/Test_LOADER +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 +[ 71%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -MF CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o.d -o CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-output.cpp -[ 82%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c -[ 82%] Linking CXX executable ../../../test-bin/test-regexpr +[ 71%] Linking CXX executable ../../../test-bin/test-regexpr cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-regexpr.dir/link.txt --verbose=1 -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp -[ 82%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-regexpr.dir/link.d "CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o" -o ../../../test-bin/test-regexpr /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lre2 -labsl_string_view +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADER.dir/link.d CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target test-regexpr +[ 71%] Built target Test_LOADER make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-spec.dir/link.d "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 71%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -MF CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o.d -o CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-finger.cpp +[ 71%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-regexpr.dir/link.d "CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o" -o ../../../test-bin/test-regexpr /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lre2 -labsl_string_view make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target Test_Vdb_dump_view-spec +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 71%] Built target test-regexpr make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/depend -[ 82%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -MF CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o.d -o CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-finger.cpp +[ 71%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c -[ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o +[ 72%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -MF CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o.d -o CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-hashing.cpp -[ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o +[ 72%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c -[ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o +[ 72%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp +[ 72%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c +[ 72%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c -[ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o +[ 72%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c -[ 83%] Linking CXX executable ../../../test-bin/Test_Align_samextract -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable ../../../test-bin/Test_KFF +[ 72%] Linking CXX executable ../../../test-bin/Test_KFF cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFF.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFF.dir/link.d CMakeFiles/Test_KFF.dir/kfftest.cpp.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -o ../../../test-bin/Test_KFF /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmagic make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target Test_KFF +[ 72%] Built target Test_KFF +[ 72%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Align_samextract.dir/link.d "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o +[ 72%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-c++\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp -[ 83%] Built target Test_Align_samextract +[ 72%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-spec.dir/link.d "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 72%] Built target Test_Vdb_dump_view-spec make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/DependInfo.cmake "--color=" @@ -6188,79 +5728,107 @@ make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-doc.jar\ . -[ 83%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_ToolArgs.dir/link.d "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 72%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp +[ 72%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" +/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target Test_Drivertool_ToolArgs +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 72%] Built target ncbi-ngs-c++ make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 72%] Built target ngs-doc-jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target ngs-doc-jar +make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake -[ 83%] Building Java objects for ngs-examples.jar +[ 72%] Building Java objects for ngs-examples.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources -/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" -/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target ncbi-ngs-c++ +[ 72%] Built target ngs-src-jar make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/CMakeFiles/gw-dumper.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o +[ 72%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -MF CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o.d -o CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/gw-dumper.cpp -[ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o +[ 72%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp +[ 72%] Linking CXX executable ../../../test-bin/Test_Align_samextract +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Align_samextract.dir/link.d "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp -[ 83%] Built target ngs-src-jar +[ 72%] Built target Test_Align_samextract make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test/CMakeFiles/test-general-writer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o +[ 72%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -MF CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o.d -o CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp -[ 83%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit +[ 72%] Linking CXX executable ../../../test-bin/Test_qa-stats_Fingerprint +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Fingerprint.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples +[ 72%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Fingerprint.dir/link.d "CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o" -o ../../../test-bin/Test_qa-stats_Fingerprint /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 72%] Creating Java archive ngs-examples.jar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-examples.jar @java_class_filelist +[ 72%] Built target Test_qa-stats_Fingerprint +make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/bam-load.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 72%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -MF CMakeFiles/bam-load.dir/bam-loader.c.o.d -o CMakeFiles/bam-load.dir/bam-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam-loader.c +[ 73%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp +[ 73%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraInfo_Unit.dir/link.d "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples -[ 83%] Built target Test_SraInfo_Unit +[ 73%] Built target ngs-examples make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build -[ 83%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake -[ 83%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o +[ 73%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -MF CMakeFiles/latf-load.dir/spot-assembler.c.o.d -o CMakeFiles/latf-load.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c -[ 83%] Creating Java archive ngs-examples.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-examples.jar @java_class_filelist +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraInfo_Unit.dir/link.d "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 73%] Built target Test_SraInfo_Unit +make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 73%] Building CXX object tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/../../.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -MF CMakeFiles/sharq.dir/fastq_parse.cpp.o.d -o CMakeFiles/sharq.dir/fastq_parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp: In function 'void ncbi::runTest(int, const char**, const char*, const char*)': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:295:20: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] 295 | delete gw; @@ -6268,56 +5836,725 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:232:24: note: 'gw' was declared here 232 | GeneralWriter *gw; | ^~ -[ 83%] Linking CXX executable ../../../test-bin/Test_qa-stats_Fingerprint -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Fingerprint.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +[ 73%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o -MF CMakeFiles/bam-load.dir/bam.c.o.d -o CMakeFiles/bam-load.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c +[ 73%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c +[ 73%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -MF CMakeFiles/bam-load.dir/sam.c.o.d -o CMakeFiles/bam-load.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c +[ 73%] Linking CXX executable ../../../test-bin/test-general-writer +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-writer.dir/link.d "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target ngs-examples -make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/depend +[ 73%] Built target test-general-writer +make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/build +make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c -[ 83%] Linking CXX executable ../../../test-bin/test-general-writer -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 -[ 83%] Building CXX object tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/../../.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -MF CMakeFiles/sharq.dir/fastq_parse.cpp.o.d -o CMakeFiles/sharq.dir/fastq_parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Fingerprint.dir/link.d "CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o" -o ../../../test-bin/Test_qa-stats_Fingerprint /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -MF CMakeFiles/sff-load.dir/pstring.c.o.d -o CMakeFiles/sff-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -MF CMakeFiles/sff-load.dir/common-xml.c.o.d -o CMakeFiles/sff-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 73%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -MF CMakeFiles/bam-load.dir/alignment-writer.c.o.d -o CMakeFiles/bam-load.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/alignment-writer.c +[ 73%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c +[ 73%] Linking CXX executable ../../../test-bin/Test_qa-stats_Output +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Output.dir/link.txt --verbose=1 +[ 73%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/reference-writer.c +[ 74%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Output.dir/link.d "CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o" -o ../../../test-bin/Test_qa-stats_Output /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target Test_qa-stats_Fingerprint -make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/depend +[ 74%] Built target Test_qa-stats_Output +make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] + 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here + 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, + | ^~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build +make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build'. +[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 74%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sequence-writer.c +[ 74%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c +[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -MF CMakeFiles/fastq-load.dir/common-xml.c.o.d -o CMakeFiles/fastq-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -MF CMakeFiles/sff-load.dir/experiment-xml.c.o.d -o CMakeFiles/sff-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 74%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +[ 75%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -MF CMakeFiles/bam-load.dir/loader-imp.c.o.d -o CMakeFiles/bam-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c +[ 75%] Linking CXX executable ../../../test-bin/Test_qa-stats_Hashing +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Hashing.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Hashing.dir/link.d "CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o" -o ../../../test-bin/Test_qa-stats_Hashing /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 75%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/mem-bank.cpp +[ 75%] Built target Test_qa-stats_Hashing +make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/srf-load.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -MF CMakeFiles/srf-load.dir/pstring.c.o.d -o CMakeFiles/srf-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 75%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o CMakeFiles/sff-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:3599:44: warning: "/*" within comment [-Wcomment] + 3599 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:4332:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4332 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); + | ^~~~~~~~ +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 75%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -MF CMakeFiles/fastq-load.dir/run-xml.c.o.d -o CMakeFiles/fastq-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 75%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -MF CMakeFiles/bam-load.dir/low-match-count.cpp.o.d -o CMakeFiles/bam-load.dir/low-match-count.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/low-match-count.cpp +[ 75%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o CMakeFiles/latf-load.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_RunSource.dir/link.d "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 76%] Built target Test_Drivertool_RunSource +make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/abi-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target Build-general-loader +make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 76%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-loader.c +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o -MF CMakeFiles/abi-load.dir/pstring.c.o.d -o CMakeFiles/abi-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 76%] Linking CXX executable ../../../test-bin/Test_qa-stats_Input +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Input.dir/link.txt --verbose=1 +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o CMakeFiles/srf-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Input.dir/link.d "CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o" "CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o" -o ../../../test-bin/Test_qa-stats_Input /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -MF CMakeFiles/sff-load.dir/loader.c.o.d -o CMakeFiles/sff-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 76%] Built target Test_qa-stats_Input +make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/illumina-load.dir/DependInfo.cmake "--color=" +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o +[ 76%] Linking CXX executable ../../bin/gw-dumper +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 76%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -MF CMakeFiles/illumina-load.dir/pstring.c.o.d -o CMakeFiles/illumina-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); + | ^~~~~~~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/gw-dumper.dir/link.d "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 76%] Built target gw-dumper +make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/helicos-load.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 76%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -MF CMakeFiles/fastq-load.dir/sra-writer.c.o.d -o CMakeFiles/fastq-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 77%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 77%] Linking CXX executable ../../../bin/latf-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 +[ 77%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/latf-load.dir/link.d "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f latf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv latf-load latf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3.2.1 latf-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3 latf-load +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -MF CMakeFiles/abi-load.dir/experiment-xml.c.o.d -o CMakeFiles/abi-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o +[ 78%] Built target latf-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -MF CMakeFiles/pacbio-loadxml.dir/pstring.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/common-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sff-fmt.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -MF CMakeFiles/helicos-load.dir/sra-writer.c.o.d -o CMakeFiles/helicos-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 79%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 80%] Linking CXX executable ../../../bin/sff-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -MF CMakeFiles/srf-load.dir/loader.c.o.d -o CMakeFiles/srf-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-helicos.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/helicos-fmt.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-load.dir/link.d "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sff-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sff-load sff-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3.2.1 sff-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3 sff-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -MF CMakeFiles/illumina-load.dir/loader-file.c.o.d -o CMakeFiles/illumina-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 80%] Built target sff-load +make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/CMakeFiles/general-loader.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 80%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -MF CMakeFiles/general-loader.dir/general-loader.cpp.o.d -o CMakeFiles/general-loader.dir/general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/general-loader.cpp +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -MF CMakeFiles/abi-load.dir/loader.c.o.d -o CMakeFiles/abi-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/fastq-fmt.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf.c +[ 81%] Linking CXX executable ../../../bin/helicos-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:113: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: 'sha1_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 214 | class sha1_filter : public sha_filter + | ^~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:218:7: warning: 'sha224_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 218 | class sha224_filter : public sha_filter + | ^~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: 'sha256_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 222 | class sha256_filter : public sha_filter + | ^~~~~~~~~~~~~ +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-fmt.c +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -MF CMakeFiles/illumina-load.dir/loader.c.o.d -o CMakeFiles/illumina-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/helicos-load.dir/link.d "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f helicos-load.3.2.1 +[ 81%] Linking CXX executable ../../../bin/fastq-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv helicos-load helicos-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3.2.1 helicos-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 81%] Built target helicos-load +make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 82%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-illumina.c +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); + | ^~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:636:92: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 636 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( m_db, "SOFTWARE/loader", "date" ) ); + | ^ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-load.dir/link.d "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-load fastq-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3.2.1 fastq-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 82%] Built target fastq-load +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 82%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF CMakeFiles/test-general-loader.dir/testsource.cpp.o.d -o CMakeFiles/test-general-loader.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp +[ 82%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/protocol-parser.cpp +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-illumina.c +[ 83%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 83%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c +[ 83%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 83%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-absolid.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 83%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/absolid-fmt.c +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:100: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here + 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 84%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -MF CMakeFiles/srf-load.dir/ztr-huffman.c.o.d -o CMakeFiles/srf-load.dir/ztr-huffman.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-huffman.c +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp:40: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here + 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = std::__cxx11::basic_string&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = std::__cxx11::basic_string&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, int}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&, int&>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:115:36: required from here + 115 | mMessage += fmt::format(" [{}:{}]", fname, line_number); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +[ 84%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const std::__cxx11::basic_string*)(& val)))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-absolid.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:131:30: required from here + 131 | os << fmt::format("{:<70}", std::get<1>(it.second)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 84%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o CMakeFiles/illumina-load.dir/illumina-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/illumina-fmt.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] + 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); + | ^ +[ 84%] Linking CXX executable ../../../bin/abi-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 +[ 84%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pacbio-fmt.c +[ 84%] Linking CXX executable ../../../bin/srf-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 +[ 84%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/vdb-sqlite\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3vdb.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/abi-load.dir/link.d "CMakeFiles/abi-load.dir/pstring.c.o" "CMakeFiles/abi-load.dir/common-xml.c.o" "CMakeFiles/abi-load.dir/experiment-xml.c.o" "CMakeFiles/abi-load.dir/run-xml.c.o" "CMakeFiles/abi-load.dir/loader-file.c.o" "CMakeFiles/abi-load.dir/loader-fmt.c.o" "CMakeFiles/abi-load.dir/sra-writer.c.o" "CMakeFiles/abi-load.dir/loader.c.o" "CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f abi-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv abi-load abi-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-load.3.2.1 abi-load.3 +[ 84%] Linking CXX executable ../../../bin/pacbio-loadxml +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-load.3 abi-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 84%] Built target abi-load +make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srf-load.dir/link.d "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srf-load srf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3.2.1 srf-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3 srf-load +[ 84%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -MF CMakeFiles/makeinputs.dir/makeinputs.cpp.o.d -o CMakeFiles/makeinputs.dir/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/makeinputs.cpp +[ 84%] Built target srf-load +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Linking CXX executable ../../../bin/illumina-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 +[ 85%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o.d -o CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-loadxml.dir/link.d "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-loadxml.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.2.1 pacbio-loadxml.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Built target pacbio-loadxml +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/illumina-load.dir/link.d "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f illumina-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv illumina-load illumina-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3.2.1 illumina-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Built target illumina-load make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/CMakeFiles/vdb-config.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-writer.dir/link.d "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target test-general-writer make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/configure.cpp +make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Built target Build-latf-load +[ 85%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp +make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 85%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-id2name.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); + | ^~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 76 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here + 45 | GeneralWriter *gw; + | ^~ +In file included from /usr/include/c++/14/ios:42, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/general-writer/general-writer.hpp:34, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: +In static member function 'static constexpr std::size_t std::char_traits::length(const char_type*)', + inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with = std::allocator; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, + inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: +/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] + 391 | return __builtin_strlen(__s); + | ~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here + 57 | const char* db_schema; + | ^~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 101 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here + 54 | GeneralWriter *gw; + | ^~ +[ 85%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 +[ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/util.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bio-end-makeinputs.dir/link.d "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target bio-end-makeinputs +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend +[ 86%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-makeinputs.dir/link.d "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target idx-text-makeinputs +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp +[ 86%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp +[ 86%] Building C object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] + 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); + | ^ +[ 86%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 +[ 86%] Linking CXX executable ../../../../test-bin/makeinputs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.d "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target SlowTest_FastqLoader_id2name +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" +[ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/interactive2.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/makeinputs.dir/link.d CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target makeinputs make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/DependInfo.cmake "--color=" -[ 83%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/configure.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Linking CXX static library ../../lib/libngs-c++.a +[ 87%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/main.cpp +[ 87%] Linking CXX static library ../../lib/libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ngs-c++.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libngs-c++.a "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" 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"../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.d/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, spdlog::stopwatch, long unsigned int}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'void spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum, spdlog::string_view_t, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; spdlog::string_view_t = fmt::v9::basic_string_view]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:90:13: required from 'void spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum, fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 90 | log_(loc, lvl, details::to_string_view(fmt), std::forward(args)...); + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:96:12: required from 'void spdlog::logger::log(spdlog::level::level_enum, fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 96 | log(source_loc{}, lvl, fmt, std::forward(args)...); + | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:158:12: required from 'void spdlog::logger::info(fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 158 | log(level::info, fmt, std::forward(args)...); + | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/spdlog.h:170:31: required from 'void spdlog::info(fmt::v9::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, stopwatch&, long unsigned int}; fmt::v9::format_string = fmt::v9::basic_format_string, std::allocator >&, stopwatch&, long unsigned int>]' + 170 | default_logger_raw()->info(fmt, std::forward(args)...); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/spot_assembly.hpp:406:21: required from here + 406 | spdlog::info("{} Batch insert: {:.3}, {:L} reads", batch_idx, sw, new_batch.m_spot_map->size()); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/logger.h:374:75: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1, ((long unsigned int&)args#2))' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +ir/jni_ErrorMsg.c.o" /usr/bin/ranlib ../../lib/libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libngs-c++.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libngs-c++.a libngs-c++.a.3.2.1 @@ -6325,35 +6562,29 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libngs-c++.a.3 libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libngs-c++.a libngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target ngs-c++ +[ 87%] Built target ngs-c++ make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Linking CXX shared library ../../lib/libngs-c++.so +[ 87%] Linking CXX shared library ../../lib/libngs-c++.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,--dependency-file=CMakeFiles/ngs-c++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libngs-c++.so.3 -o ../../lib/libngs-c++.so.3.2.1 "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMake[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.2.1 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so -[ 83%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target ngs-c++-shared +[ 87%] Built target ngs-c++-shared make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 83%] Linking CXX static library ../../lib/libncbi-ngs.a +[ 87%] Linking CXX static library ../../lib/libncbi-ngs.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libncbi-ngs.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libncbi-ngs.a libncbi-ngs.a.3.2.1 @@ -6361,206 +6592,188 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs.a libncbi-ngs-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target ncbi-ngs +[ 87%] Built target ncbi-ngs make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/DependInfo.cmake "--color=" -[ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build +[ 87%] Linking CXX executable ../../../bin/general-loader +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Linking CXX shared library ../../lib/libncbi-ngs.so +[ 87%] Linking CXX shared library ../../lib/libncbi-ngs.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,--dependency-file=CMakeFiles/ncbi-ngs-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.2.1 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" 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"language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "langua[ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c -ge/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" 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"language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.2.1 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so +/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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"dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "langua/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/general-loader.dir/link.d "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f general-loader.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv general-loader general-loader.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s general-loader.3.2.1 general-loader.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s general-loader.3 general-loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target ncbi-ngs-shared +[ 87%] Built target general-loader make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/depend -[ 84%] Linking CXX executable ../../../test-bin/Test_qa-stats_Output -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Output.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o +[ 87%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -MF CMakeFiles/FragTest.dir/FragTest.cpp.o.d -o CMakeFiles/FragTest.dir/FragTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/FragTest.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Output.dir/link.d "CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o" -o ../../../test-bin/Test_qa-stats_Output /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +ge/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.2.1 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target Test_qa-stats_Output +[ 87%] Built target ncbi-ngs-shared make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 84%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -[ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o +[ 87%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c -[ 85%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/util.cpp -[ 85%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp -[ 85%] Linking CXX executable ../../../test-bin/FragTest +[ 87%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config-model.cpp +[ 87%] Linking CXX executable ../../../test-bin/FragTest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 -[ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o CMakeFiles/latf-load.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c -[ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FragTest.dir/link.d CMakeFiles/FragTest.dir/FragTest.cpp.o -o ../../../test-bin/FragTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-loader.c -[ 85%] Built target FragTest -[ 85%] Linking CXX executable ../../../test-bin/AlignTest +[ 87%] Built target FragTest make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o +[ 87%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -MF CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o.d -o CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignSliceTest.cpp -[ 85%] Linking CXX executable ../../bin/gw-dumper -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignTest.dir/link.d CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/gw-dumper.dir/link.d "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Built target AlignTest +[ 87%] Linking CXX executable ../../../test-bin/AlignTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/DependInfo.cmake "--color=" -[ 85%] Built target gw-dumper +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 87%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -MF CMakeFiles/PileupTest.dir/PileupTest.cpp.o.d -o CMakeFiles/PileupTest.dir/PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/PileupTest.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignTest.dir/link.d CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 87%] Built target AlignTest make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -MF CMakeFiles/latf-load.dir/loader-imp.c.o.d -o CMakeFiles/latf-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o +[ 87%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -MF CMakeFiles/RefTest.dir/RefTest.cpp.o.d -o CMakeFiles/RefTest.dir/RefTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/RefTest.cpp -[ 85%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -MF CMakeFiles/PileupTest.dir/PileupTest.cpp.o.d -o CMakeFiles/PileupTest.dir/PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/PileupTest.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); - | ^~~~~~~~ -[ 85%] Linking CXX executable ../../../test-bin/Test_qa-stats_Hashing -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Hashing.dir/link.txt --verbose=1 -[ 85%] Linking CXX executable ../../../bin/latf-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Hashing.dir/link.d "CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o" -o ../../../test-bin/Test_qa-stats_Hashing /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 87%] Linking CXX executable ../../../bin/vdb-config +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable ../../../test-bin/PileupTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/PileupTest.dir/link.d CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Built target Test_qa-stats_Hashing +[ 88%] Built target PileupTest make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-config.dir/link.d "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-config.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-config vdb-config.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-config.3.2.1 vdb-config.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f 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CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/DumpReferenceFASTA.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/latf-load.dir/link.d "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f latf-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv latf-load latf-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3.2.1 latf-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3 latf-load +[ 88%] Linking CXX executable ../../../test-bin/RefTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Built target latf-load +[ 88%] Built target vdb-config make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f 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-I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o -MF CMakeFiles/test-ngs.dir/ngstest.cpp.o.d -o CMakeFiles/test-ngs.dir/ngstest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest.cpp -[ 85%] Linking CXX executable ../../../test-bin/RefTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 -[ 85%] Linking CXX executable ../../../test-bin/AlignSliceTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RefTest.dir/link.d CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Built target RefTest +[ 88%] Built target RefTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build -[ 85%] Linking CXX executable ../../../test-bin/Test_qa-stats_Input make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Input.dir/link.txt --verbose=1 +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignSliceTest.dir/link.d CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -MF CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o.d -o CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sra.cpp -[ 85%] Built target AlignSliceTest +[ 88%] Built target AlignSliceTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -MF CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o.d -o CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sradb.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Input.dir/link.d "CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o" "CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o" -o ../../../test-bin/Test_qa-stats_Input /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 85%] Built target Test_qa-stats_Input +[ 88%] Built target Test_FastqLoader_WbFastqParse make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/DependInfo.cmake "--color=" -[ 86%] Linking CXX executable ../../../test-bin/PileupTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -MF CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o.d -o CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1.cpp -[ 86%] Linking CXX executable ../../../test-bin/test-ngs -[ 86%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/PileupTest.dir/link.d CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DumpReferenceFASTA.dir/link.d CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target PileupTest +[ 88%] Built target DumpReferenceFASTA make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -MF CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o.d -o CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_readcollection.cpp +[ 88%] Linking CXX executable ../../../test-bin/test-ngs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs.dir/link.d "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DumpReferenceFASTA.dir/link.d CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target test-ngs +[ 88%] Built target test-ngs make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/depend -[ 86%] Built target DumpReferenceFASTA make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp +[ 88%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 88%] Built target Test_FastqLoader_WbFastqLoader +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -MF CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o.d -o CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_pileup.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceWindow_Slice_Filtered::Instance::test_method()': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:591:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' @@ -6582,268 +6795,154 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:740:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' 740 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ -[ 86%] Building C object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config.c -[ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/interactive2.cpp -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp:40: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here - 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = std::__cxx11::basic_string&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = std::__cxx11::basic_string&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, int}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&, int&>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:115:36: required from here - 115 | mMessage += fmt::format(" [{}:{}]", fname, line_number); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const std::__cxx11::basic_string*)(& val)))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:131:30: required from here - 131 | os << fmt::format("{:<70}", std::get<1>(it.second)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 86%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp -[ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config-model.cpp -[ 86%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp -[ 86%] Linking CXX executable ../../../bin/vdb-config -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-config.dir/link.d "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-config.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-config vdb-config.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-config.3.2.1 vdb-config.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-config.3 vdb-config -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E copy /usr/include/ncbi-vdb/kfg/ncbi/default.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/ncbi/default.kfg +[ 88%] Linking C static library ../../ilib/libvdb-sqlite.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -P CMakeFiles/vdb-sqlite.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sqlite.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../ilib/libvdb-sqlite.a "CMakeFiles/vdb-sqlite.dir/sqlite3.c.o" "CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o" +/usr/bin/ranlib ../../ilib/libvdb-sqlite.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target vdb-config +[ 88%] Built target vdb-sqlite make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp -[ 86%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup +[ 88%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_pileup.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_pileup.dir/link.d "CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o" -o ../../../test-bin/test-ngs_csra1_pileup -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target test-ngs_csra1_pileup +[ 88%] Built target test-ngs_csra1_pileup make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -MF CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o.d -o CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_fragmentblob.cpp -[ 86%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin +[ 88%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 -[ 86%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_refwin.dir/link.d "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target test-ngs_csra1_refwin +[ 88%] Built target test-ngs_csra1_refwin make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 87%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o +[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -MF CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o.d -o CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_referenceblob.cpp -[ 87%] Linking C static library ../../ilib/libvdb-sqlite.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -P CMakeFiles/vdb-sqlite.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sqlite.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../ilib/libvdb-sqlite.a "CMakeFiles/vdb-sqlite.dir/sqlite3.c.o" "CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o" -/usr/bin/ranlib ../../ilib/libvdb-sqlite.a +[ 89%] Linking CXX executable ../../../../test-bin/test-general-loader +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 +[ 89%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-loader.dir/link.d "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 87%] Built target vdb-sqlite +[ 89%] Built target test-general-loader make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 87%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o +[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -MF CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o.d -o CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_byteblob.cpp -[ 88%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -[ 88%] Linking CXX executable ../../../bin/bam-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-load.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bam-load.dir/link.d "CMakeFiles/bam-load.dir/bam-loader.c.o" "CMakeFiles/bam-load.dir/bam.c.o" "CMakeFiles/bam-load.dir/sam.c.o" "CMakeFiles/bam-load.dir/alignment-writer.c.o" "CMakeFiles/bam-load.dir/reference-writer.c.o" "CMakeFiles/bam-load.dir/sequence-writer.c.o" "CMakeFiles/bam-load.dir/loader-imp.c.o" "CMakeFiles/bam-load.dir/mem-bank.cpp.o" "CMakeFiles/bam-load.dir/low-match-count.cpp.o" -o ../../../bin/bam-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f bam-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv bam-load bam-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3.2.1 bam-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3 bam-load +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 88%] Built target bam-load +[ 89%] Built target Test_FastqLoader_WbFastq_dflt make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o +[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -MF CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o.d -o CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRAtest.cpp -[ 89%] Linking CXX executable ../../../test-bin/test-ngs_sradb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb.dir/link.d "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target test-ngs_sradb -[ 90%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection +[ 91%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_readcollection.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_readcollection.dir/link.d "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 91%] Built target test-ngs_csra1_readcollection make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o +[ 91%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -MF CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o.d -o CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRADBtest.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_readcollection.dir/link.d "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 91%] Linking CXX executable ../../../test-bin/test-ngs_sradb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb.dir/link.d "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target test-ngs_csra1_readcollection +[ 91%] Built target test-ngs_sradb make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o +[ 91%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1test.cpp -[ 90%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_RunSource.dir/link.d "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 91%] Linking CXX executable ../../../test-bin/test-fragmentblob +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-fragmentblob.dir/link.d "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target Test_Drivertool_RunSource +[ 91%] Built target test-fragmentblob make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o +[ 91%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp -[ 90%] Linking CXX executable ../../../test-bin/test-byteblob -[ 90%] Linking CXX executable ../../../test-bin/test-fragmentblob +[ 91%] Linking CXX executable ../../../test-bin/test-ngs_sra +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra.dir/link.txt --verbose=1 +[ 91%] Linking CXX executable ../../../test-bin/test-byteblob cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-byteblob.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-fragmentblob.dir/link.d "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra.dir/link.d "CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o" -o ../../../test-bin/test-ngs_sra -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target test-fragmentblob +[ 91%] Built target test-ngs_sra make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-byteblob.dir/link.d "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build -[ 90%] Linking CXX executable ../../../test-bin/test-ngs_sra -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target test-byteblob +[ 91%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-byteblob.dir/link.d "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 91%] Built target test-byteblob make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/DependInfo.cmake "--color=" -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target Build-gw-dumper -make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend +[ 91%] Built target Build-gw-dumper +make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build +make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 91%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra.dir/link.d "CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o" -o ../../../test-bin/test-ngs_sra -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Nothing to be done for 'tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target test-ngs_sra +[ 91%] Built target Build-general-loader make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); - | ^~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:636:92: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 636 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( m_db, "SOFTWARE/loader", "date" ) ); - | ^ [ 92%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ngs-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp [ 92%] Linking CXX executable ../../../test-bin/test-ngs_csra1 @@ -6859,17 +6958,19 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF CMakeFiles/ref-variation.dir/common.cpp.o.d -o CMakeFiles/ref-variation.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp +[ 92%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ngs-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/main.cpp [ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp -[ 93%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ngs-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/main.cpp -[ 93%] Linking CXX executable ../../../test-bin/test-ngs_reference -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 -[ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/ref-variation.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_reference.dir/link.d "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 93%] Linking CXX executable ../../../bin/ngs-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-pileup.dir/link.d "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ngs-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 93%] Built target test-ngs_reference +[ 93%] Built target ngs-pileup make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation/CMakeFiles/var-expand.dir/DependInfo.cmake "--color=" @@ -6878,17 +6979,17 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp -[ 93%] Linking CXX executable ../../../bin/ngs-pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 +[ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/ref-variation.cpp [ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -MF CMakeFiles/var-expand.dir/helper.cpp.o.d -o CMakeFiles/var-expand.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-pileup.dir/link.d "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ngs-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup +[ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/var-expand.cpp +[ 93%] Linking CXX executable ../../../test-bin/test-ngs_reference +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_reference.dir/link.d "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 93%] Built target ngs-pileup +[ 93%] Built target test-ngs_reference make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" @@ -6897,14 +6998,14 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/main.cpp +[ 93%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../../../test-bin/test-referenceblob cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-referenceblob.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-referenceblob.dir/link.d "CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o" -o ../../../test-bin/test-referenceblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test-referenceblob make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/depend -[ 93%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/var-expand.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' @@ -6912,11 +7013,11 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search.cpp -[ 93%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra_c++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra_c++.dir/link.d "CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o" -o ../../../test-bin/test-ngs_sra_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 93%] Linking CXX executable ../../../bin/var-expand +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1pileup++.dir/link.d "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 93%] Built target test-ngs_sra_c++ +[ 93%] Built target test-ngs_csra1pileup++ make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/DependInfo.cmake "--color=" @@ -6925,47 +7026,43 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search-slow.cpp -[ 93%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable ../../../bin/var-expand -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/var-expand.dir/link.d "CMakeFiles/var-expand.dir/common.cpp.o" "CMakeFiles/var-expand.dir/helper.cpp.o" "CMakeFiles/var-expand.dir/var-expand.cpp.o" -o ../../../bin/var-expand ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f var-expand.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv var-expand var-expand.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s var-expand.3.2.1 var-expand.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1pileup++.dir/link.d "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s var-expand.3 var-expand make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 93%] Built target test-ngs_csra1pileup++ -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/depend [ 93%] Built target var-expand -make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/depend +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-searchblock.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra_c++.dir/link.d "CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o" -o ../../../test-bin/test-ngs_sra_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 93%] Built target test-ngs_sra_c++ +make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-searchblock.cpp [ 93%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -MF CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o.d -o CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage-ngs.cpp -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 94%] Linking CXX executable ../../../bin/ref-variation -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ref-variation.dir/link.d "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ref-variation.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ref-variation ref-variation.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3.2.1 ref-variation.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation +[ 94%] Linking CXX executable ../../../bin/compute-coverage-ngs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage-ngs.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage-ngs.dir/link.d "CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o" -o ../../../bin/compute-coverage-ngs ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f compute-coverage-ngs.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv compute-coverage-ngs compute-coverage-ngs.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3.2.1 compute-coverage-ngs.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3 compute-coverage-ngs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 94%] Built target ref-variation +[ 94%] Built target compute-coverage-ngs make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DependInfo.cmake "--color=" @@ -6974,109 +7071,100 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 95%] Linking CXX executable ../../../bin/compute-coverage-ngs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage-ngs.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage-ngs.dir/link.d "CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o" -o ../../../bin/compute-coverage-ngs ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f compute-coverage-ngs.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv compute-coverage-ngs compute-coverage-ngs.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3.2.1 compute-coverage-ngs.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3 compute-coverage-ngs +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp: In static member function 'static void DumpReferenceFASTA::process(const ngs::Reference&, const Range&)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp:184:30: warning: catching polymorphic type 'class ngs::ErrorMsg' by value [-Wcatch-value=] + 184 | catch ( ErrorMsg x ) + | ^ +[ 94%] Linking CXX executable ../../../bin/ref-variation +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ref-variation.dir/link.d "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ref-variation.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ref-variation ref-variation.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3.2.1 ref-variation.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target compute-coverage-ngs +[ 94%] Built target ref-variation make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 95%] Building C object tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o +[ 94%] Building C object tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-sql\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o -MF CMakeFiles/vdb-sql.dir/vdb_shell.c.o.d -o CMakeFiles/vdb-sql.dir/vdb_shell.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql/vdb_shell.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp: In static member function 'static void DumpReferenceFASTA::process(const ngs::Reference&, const Range&)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp:184:30: warning: catching polymorphic type 'class ngs::ErrorMsg' by value [-Wcatch-value=] - 184 | catch ( ErrorMsg x ) - | ^ -[ 95%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp -[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 96%] Linking CXX executable ../../../bin/dump-ref-fasta -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-ref-fasta.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ +[ 94%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-ref-fasta.dir/link.d "CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o" -o ../../../bin/dump-ref-fasta ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f dump-ref-fasta.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-ref-fasta dump-ref-fasta.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3.2.1 dump-ref-fasta.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3 dump-ref-fasta +[ 94%] Linking CXX executable ../../../bin/dump-ref-fasta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-ref-fasta.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb_c++.dir/link.d "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 96%] Built target dump-ref-fasta +[ 94%] Built target test-ngs_sradb_c++ make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/fastconv.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb_c++.dir/link.d "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 96%] Built target test-ngs_sradb_c++ -make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend -[ 96%] Building C object tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o +[ 94%] Building C object tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-sql\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o -MF CMakeFiles/fastconv.dir/fastconv.c.o.d -o CMakeFiles/fastconv.dir/fastconv.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql/fastconv.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-ref-fasta.dir/link.d "CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o" -o ../../../bin/dump-ref-fasta ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f dump-ref-fasta.3.2.1 +[ 95%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-ref-fasta dump-ref-fasta.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3.2.1 dump-ref-fasta.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3 dump-ref-fasta +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 95%] Built target dump-ref-fasta +make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend +[ 95%] Linking CXX executable ../../../bin/fastconv +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastconv.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -MF CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o.d -o CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats/pileup-stats.cpp -[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -[ 96%] Linking CXX executable ../../../test-bin/test-ngs-vdb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../../test-bin/Test_SraSearch_SearchBlock -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch_SearchBlock.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../bin/fastconv -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastconv.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch_SearchBlock.dir/link.d "CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o" CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -o ../../../../test-bin/Test_SraSearch_SearchBlock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lncbi-vdb ../../../../ilib/libksrch.a /usr/lib/aarch64-linux-gnu/libkapp.a -lncbi-vdb +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastconv.dir/link.d CMakeFiles/fastconv.dir/fastconv.c.o -o ../../../bin/fastconv /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastconv.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastconv fastconv.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3.2.1 fastconv.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3 fastconv make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 96%] Built target Test_SraSearch_SearchBlock +[ 95%] Built target fastconv make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o +[ 96%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/ngs/testy-the-bear\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -MF CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o.d -o CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear/testy-the-bear.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs-vdb.dir/link.d "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target test-ngs-vdb -make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. +[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 97%] Linking CXX executable ../../../../test-bin/Test_SraSearch_SearchBlock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch_SearchBlock.dir/link.txt --verbose=1 +[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch_SearchBlock.dir/link.d "CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o" CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -o ../../../../test-bin/Test_SraSearch_SearchBlock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lncbi-vdb ../../../../ilib/libksrch.a /usr/lib/aarch64-linux-gnu/libkapp.a -lncbi-vdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target Build-fasterq-dump +[ 97%] Built target Test_SraSearch_SearchBlock make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 97%] Linking CXX executable ../../../../test-bin/testy-the-bear [ 97%] Building CXX object test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastconv.dir/link.d CMakeFiles/fastconv.dir/fastconv.c.o -o ../../../bin/fastconv /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastconv.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastconv fastconv.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3.2.1 fastconv.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3 fastconv +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 +[ 97%] Linking CXX executable ../../../test-bin/test-ngs-vdb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testy-the-bear.dir/link.d "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target fastconv +[ 97%] Built target testy-the-bear make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/DependInfo.cmake "--color=" @@ -7086,15 +7174,6 @@ make[3]: Nothing to be done for 'test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target Build-ngs-pileup -make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target Build-sam-dump make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/DependInfo.cmake "--color=" @@ -7103,48 +7182,28 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target Build-vdb-config -make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target Build-bam-load -make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs-vdb.dir/link.d "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target Build-latf-load -make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend +[ 97%] Built target Build-vdb-config +make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend +[ 97%] Built target test-ngs-vdb make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" +[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build +make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-id2name.cpp -[ 97%] Linking CXX executable ../../../../test-bin/testy-the-bear -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 +[ 97%] Building CXX object test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/align\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -MF CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o.d -o CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/pileup_estimator.cpp +[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp +[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp [ 97%] Linking CXX executable ../../../bin/pileup-stats cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testy-the-bear.dir/link.d "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target testy-the-bear -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pileup-stats.dir/link.d "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pileup-stats.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pileup-stats pileup-stats.3.2.1 @@ -7152,43 +7211,24 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pileup-stats.3 pileup-stats make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target pileup-stats -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" -[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp [ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp -[ 98%] Linking CXX executable ../../../bin/vdb-sql -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sql.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-sql.dir/link.d "CMakeFiles/vdb-sql.dir/vdb_shell.c.o" -o ../../../bin/vdb-sql ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-sql.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-sql vdb-sql.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3.2.1 vdb-sql.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3 vdb-sql -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target vdb-sql -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp -[ 98%] Linking CXX executable ../../../bin/sra-search +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +[ 97%] Linking CXX executable ../../../bin/sra-search cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-search.dir/link.txt --verbose=1 -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 98%] Linking CXX executable ../../../bin/vdb-sql +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sql.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-search.dir/link.d "CMakeFiles/sra-search.dir/main.cpp.o" "CMakeFiles/sra-search.dir/searchblock.cpp.o" "CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/referencematchiterator.cpp.o" "CMakeFiles/sra-search.dir/vdb-search.cpp.o" -o ../../../bin/sra-search ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-search.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-search sra-search.3.2.1 @@ -7196,100 +7236,96 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-search.3 sra-search make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target sra-search -make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target Build-sra-sort -make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Building CXX object test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/align\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -MF CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o.d -o CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/pileup_estimator.cpp -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp -[ 98%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.d "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target SlowTest_FastqLoader_id2name make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-sql.dir/link.d "CMakeFiles/vdb-sql.dir/vdb_shell.c.o" -o ../../../bin/vdb-sql ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-sql.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-sql vdb-sql.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3.2.1 vdb-sql.3 [ 98%] Built target Build-sra-search +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3 vdb-sql [ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 98%] Built target vdb-sql +[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp [ 98%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Ngs_Pileup.dir/link.d "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target Test_Ngs_Pileup -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -[ 98%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 -[ 98%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF CMakeFiles/test-general-loader.dir/testsource.cpp.o.d -o CMakeFiles/test-general-loader.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target Test_FastqLoader_WbFastqParse -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] - 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); - | ^ [ 98%] Linking CXX executable ../../../../test-bin/Test_SraSearchSlow cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearchSlow.dir/link.txt --verbose=1 -[ 99%] Linking CXX executable ../../../../test-bin/Test_SraSearch /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearchSlow.dir/link.d "CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearchSlow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 98%] Built target Test_SraSearchSlow +[ 99%] Linking CXX executable ../../../../test-bin/Test_SraSearch cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch.dir/link.txt --verbose=1 -[ 99%] Built target Test_SraSearchSlow /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch.dir/link.d "CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o" "CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearch ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 99%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader [ 99%] Built target Test_SraSearch -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 99%] Built target Test_FastqLoader_WbFastqLoader [ 99%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_Align_estimator.dir/link.d CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target SlowTest_Align_estimator -[ 99%] Linking CXX executable ../../../../test-bin/test-general-loader -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-loader.dir/link.d "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 99%] Built target test-general-loader [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_c++.dir/link.d "CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o" -o ../../../test-bin/test-ngs_csra1_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_csra1_c++ -[ 99%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 99%] Linking CXX executable ../../../bin/bam-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-load.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bam-load.dir/link.d "CMakeFiles/bam-load.dir/bam-loader.c.o" "CMakeFiles/bam-load.dir/bam.c.o" "CMakeFiles/bam-load.dir/sam.c.o" "CMakeFiles/bam-load.dir/alignment-writer.c.o" "CMakeFiles/bam-load.dir/reference-writer.c.o" "CMakeFiles/bam-load.dir/sequence-writer.c.o" "CMakeFiles/bam-load.dir/loader-imp.c.o" "CMakeFiles/bam-load.dir/mem-bank.cpp.o" "CMakeFiles/bam-load.dir/low-match-count.cpp.o" -o ../../../bin/bam-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f bam-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv bam-load bam-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3.2.1 bam-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3 bam-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 99%] Built target bam-load +make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build +make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' -[ 99%] Built target Test_FastqLoader_WbFastq_dflt +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build +make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +[ 99%] Built target Build-fasterq-dump +[ 99%] Built target Build-sam-dump +[ 99%] Built target Build-bam-load +[ 99%] Built target Build-sra-sort [ 99%] Linking CXX executable ../../../bin/sam-analyze cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-analyze.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-analyze.dir/link.d "CMakeFiles/sam-analyze.dir/main.cpp.o" "CMakeFiles/sam-analyze.dir/sqlite3.c.o" -o ../../../bin/sam-analyze /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto @@ -7315,17 +7351,17 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -MF CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o.d -o CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-reader.cpp [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -MF CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o.d -o CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-parser.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -MF CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o.d -o CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-reader.cpp [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -MF CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o.d -o CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-writer.cpp In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, @@ -7646,7 +7682,7 @@ 9: !! 9: self.initialize_options() 9: zip_safe flag not set; analyzing archive contents... - 1/426 Test #9: Test_NGS_Python_install ................................ Passed 0.75 sec + 1/426 Test #9: Test_NGS_Python_install ................................ Passed 1.79 sec test 15 Start 15: Ngs_MakeDB @@ -7657,7 +7693,7 @@ 15: SparseFragmentBlobs (0 s) 15: 15: *** No errors detected (0 s total) - 2/426 Test #15: Ngs_MakeDB ............................................. Passed 0.11 sec + 2/426 Test #15: Ngs_MakeDB ............................................. Passed 0.25 sec test 16 Start 16: Test_Ngs @@ -7666,7 +7702,7 @@ 16: Test timeout computed to be: 1500 16: 16: *** No errors detected (0 s total) - 3/426 Test #16: Test_Ngs ............................................... Passed 0.01 sec + 3/426 Test #16: Test_Ngs ............................................... Passed 0.04 sec test 32 Start 32: Test_GeneralWriter_RoundTrip @@ -7698,7 +7734,7 @@ 32: addTable correctly failed 32: endStream Success 32: --------------------------------- - 4/426 Test #32: Test_GeneralWriter_RoundTrip ........................... Passed 0.01 sec + 4/426 Test #32: Test_GeneralWriter_RoundTrip ........................... Passed 0.08 sec test 33 Start 33: GeneralLoaderWhiteBox @@ -7772,7 +7808,7 @@ 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: -33: *** No errors detected (0 s total) +33: *** No errors detected (1 s total) 33: Packed protocol: Running 65 test cases... 33: EmptyInput (0 s) 33: ShortInput (0 s) @@ -7840,15 +7876,15 @@ 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: -33: *** No errors detected (0 s total) - 5/426 Test #33: GeneralLoaderWhiteBox .................................. Passed 0.70 sec +33: *** No errors detected (1 s total) + 5/426 Test #33: GeneralLoaderWhiteBox .................................. Passed 2.49 sec test 34 Start 34: makeinputs 34: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/makeinputs 34: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 34: Test timeout computed to be: 1500 - 6/426 Test #34: makeinputs ............................................. Passed 0.01 sec + 6/426 Test #34: makeinputs ............................................. Passed 0.04 sec test 35 Start 35: GeneralLoader-1.0-Basic-Unpacked @@ -7857,9 +7893,9 @@ 35: Test timeout computed to be: 1500 35: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1 0 35: running test case 0 -35: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +35: runtestcase.sh: line 56: test: too many arguments 35: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 7/426 Test #35: GeneralLoader-1.0-Basic-Unpacked ....................... Passed 0.00 sec + 7/426 Test #35: GeneralLoader-1.0-Basic-Unpacked ....................... Passed 0.02 sec test 36 Start 36: GeneralLoader-1.1-Basic-Packed @@ -7868,9 +7904,9 @@ 36: Test timeout computed to be: 1500 36: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1packed 0 36: running test case 0 -36: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +36: runtestcase.sh: line 56: test: too many arguments 36: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 8/426 Test #36: GeneralLoader-1.1-Basic-Packed ......................... Passed 0.00 sec + 8/426 Test #36: GeneralLoader-1.1-Basic-Packed ......................... Passed 0.02 sec test 37 Start 37: GeneralLoader-1.2-TargetDbOverride @@ -7879,9 +7915,9 @@ 37: Test timeout computed to be: 1500 37: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 --target actual/1override/db 37: running test case 0 -37: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +37: runtestcase.sh: line 56: test: too many arguments 37: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 9/426 Test #37: GeneralLoader-1.2-TargetDbOverride ..................... Passed 0.00 sec + 9/426 Test #37: GeneralLoader-1.2-TargetDbOverride ..................... Passed 0.02 sec test 38 Start 38: GeneralLoader-1.3-TargetDbOverrideShorthand @@ -7890,9 +7926,9 @@ 38: Test timeout computed to be: 1500 38: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 -T actual/1override/db 38: running test case 0 -38: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +38: runtestcase.sh: line 56: test: too many arguments 38: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 10/426 Test #38: GeneralLoader-1.3-TargetDbOverrideShorthand ............ Passed 0.00 sec + 10/426 Test #38: GeneralLoader-1.3-TargetDbOverrideShorthand ............ Passed 0.02 sec test 39 Start 39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked @@ -7901,9 +7937,9 @@ 39: Test timeout computed to be: 1500 39: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2 3 -L=err 39: running test case 3 -39: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +39: runtestcase.sh: line 56: test: too many arguments 39: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 11/426 Test #39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ........... Passed 0.00 sec + 11/426 Test #39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ........... Passed 0.02 sec test 40 Start 40: GeneralLoader-2.1-ErrorMessageEvent-Packed @@ -7912,9 +7948,9 @@ 40: Test timeout computed to be: 1500 40: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2packed 3 -L=err 40: running test case 3 -40: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +40: runtestcase.sh: line 56: test: too many arguments 40: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 12/426 Test #40: GeneralLoader-2.1-ErrorMessageEvent-Packed ............. Passed 0.00 sec + 12/426 Test #40: GeneralLoader-2.1-ErrorMessageEvent-Packed ............. Passed 0.02 sec test 41 Start 41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked @@ -7923,9 +7959,9 @@ 41: Test timeout computed to be: 1500 41: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 41: running test case 0 -41: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +41: runtestcase.sh: line 56: test: too many arguments 41: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 13/426 Test #41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked .......... Passed 0.00 sec + 13/426 Test #41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked .......... Passed 0.03 sec test 42 Start 42: GeneralLoader-3.1-EmptyDefaultValues-Packed @@ -7934,9 +7970,9 @@ 42: Test timeout computed to be: 1500 42: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 42: running test case 0 -42: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +42: runtestcase.sh: line 56: test: too many arguments 42: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 14/426 Test #42: GeneralLoader-3.1-EmptyDefaultValues-Packed ............ Passed 0.00 sec + 14/426 Test #42: GeneralLoader-3.1-EmptyDefaultValues-Packed ............ Passed 0.02 sec test 43 Start 43: GeneralLoader-4.0-MoveAheadEvent-Unpacked @@ -7945,9 +7981,9 @@ 43: Test timeout computed to be: 1500 43: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4 0 43: running test case 0 -43: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +43: runtestcase.sh: line 56: test: too many arguments 43: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 15/426 Test #43: GeneralLoader-4.0-MoveAheadEvent-Unpacked .............. Passed 0.00 sec + 15/426 Test #43: GeneralLoader-4.0-MoveAheadEvent-Unpacked .............. Passed 0.03 sec test 44 Start 44: GeneralLoader-4.1-MoveAheadEvent-Packed @@ -7956,9 +7992,9 @@ 44: Test timeout computed to be: 1500 44: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4packed 0 44: running test case 0 -44: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +44: runtestcase.sh: line 56: test: too many arguments 44: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 16/426 Test #44: GeneralLoader-4.1-MoveAheadEvent-Packed ................ Passed 0.00 sec + 16/426 Test #44: GeneralLoader-4.1-MoveAheadEvent-Packed ................ Passed 0.02 sec test 45 Start 45: GeneralLoader-5.0-IntegerConversion @@ -7967,9 +8003,9 @@ 45: Test timeout computed to be: 1500 45: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 5packed 0 45: running test case 0 -45: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator +45: runtestcase.sh: line 56: test: too many arguments 45: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. - 17/426 Test #45: GeneralLoader-5.0-IntegerConversion .................... Passed 0.00 sec + 17/426 Test #45: GeneralLoader-5.0-IntegerConversion .................... Passed 0.01 sec test 46 Start 46: GeneralLoader-6.0-SoftwareName-Unpacked @@ -7981,7 +8017,7 @@ 46: cat input/6.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stderr 46: Load succeeded, dumping and matching stdout 46: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stderr - 18/426 Test #46: GeneralLoader-6.0-SoftwareName-Unpacked ................ Passed 0.38 sec + 18/426 Test #46: GeneralLoader-6.0-SoftwareName-Unpacked ................ Passed 0.55 sec test 47 Start 47: GeneralLoader-6.1-SoftwareName-Packed @@ -7993,7 +8029,7 @@ 47: cat input/6packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stderr 47: Load succeeded, dumping and matching stdout 47: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stderr - 19/426 Test #47: GeneralLoader-6.1-SoftwareName-Packed .................. Passed 0.23 sec + 19/426 Test #47: GeneralLoader-6.1-SoftwareName-Packed .................. Passed 0.66 sec test 48 Start 48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked @@ -8005,7 +8041,7 @@ 48: cat input/7.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stderr 48: Load succeeded, dumping and matching stdout 48: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db dbmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stderr - 20/426 Test #48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked ............. Passed 0.25 sec + 20/426 Test #48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked ............. Passed 0.86 sec test 49 Start 49: GeneralLoader-7.1-MetadataAttrsDb-Packed @@ -8017,7 +8053,7 @@ 49: cat input/7packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/load.stderr 49: Load succeeded, dumping and matching stdout 49: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db dbmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/dump.stderr - 21/426 Test #49: GeneralLoader-7.1-MetadataAttrsDb-Packed ............... Passed 0.48 sec + 21/426 Test #49: GeneralLoader-7.1-MetadataAttrsDb-Packed ............... Passed 0.67 sec test 50 Start 50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked @@ -8029,7 +8065,7 @@ 50: cat input/8.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stderr 50: Load succeeded, dumping and matching stdout 50: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stderr - 22/426 Test #50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked ............ Passed 0.35 sec + 22/426 Test #50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked ............ Passed 0.67 sec test 51 Start 51: GeneralLoader-8.1-MetadataAttrsTbl-Packed @@ -8041,7 +8077,7 @@ 51: cat input/8packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stderr 51: Load succeeded, dumping and matching stdout 51: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stderr - 23/426 Test #51: GeneralLoader-8.1-MetadataAttrsTbl-Packed .............. Passed 0.45 sec + 23/426 Test #51: GeneralLoader-8.1-MetadataAttrsTbl-Packed .............. Passed 0.76 sec test 52 Start 52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked @@ -8053,7 +8089,7 @@ 52: cat input/9.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stderr 52: Load succeeded, dumping and matching stdout 52: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stderr - 24/426 Test #52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked ............ Passed 0.49 sec + 24/426 Test #52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked ............ Passed 0.88 sec test 53 Start 53: GeneralLoader-9.1-MetadataAttrsCol-Packed @@ -8065,7 +8101,7 @@ 53: cat input/9packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stderr 53: Load succeeded, dumping and matching stdout 53: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stderr - 25/426 Test #53: GeneralLoader-9.1-MetadataAttrsCol-Packed .............. Passed 0.39 sec + 25/426 Test #53: GeneralLoader-9.1-MetadataAttrsCol-Packed .............. Passed 0.91 sec test 54 Start 54: bio-end-makeinputs @@ -8080,7 +8116,7 @@ 55: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 55: Test timeout computed to be: 1500 55: running test bio-end:excl-1 - 27/426 Test #55: BioEnd-Excl-1 .......................................... Passed 0.34 sec + 27/426 Test #55: BioEnd-Excl-1 .......................................... Passed 0.58 sec test 56 Start 56: BioEnd-Excl-2 @@ -8088,7 +8124,7 @@ 56: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 56: Test timeout computed to be: 1500 56: running test bio-end:excl-2 - 28/426 Test #56: BioEnd-Excl-2 .......................................... Passed 0.34 sec + 28/426 Test #56: BioEnd-Excl-2 .......................................... Passed 0.61 sec test 57 Start 57: BioEnd-Excl-3 @@ -8096,7 +8132,7 @@ 57: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 57: Test timeout computed to be: 1500 57: running test bio-end:excl-3 - 29/426 Test #57: BioEnd-Excl-3 .......................................... Passed 0.12 sec + 29/426 Test #57: BioEnd-Excl-3 .......................................... Passed 0.47 sec test 58 Start 58: BioEnd-Excl-4 @@ -8104,7 +8140,7 @@ 58: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 58: Test timeout computed to be: 1500 58: running test bio-end:excl-4 - 30/426 Test #58: BioEnd-Excl-4 .......................................... Passed 0.32 sec + 30/426 Test #58: BioEnd-Excl-4 .......................................... Passed 0.50 sec test 59 Start 59: BioEnd-Incl-1 @@ -8112,7 +8148,7 @@ 59: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 59: Test timeout computed to be: 1500 59: running test bio-end:incl-1 - 31/426 Test #59: BioEnd-Incl-1 .......................................... Passed 0.34 sec + 31/426 Test #59: BioEnd-Incl-1 .......................................... Passed 0.50 sec test 60 Start 60: IdxText-CI-1 @@ -8120,14 +8156,14 @@ 60: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 60: Test timeout computed to be: 1500 60: running test bio-end:excl-1 - 32/426 Test #60: IdxText-CI-1 ........................................... Passed 0.38 sec + 32/426 Test #60: IdxText-CI-1 ........................................... Passed 0.68 sec test 61 Start 61: idx-text-makeinputs 61: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-makeinputs 61: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 61: Test timeout computed to be: 1500 - 33/426 Test #61: idx-text-makeinputs .................................... Passed 0.02 sec + 33/426 Test #61: idx-text-makeinputs .................................... Passed 0.03 sec test 62 Start 62: IdxText-ci-1 @@ -8135,7 +8171,7 @@ 62: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 62: Test timeout computed to be: 1500 62: running test idx-text:ci-1 - 34/426 Test #62: IdxText-ci-1 ........................................... Passed 0.37 sec + 34/426 Test #62: IdxText-ci-1 ........................................... Passed 0.61 sec test 63 Start 63: IdxText-ci-2 @@ -8143,7 +8179,7 @@ 63: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 63: Test timeout computed to be: 1500 63: running test idx-text:ci-2 - 35/426 Test #63: IdxText-ci-2 ........................................... Passed 0.30 sec + 35/426 Test #63: IdxText-ci-2 ........................................... Passed 0.57 sec test 64 Start 64: IdxText-ci-3 @@ -8151,7 +8187,7 @@ 64: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 64: Test timeout computed to be: 1500 64: running test idx-text:ci-3 - 36/426 Test #64: IdxText-ci-3 ........................................... Passed 0.38 sec + 36/426 Test #64: IdxText-ci-3 ........................................... Passed 0.55 sec test 65 Start 65: IdxText-ci-4 @@ -8159,7 +8195,7 @@ 65: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 65: Test timeout computed to be: 1500 65: running test idx-text:ci-4 - 37/426 Test #65: IdxText-ci-4 ........................................... Passed 0.35 sec + 37/426 Test #65: IdxText-ci-4 ........................................... Passed 0.77 sec test 66 Start 66: IdxText-ci-5 @@ -8167,7 +8203,7 @@ 66: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 66: Test timeout computed to be: 1500 66: running test idx-text:ci-5 - 38/426 Test #66: IdxText-ci-5 ........................................... Passed 0.27 sec + 38/426 Test #66: IdxText-ci-5 ........................................... Passed 0.61 sec test 67 Start 67: IdxText-cs-1 @@ -8175,7 +8211,7 @@ 67: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 67: Test timeout computed to be: 1500 67: running test idx-text:cs-1 - 39/426 Test #67: IdxText-cs-1 ........................................... Passed 0.33 sec + 39/426 Test #67: IdxText-cs-1 ........................................... Passed 0.63 sec test 68 Start 68: IdxText-cs-2 @@ -8183,7 +8219,7 @@ 68: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 68: Test timeout computed to be: 1500 68: running test idx-text:cs-2 - 40/426 Test #68: IdxText-cs-2 ........................................... Passed 0.35 sec + 40/426 Test #68: IdxText-cs-2 ........................................... Passed 0.58 sec test 69 Start 69: IdxText-cs-3 @@ -8191,25 +8227,25 @@ 69: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 69: Test timeout computed to be: 1500 69: running test idx-text:cs-3 - 41/426 Test #69: IdxText-cs-3 ........................................... Passed 0.12 sec + 41/426 Test #69: IdxText-cs-3 ........................................... Passed 0.46 sec test 70 Start 70: Ref-Variation-1.0 70: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "ref-variation" 70: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 70: Test timeout computed to be: 1500 -70: ./have-access.sh: 6: vdb-config: not found +70: ./have-access.sh: line 6: vdb-config: command not found 70: no access to repository, skipping ref-variation test... - 42/426 Test #70: Ref-Variation-1.0 ...................................... Passed 0.02 sec + 42/426 Test #70: Ref-Variation-1.0 ...................................... Passed 0.04 sec test 71 Start 71: Var-Expand-1.0 71: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "var-expand" 71: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 71: Test timeout computed to be: 1500 -71: ./have-access.sh: 6: vdb-config: not found +71: ./have-access.sh: line 6: vdb-config: command not found 71: no access to repository, skipping var-expand test... - 43/426 Test #71: Var-Expand-1.0 ......................................... Passed 0.02 sec + 43/426 Test #71: Var-Expand-1.0 ......................................... Passed 0.03 sec test 74 Start 74: Test_SraSearch_SearchBlock @@ -8227,7 +8263,7 @@ 74: SearchSmithWaterman_Coords_NotSupported (0 s) 74: 74: *** No errors detected (0 s total) - 44/426 Test #74: Test_SraSearch_SearchBlock ............................. Passed 0.02 sec + 44/426 Test #74: Test_SraSearch_SearchBlock ............................. Passed 0.07 sec test 75 Start 75: Test_SraSearchBlockWhiteBox @@ -8245,7 +8281,7 @@ 75: SearchSmithWaterman_Coords_NotSupported (0 s) 75: 75: *** No errors detected (0 s total) - 45/426 Test #75: Test_SraSearchBlockWhiteBox ............................ Passed 0.02 sec + 45/426 Test #75: Test_SraSearchBlockWhiteBox ............................ Passed 0.03 sec test 78 Start 78: Test_SraSearch-1.0-h @@ -8253,7 +8289,7 @@ 78: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 78: Test timeout computed to be: 1500 78: running test case 1.0-h... passed - 46/426 Test #78: Test_SraSearch-1.0-h ................................... Passed 0.01 sec + 46/426 Test #78: Test_SraSearch-1.0-h ................................... Passed 0.15 sec test 79 Start 79: Test_SraSearch-1.1-help @@ -8261,7 +8297,7 @@ 79: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 79: Test timeout computed to be: 1500 79: running test case 1.1-help... passed - 47/426 Test #79: Test_SraSearch-1.1-help ................................ Passed 0.01 sec + 47/426 Test #79: Test_SraSearch-1.1-help ................................ Passed 0.14 sec test 80 Start 80: Test_SraSearch-1.2-V @@ -8269,7 +8305,7 @@ 80: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 80: Test timeout computed to be: 1500 80: sra-search : 3.2.1 - 48/426 Test #80: Test_SraSearch-1.2-V ................................... Passed 0.01 sec + 48/426 Test #80: Test_SraSearch-1.2-V ................................... Passed 0.03 sec test 81 Start 81: SraSearch-1.3-version @@ -8277,7 +8313,7 @@ 81: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 81: Test timeout computed to be: 1500 81: sra-search : 3.2.1 - 49/426 Test #81: SraSearch-1.3-version .................................. Passed 0.01 sec + 49/426 Test #81: SraSearch-1.3-version .................................. Passed 0.06 sec test 82 Start 82: Test_SraSearch-2.0-no-args @@ -8285,7 +8321,7 @@ 82: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 82: Test timeout computed to be: 1500 82: running test case 2.0-no-args... passed - 50/426 Test #82: Test_SraSearch-2.0-no-args ............................. Passed 0.01 sec + 50/426 Test #82: Test_SraSearch-2.0-no-args ............................. Passed 0.25 sec test 83 Start 83: Test_SraSearch-2.1-no-run @@ -8293,7 +8329,7 @@ 83: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 83: Test timeout computed to be: 1500 83: running test case 2.1-no-run... passed - 51/426 Test #83: Test_SraSearch-2.1-no-run .............................. Passed 0.01 sec + 51/426 Test #83: Test_SraSearch-2.1-no-run .............................. Passed 0.28 sec test 84 Start 84: Test_SraSearch-2.2-missing-algorithm @@ -8301,7 +8337,7 @@ 84: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 84: Test timeout computed to be: 1500 84: running test case 2.2-missing-algorithm... passed - 52/426 Test #84: Test_SraSearch-2.2-missing-algorithm ................... Passed 0.01 sec + 52/426 Test #84: Test_SraSearch-2.2-missing-algorithm ................... Passed 0.25 sec test 85 Start 85: Test_SraSearch-2.3-bad-algorithm @@ -8309,7 +8345,7 @@ 85: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 85: Test timeout computed to be: 1500 85: running test case 2.3-bad-algorithm... passed - 53/426 Test #85: Test_SraSearch-2.3-bad-algorithm ....................... Passed 0.01 sec + 53/426 Test #85: Test_SraSearch-2.3-bad-algorithm ....................... Passed 0.26 sec test 102 Start 102: Test_SraSearch-6.0.1-imperfect-match-no-arg @@ -8317,7 +8353,7 @@ 102: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 102: Test timeout computed to be: 1500 102: running test case 6.0.1-imperfect-match-no-arg... passed - 54/426 Test #102: Test_SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.01 sec + 54/426 Test #102: Test_SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.16 sec test 103 Start 103: Test_SraSearch-6.0.2-imperfect-match-bad-arg @@ -8325,7 +8361,7 @@ 103: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 103: Test timeout computed to be: 1500 103: running test case 6.0.2-imperfect-match-bad-arg... passed - 55/426 Test #103: Test_SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.06 sec + 55/426 Test #103: Test_SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.20 sec test 104 Start 104: Test_SraSearch-6.0.3-imperfect-match-default @@ -8333,7 +8369,7 @@ 104: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 104: Test timeout computed to be: 1500 104: running test case 6.0.3-imperfect-match-default... passed - 56/426 Test #104: Test_SraSearch-6.0.3-imperfect-match-default ........... Passed 0.10 sec + 56/426 Test #104: Test_SraSearch-6.0.3-imperfect-match-default ........... Passed 0.16 sec test 105 Start 105: Test_SraSearch-6.1-imperfect-match-fgrep-standard @@ -8357,7 +8393,7 @@ 107: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 107: Test timeout computed to be: 1500 107: running test case 6.3-imperfect-match-fgrep-aho... passed - 59/426 Test #107: Test_SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.13 sec + 59/426 Test #107: Test_SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.17 sec test 112 Start 112: SraSearch-6.8-imperfect-match-nucstrstr @@ -8365,7 +8401,7 @@ 112: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 112: Test timeout computed to be: 1500 112: running test case 6.8-imperfect-match-nucstrstr... passed - 60/426 Test #112: SraSearch-6.8-imperfect-match-nucstrstr ................ Passed 0.10 sec + 60/426 Test #112: SraSearch-6.8-imperfect-match-nucstrstr ................ Passed 0.13 sec test 114 Start 114: Test_SraSearch-7.0.1-threads-no-arg @@ -8373,7 +8409,7 @@ 114: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 114: Test timeout computed to be: 1500 114: running test case 7.0.1-threads-no-arg... passed - 61/426 Test #114: Test_SraSearch-7.0.1-threads-no-arg .................... Passed 0.19 sec + 61/426 Test #114: Test_SraSearch-7.0.1-threads-no-arg .................... Passed 0.22 sec test 115 Start 115: Test_SraSearch-7.0.2-threads-bad-arg @@ -8381,7 +8417,7 @@ 115: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 115: Test timeout computed to be: 1500 115: running test case 7.0.2-threads-bad-arg... passed - 62/426 Test #115: Test_SraSearch-7.0.2-threads-bad-arg ................... Passed 0.18 sec + 62/426 Test #115: Test_SraSearch-7.0.2-threads-bad-arg ................... Passed 0.26 sec test 120 Start 120: SlowTest_SraSearch-8.0-nothing-found @@ -8389,7 +8425,7 @@ 120: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 120: Test timeout computed to be: 1500 120: running test case 8.0-nothing-found... passed - 63/426 Test #120: SlowTest_SraSearch-8.0-nothing-found ................... Passed 0.18 sec + 63/426 Test #120: SlowTest_SraSearch-8.0-nothing-found ................... Passed 0.27 sec test 124 Start 124: Test_SraSearch-9.3-reference-expression @@ -8397,7 +8433,7 @@ 124: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 124: Test timeout computed to be: 1500 124: running test case 9.3-reference-expression... passed - 64/426 Test #124: Test_SraSearch-9.3-reference-expression ................ Passed 0.20 sec + 64/426 Test #124: Test_SraSearch-9.3-reference-expression ................ Passed 0.23 sec test 126 Start 126: dump-ref-fasta-1.0-h @@ -8406,7 +8442,7 @@ 126: Test timeout computed to be: 1500 126: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta 1.0-h --args -h 126: running test case 1.0-h... passed - 65/426 Test #126: dump-ref-fasta-1.0-h ................................... Passed 0.18 sec + 65/426 Test #126: dump-ref-fasta-1.0-h ................................... Passed 0.26 sec test 127 Start 127: dump-ref-fasta-1.1-help @@ -8415,7 +8451,7 @@ 127: Test timeout computed to be: 1500 127: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta 1.1-help --args --help 127: running test case 1.1-help... passed - 66/426 Test #127: dump-ref-fasta-1.1-help ................................ Passed 0.19 sec + 66/426 Test #127: dump-ref-fasta-1.1-help ................................ Passed 0.30 sec test 128 Start 128: dump-ref-fasta-1.2-V @@ -8423,7 +8459,7 @@ 128: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 128: Test timeout computed to be: 1500 128: dump-ref-fasta : 3.2.1 - 67/426 Test #128: dump-ref-fasta-1.2-V ................................... Passed 0.07 sec + 67/426 Test #128: dump-ref-fasta-1.2-V ................................... Passed 0.16 sec test 129 Start 129: dump-ref-fasta-1.3-v @@ -8431,7 +8467,7 @@ 129: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 129: Test timeout computed to be: 1500 129: dump-ref-fasta : 3.2.1 - 68/426 Test #129: dump-ref-fasta-1.3-v ................................... Passed 0.07 sec + 68/426 Test #129: dump-ref-fasta-1.3-v ................................... Passed 0.19 sec test 130 Start 130: dump-ref-fasta-1.4-version @@ -8439,7 +8475,7 @@ 130: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 130: Test timeout computed to be: 1500 130: dump-ref-fasta : 3.2.1 - 69/426 Test #130: dump-ref-fasta-1.4-version ............................. Passed 0.07 sec + 69/426 Test #130: dump-ref-fasta-1.4-version ............................. Passed 0.15 sec test 138 Start 138: PileupStats-Version @@ -8447,7 +8483,7 @@ grep -q `head -n 1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/toolkit.vers`" 138: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 138: Test timeout computed to be: 1500 - 70/426 Test #138: PileupStats-Version .................................... Passed 0.05 sec + 70/426 Test #138: PileupStats-Version .................................... Passed 0.06 sec test 139 Start 139: PileupStats-Help @@ -8485,8 +8521,7 @@ 140: 140: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 140: -140: /usr/bin/sh: 1: [: 3: unexpected operator - 72/426 Test #140: PileupStats-NoArgs ..................................... Passed 0.03 sec + 72/426 Test #140: PileupStats-NoArgs ..................................... Passed 0.02 sec test 141 Start 141: PileupStats-IgnoreArgs-L @@ -8517,8 +8552,7 @@ 141: 141: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 141: -141: /usr/bin/sh: 1: [: 3: unexpected operator - 73/426 Test #141: PileupStats-IgnoreArgs-L ............................... Passed 0.03 sec + 73/426 Test #141: PileupStats-IgnoreArgs-L ............................... Passed 0.05 sec test 142 Start 142: PileupStats-IgnoreArgs-z @@ -8549,8 +8583,7 @@ 142: 142: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 142: -142: /usr/bin/sh: 1: [: 3: unexpected operator - 74/426 Test #142: PileupStats-IgnoreArgs-z ............................... Passed 0.02 sec + 74/426 Test #142: PileupStats-IgnoreArgs-z ............................... Passed 0.04 sec test 143 Start 143: PileupStats-IgnoreArgs-loglevel @@ -8581,8 +8614,7 @@ 143: 143: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 143: -143: /usr/bin/sh: 1: [: 3: unexpected operator - 75/426 Test #143: PileupStats-IgnoreArgs-loglevel ........................ Passed 0.03 sec + 75/426 Test #143: PileupStats-IgnoreArgs-loglevel ........................ Passed 0.05 sec test 144 Start 144: PileupStats-IgnoreArgs-xmllog @@ -8613,8 +8645,7 @@ 144: 144: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 144: -144: /usr/bin/sh: 1: [: 3: unexpected operator - 76/426 Test #144: PileupStats-IgnoreArgs-xmllog .......................... Passed 0.04 sec + 76/426 Test #144: PileupStats-IgnoreArgs-xmllog .......................... Passed 0.07 sec test 145 Start 145: PileupStats-IgnoreArgs-xmllogfd @@ -8645,7 +8676,6 @@ 145: 145: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 145: -145: /usr/bin/sh: 1: [: 3: unexpected operator 77/426 Test #145: PileupStats-IgnoreArgs-xmllogfd ........................ Passed 0.02 sec test 147 Start 147: Test_VDB @@ -8699,8 +8729,8 @@ 147: RawData_value_badCast (0 s) 147: RawData_value (0 s) 147: -147: *** No errors detected (1 s total) - 78/426 Test #147: Test_VDB ............................................... Passed 1.16 sec +147: *** No errors detected (3 s total) + 78/426 Test #147: Test_VDB ............................................... Passed 3.77 sec test 148 Start 148: Test_WVDB @@ -8708,11 +8738,11 @@ 148: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb 148: Test timeout computed to be: 1500 148: Running 2 test cases... -148: PlatformNames (1 s) +148: PlatformNames (4 s) 148: ProductionSchema (0 s) 148: -148: *** No errors detected (1 s total) - 79/426 Test #148: Test_WVDB .............................................. Passed 1.14 sec +148: *** No errors detected (4 s total) + 79/426 Test #148: Test_WVDB .............................................. Passed 4.59 sec test 149 Start 149: Test_SraSchema_Unit @@ -8723,7 +8753,7 @@ 149: UseSraFunction (0 s) 149: 149: *** No errors detected (0 s total) - 80/426 Test #149: Test_SraSchema_Unit .................................... Passed 0.05 sec + 80/426 Test #149: Test_SraSchema_Unit .................................... Passed 0.23 sec test 150 Start 150: Test_SraSchema_454_db @@ -8733,7 +8763,7 @@ 150: VDB_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu 150: VDB_SRCDIR=/usr/include/ncbi-vdb/.. 150: Test timeout computed to be: 1500 - 81/426 Test #150: Test_SraSchema_454_db .................................. Passed 0.14 sec + 81/426 Test #150: Test_SraSchema_454_db .................................. Passed 0.70 sec test 151 Start 151: Test_SraSchema_IonTorrent_db @@ -8743,7 +8773,7 @@ 151: VDB_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu 151: VDB_SRCDIR=/usr/include/ncbi-vdb/.. 151: Test timeout computed to be: 1500 - 82/426 Test #151: Test_SraSchema_IonTorrent_db ........................... Passed 0.15 sec + 82/426 Test #151: Test_SraSchema_IonTorrent_db ........................... Passed 0.65 sec test 152 Start 152: Test_SEARCH_agrep @@ -8794,7 +8824,7 @@ 152: Nucstrstr_NonPositional_4NA_Found_InMiddle (0 s) 152: 152: *** No errors detected (0 s total) - 83/426 Test #152: Test_SEARCH_agrep ...................................... Passed 0.01 sec + 83/426 Test #152: Test_SEARCH_agrep ...................................... Passed 0.04 sec test 153 Start 153: Test_NgsJava_lib_load @@ -8803,11 +8833,11 @@ 153: Test timeout computed to be: 1500 153: JUnit version 4.11 153: ......... -153: Time: 0.098 +153: Time: 0.36 153: 153: OK (9 tests) 153: - 84/426 Test #153: Test_NgsJava_lib_load .................................. Passed 0.33 sec + 84/426 Test #153: Test_NgsJava_lib_load .................................. Passed 1.50 sec test 157 Start 157: Test_Align_Info_H @@ -8847,7 +8877,7 @@ 157: 157: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/align-info : 3.2.1 157: - 85/426 Test #157: Test_Align_Info_H ...................................... Passed 0.01 sec + 85/426 Test #157: Test_Align_Info_H ...................................... Passed 0.06 sec test 159 Start 159: Test_Drivertool_BuildVersion @@ -8855,7 +8885,7 @@ 159: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 159: Test timeout computed to be: 1500 159: Test_Version passed. - 86/426 Test #159: Test_Drivertool_BuildVersion ........................... Passed 0.00 sec + 86/426 Test #159: Test_Drivertool_BuildVersion ........................... Passed 0.02 sec test 160 Start 160: Test_Drivertool_FilePath @@ -8894,7 +8924,7 @@ 160: Executable_Yes (0 s) 160: 160: *** No errors detected (0 s total) - 87/426 Test #160: Test_Drivertool_FilePath ............................... Passed 0.01 sec + 87/426 Test #160: Test_Drivertool_FilePath ............................... Passed 0.03 sec test 161 Start 161: Test_Drivertool_CommandLine @@ -8902,35 +8932,35 @@ 161: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 161: Test timeout computed to be: 1500 161: Test_CommandLine passed. - 88/426 Test #161: Test_Drivertool_CommandLine ............................ Passed 0.00 sec + 88/426 Test #161: Test_Drivertool_CommandLine ............................ Passed 0.02 sec test 162 Start 162: Test_Drivertool_JsonParsing 162: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_JsonParsing 162: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 162: Test timeout computed to be: 1500 - 89/426 Test #162: Test_Drivertool_JsonParsing ............................ Passed 0.01 sec + 89/426 Test #162: Test_Drivertool_JsonParsing ............................ Passed 0.05 sec test 163 Start 163: Test_Drivertool_SDLResponse 163: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_SDLResponse 163: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 163: Test timeout computed to be: 1500 - 90/426 Test #163: Test_Drivertool_SDLResponse ............................ Passed 0.00 sec + 90/426 Test #163: Test_Drivertool_SDLResponse ............................ Passed 0.01 sec test 164 Start 164: Test_Drivertool_Accession 164: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_Accession 164: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 164: Test timeout computed to be: 1500 - 91/426 Test #164: Test_Drivertool_Accession .............................. Passed 0.00 sec + 91/426 Test #164: Test_Drivertool_Accession .............................. Passed 0.02 sec test 165 Start 165: Test_Drivertool_UUID 165: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_UUID 165: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 165: Test timeout computed to be: 1500 - 92/426 Test #165: Test_Drivertool_UUID ................................... Passed 0.20 sec + 92/426 Test #165: Test_Drivertool_UUID ................................... Passed 0.72 sec test 166 Start 166: Test_Drivertool_RunSource @@ -8967,7 +8997,7 @@ 166: ConstructSDL_Encrypted_NoNGC_Skipped (0 s) 166: 166: *** No errors detected (0 s total) - 93/426 Test #166: Test_Drivertool_RunSource .............................. Passed 0.01 sec + 93/426 Test #166: Test_Drivertool_RunSource .............................. Passed 0.03 sec test 167 Start 167: Test_Drivertool_ToolArgs @@ -8978,7 +9008,7 @@ 167: ParseArgs (0 s) 167: 167: *** No errors detected (0 s total) - 94/426 Test #167: Test_Drivertool_ToolArgs ............................... Passed 0.01 sec + 94/426 Test #167: Test_Drivertool_ToolArgs ............................... Passed 0.04 sec test 168 Start 168: Test_FasterqDump_Help @@ -9055,7 +9085,7 @@ 168: 168: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump : 3.2.1 168: - 95/426 Test #168: Test_FasterqDump_Help .................................. Passed 0.01 sec + 95/426 Test #168: Test_FasterqDump_Help .................................. Passed 0.10 sec test 169 Start 169: Test_FasterqDump_NotZeroWithoutParameters @@ -9132,7 +9162,7 @@ 169: 169: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump : 3.2.1 169: - 96/426 Test #169: Test_FasterqDump_NotZeroWithoutParameters .............. Passed 0.01 sec + 96/426 Test #169: Test_FasterqDump_NotZeroWithoutParameters .............. Passed 0.03 sec test 171 Start 171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id @@ -9145,7 +9175,7 @@ 171: READ_ID1: 10 171: READ_ID2: 10 171: success testing read-id for --fasta-unsorted mode on flat table - 97/426 Test #171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ........ Passed 0.18 sec + 97/426 Test #171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ........ Passed 0.68 sec test 172 Start 172: Test_FasterDump_Fasta_unsorted_cSRA_read_id @@ -9158,37 +9188,26 @@ 172: READ_ID1: 10 172: READ_ID2: 10 172: success testing read-id for --fasta-unsorted mode on cSRA table - 98/426 Test #172: Test_FasterDump_Fasta_unsorted_cSRA_read_id ............ Passed 0.44 sec + 98/426 Test #172: Test_FasterDump_Fasta_unsorted_cSRA_read_id ............ Passed 1.58 sec test 173 Start 173: Test_Tiny_cSRA 173: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump" "sh" "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb"' > tmp.kfg; ./tiny_csra.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 173: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 173: Test timeout computed to be: 1500 -173: ./tiny_csra.sh: 17: [[: not found -173: ./tiny_csra.sh: 26: [[: not found -173: ./tiny_csra.sh: 32: [[: not found -173: ./tiny_csra.sh: 38: [[: not found -173: -e +173: 173: testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump on tiny cSRA-accession -173: ./tiny_csra.sh: 46: [[: not found -173: ./tiny_csra.sh: 65: [[: not found -173: ./tiny_csra.sh: 70: [[: not found -173: ./tiny_csra.sh: 75: [[: not found -173: ./tiny_csra.sh: 86: [[: not found -173: ./tiny_csra.sh: 99: [[: not found 173: spots read : 3 173: reads read : 3 173: reads written : 3 -173: ./tiny_csra.sh: 111: [[: not found - 99/426 Test #173: Test_Tiny_cSRA ......................................... Passed 0.97 sec + 99/426 Test #173: Test_Tiny_cSRA ......................................... Passed 2.94 sec test 182 Start 182: Test_Prefetch_In_PATH 182: Test command: /usr/bin/cmake "-E" "env" "PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin:/bin" "sh" "-c" "prefetch -h > /dev/null" 182: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch 182: Test timeout computed to be: 1500 -100/426 Test #182: Test_Prefetch_In_PATH .................................. Passed 0.06 sec +100/426 Test #182: Test_Prefetch_In_PATH .................................. Passed 0.17 sec test 190 Start 190: SamDumpTestSetup @@ -9196,21 +9215,21 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-sam-dump-test"' > tmp.kfg" 190: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 190: Test timeout computed to be: 1500 -101/426 Test #190: SamDumpTestSetup ....................................... Passed 0.01 sec +101/426 Test #190: SamDumpTestSetup ....................................... Passed 0.02 sec test 191 Start 191: Test_sam_dump_verify_omit 191: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./verify_omit_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 191: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 191: Test timeout computed to be: 1500 -102/426 Test #191: Test_sam_dump_verify_omit .............................. Passed 1.11 sec +102/426 Test #191: Test_sam_dump_verify_omit .............................. Passed 3.61 sec test 192 Start 192: Test_sam_dump_star_quality 192: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./print_star_on_missing_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 192: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 192: Test timeout computed to be: 1500 -103/426 Test #192: Test_sam_dump_star_quality ............................. Passed 0.69 sec +103/426 Test #192: Test_sam_dump_star_quality ............................. Passed 2.95 sec test 193 Start 193: Test_Srapath_Check_exit_code @@ -9218,7 +9237,7 @@ 193: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath 193: Test timeout computed to be: 1500 193: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/srapath] -104/426 Test #193: Test_Srapath_Check_exit_code ........................... Passed 0.06 sec +104/426 Test #193: Test_Srapath_Check_exit_code ........................... Passed 0.35 sec test 195 Start 195: Test_SraPileup_Check_exit_code @@ -9227,7 +9246,7 @@ 195: Test timeout computed to be: 1500 195: WARNING[TEST1] help message is in 'STDOUT' 195: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-pileup] -105/426 Test #195: Test_SraPileup_Check_exit_code ......................... Passed 0.10 sec +105/426 Test #195: Test_SraPileup_Check_exit_code ......................... Passed 0.40 sec test 200 Start 200: Test_VDB_Config_model @@ -9251,7 +9270,7 @@ 200: 200: *** 1 failure detected in test suite "VdbConfStridesModelTestSuite" 200: VDB Copy model test is finished -106/426 Test #200: Test_VDB_Config_model .................................. Passed 0.05 sec +106/426 Test #200: Test_VDB_Config_model .................................. Passed 0.25 sec test 201 Start 201: Test_VDB_Config @@ -9260,7 +9279,7 @@ 201: Test timeout computed to be: 1500 201: Testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-config... 201: VDB config test is finished -107/426 Test #201: Test_VDB_Config ........................................ Passed 0.03 sec +107/426 Test #201: Test_VDB_Config ........................................ Passed 0.18 sec test 202 Start 202: Test_Vdb_dump_Check_exit_code @@ -9269,7 +9288,7 @@ 202: Test timeout computed to be: 1500 202: WARNING[TEST1] help message is in 'STDOUT' 202: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump] -108/426 Test #202: Test_Vdb_dump_Check_exit_code .......................... Passed 0.09 sec +108/426 Test #202: Test_Vdb_dump_Check_exit_code .......................... Passed 0.40 sec test 203 Start 203: Test_Vdb_dump_view-spec @@ -9300,7 +9319,7 @@ 203: NestedView (0 s) 203: 203: *** No errors detected (0 s total) -109/426 Test #203: Test_Vdb_dump_view-spec ................................ Passed 0.05 sec +109/426 Test #203: Test_Vdb_dump_view-spec ................................ Passed 0.34 sec test 206 Start 206: Test_VdbValidate_Unit @@ -9313,14 +9332,14 @@ 206: is_sorted_unsorted (0 s) 206: 206: *** No errors detected (0 s total) -110/426 Test #206: Test_VdbValidate_Unit .................................. Passed 0.01 sec +110/426 Test #206: Test_VdbValidate_Unit .................................. Passed 0.03 sec test 210 Start 210: Test_Sra_Info_Help 210: Test command: /usr/bin/sh "-c" "ls /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info>/dev/null 2>&1 && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -h >actual/Test_Sra_Info_Help.stdout || echo no sra-info" 210: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 210: Test timeout computed to be: 1500 -111/426 Test #210: Test_Sra_Info_Help ..................................... Passed 0.01 sec +111/426 Test #210: Test_Sra_Info_Help ..................................... Passed 0.06 sec test 211 Start 211: Test_Sra_Info_NoParam @@ -9329,7 +9348,7 @@ 211: Test timeout computed to be: 1500 211: running 211: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info 1>./actual//stdout 2>./actual//stderr -112/426 Test #211: Test_Sra_Info_NoParam .................................. Passed 0.04 sec +112/426 Test #211: Test_Sra_Info_NoParam .................................. Passed 0.23 sec test 212 Start 212: Test_Sra_Info_MultipleParams @@ -9338,7 +9357,7 @@ 212: Test timeout computed to be: 1500 212: running 212: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info SRR000123 SRR0001234 1>./actual//stdout 2>./actual//stderr -113/426 Test #212: Test_Sra_Info_MultipleParams ........................... Passed 0.04 sec +113/426 Test #212: Test_Sra_Info_MultipleParams ........................... Passed 0.23 sec test 213 Start 213: Test_Sra_Info_Limit_Negative @@ -9347,7 +9366,7 @@ 213: Test timeout computed to be: 1500 213: running 213: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --spot-layout DRR032985 --limit -1 1>./actual//stdout 2>./actual//stderr -114/426 Test #213: Test_Sra_Info_Limit_Negative ........................... Passed 0.04 sec +114/426 Test #213: Test_Sra_Info_Limit_Negative ........................... Passed 0.20 sec test 214 Start 214: Test_Sra_Info_Limit_Zero @@ -9356,7 +9375,7 @@ 214: Test timeout computed to be: 1500 214: running 214: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --spot-layout DRR032985 --limit 0 1>./actual//stdout 2>./actual//stderr -115/426 Test #214: Test_Sra_Info_Limit_Zero ............................... Passed 0.04 sec +115/426 Test #214: Test_Sra_Info_Limit_Zero ............................... Passed 0.29 sec test 221 Start 221: Test_Sra_Info_Platform_Format_CSV @@ -9365,7 +9384,7 @@ 221: Test timeout computed to be: 9000 221: running 4.1 221: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f csv 1>./actual/4.1/stdout 2>./actual/4.1/stderr -116/426 Test #221: Test_Sra_Info_Platform_Format_CSV ...................... Passed 0.12 sec +116/426 Test #221: Test_Sra_Info_Platform_Format_CSV ...................... Passed 0.51 sec test 222 Start 222: Test_Sra_Info_Platform_Format_XML @@ -9374,7 +9393,7 @@ 222: Test timeout computed to be: 9000 222: running 4.2 222: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f xml 1>./actual/4.2/stdout 2>./actual/4.2/stderr -117/426 Test #222: Test_Sra_Info_Platform_Format_XML ...................... Passed 0.12 sec +117/426 Test #222: Test_Sra_Info_Platform_Format_XML ...................... Passed 0.42 sec test 223 Start 223: Test_Sra_Info_Platform_Format_Json @@ -9383,7 +9402,7 @@ 223: Test timeout computed to be: 9000 223: running 4.3 223: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f json 1>./actual/4.3/stdout 2>./actual/4.3/stderr -118/426 Test #223: Test_Sra_Info_Platform_Format_Json ..................... Passed 0.12 sec +118/426 Test #223: Test_Sra_Info_Platform_Format_Json ..................... Passed 0.48 sec test 224 Start 224: Test_Sra_Info_Platform_Format_Tab @@ -9392,7 +9411,7 @@ 224: Test timeout computed to be: 9000 224: running 4.4 224: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f tab 1>./actual/4.4/stdout 2>./actual/4.4/stderr -119/426 Test #224: Test_Sra_Info_Platform_Format_Tab ...................... Passed 0.12 sec +119/426 Test #224: Test_Sra_Info_Platform_Format_Tab ...................... Passed 0.56 sec test 227 Start 227: Test_Sra_Info_Quality_Physical @@ -9401,7 +9420,7 @@ 227: Test timeout computed to be: 9000 227: running 6.1 227: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --quality ./input/MultiPlatform.sra 1>./actual/6.1/stdout 2>./actual/6.1/stderr -120/426 Test #227: Test_Sra_Info_Quality_Physical ......................... Passed 0.12 sec +120/426 Test #227: Test_Sra_Info_Quality_Physical ......................... Passed 0.68 sec test 242 Start 242: Test_Sra_Info_Schema_Default @@ -9410,7 +9429,7 @@ 242: Test timeout computed to be: 9000 242: running 9.0 242: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra 1>./actual/9.0/stdout 2>./actual/9.0/stderr -121/426 Test #242: Test_Sra_Info_Schema_Default ........................... Passed 0.10 sec +121/426 Test #242: Test_Sra_Info_Schema_Default ........................... Passed 0.42 sec test 243 Start 243: Test_Sra_Info_Schema_Json @@ -9419,7 +9438,7 @@ 243: Test timeout computed to be: 9000 243: running 9.1 243: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fjson 1>./actual/9.1/stdout 2>./actual/9.1/stderr -122/426 Test #243: Test_Sra_Info_Schema_Json .............................. Passed 0.10 sec +122/426 Test #243: Test_Sra_Info_Schema_Json .............................. Passed 0.42 sec test 244 Start 244: Test_Sra_Info_Schema_Xml @@ -9428,7 +9447,7 @@ 244: Test timeout computed to be: 9000 244: running 9.2 244: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fxml 1>./actual/9.2/stdout 2>./actual/9.2/stderr -123/426 Test #244: Test_Sra_Info_Schema_Xml ............................... Passed 0.09 sec +123/426 Test #244: Test_Sra_Info_Schema_Xml ............................... Passed 0.57 sec test 245 Start 245: Test_Sra_Info_ACPQS_Default @@ -9437,7 +9456,7 @@ 245: Test timeout computed to be: 9000 245: running 10.0 245: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS 1>./actual/10.0/stdout 2>./actual/10.0/stderr -124/426 Test #245: Test_Sra_Info_ACPQS_Default ............................ Passed 0.15 sec +124/426 Test #245: Test_Sra_Info_ACPQS_Default ............................ Passed 0.73 sec test 246 Start 246: Test_Sra_Info_ACPQS_Json @@ -9446,7 +9465,7 @@ 246: Test timeout computed to be: 9000 246: running 10.1 246: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fjson 1>./actual/10.1/stdout 2>./actual/10.1/stderr -125/426 Test #246: Test_Sra_Info_ACPQS_Json ............................... Passed 0.14 sec +125/426 Test #246: Test_Sra_Info_ACPQS_Json ............................... Passed 0.79 sec test 247 Start 247: Test_Sra_Info_ACPQS_Xml @@ -9455,7 +9474,7 @@ 247: Test timeout computed to be: 9000 247: running 10.2 247: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fxml 1>./actual/10.2/stdout 2>./actual/10.2/stderr -126/426 Test #247: Test_Sra_Info_ACPQS_Xml ................................ Passed 0.14 sec +126/426 Test #247: Test_Sra_Info_ACPQS_Xml ................................ Passed 0.55 sec test 257 Start 257: BamTestSetup @@ -9463,21 +9482,21 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-bamfload"' > tmp.kfg" 257: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 257: Test timeout computed to be: 1500 -127/426 Test #257: BamTestSetup ........................................... Passed 0.00 sec +127/426 Test #257: BamTestSetup ........................................... Passed 0.01 sec test 258 Start 258: Test_BamLoader_1 258: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra test.sam" 258: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 258: Test timeout computed to be: 1500 -128/426 Test #258: Test_BamLoader_1 ....................................... Passed 0.25 sec +128/426 Test #258: Test_BamLoader_1 ....................................... Passed 1.01 sec test 259 Start 259: Test_BamLoader_MinBatchSize 259: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra --min-batch-size 999999 test.sam" 259: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 259: Test timeout computed to be: 1500 -129/426 Test #259: Test_BamLoader_MinBatchSize ............................ Passed 0.31 sec +129/426 Test #259: Test_BamLoader_MinBatchSize ............................ Passed 0.98 sec test 260 Start 260: Test_BamLoader_MinBatchSize_Bad @@ -9497,8 +9516,8 @@ 260: 260: Use option --help for more information. 260: -260: 2026-05-20T15:14:47 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -130/426 Test #260: Test_BamLoader_MinBatchSize_Bad ........................ Passed 0.04 sec +260: 2025-04-17T09:17:25 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +130/426 Test #260: Test_BamLoader_MinBatchSize_Bad ........................ Passed 0.18 sec test 261 Start 261: Test_BamLoader_FewerThan3Threads @@ -9518,8 +9537,8 @@ 261: 261: Use option --help for more information. 261: -261: 2026-05-20T15:14:47 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -131/426 Test #261: Test_BamLoader_FewerThan3Threads ....................... Passed 0.03 sec +261: 2025-04-17T09:17:25 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +131/426 Test #261: Test_BamLoader_FewerThan3Threads ....................... Passed 0.12 sec test 262 Start 262: Test_BamLoader_ThreadsBad @@ -9539,15 +9558,15 @@ 262: 262: Use option --help for more information. 262: -262: 2026-05-20T15:14:47 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -132/426 Test #262: Test_BamLoader_ThreadsBad .............................. Passed 0.03 sec +262: 2025-04-17T09:17:25 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +132/426 Test #262: Test_BamLoader_ThreadsBad .............................. Passed 0.16 sec test 263 Start 263: Test_BamLoader_platform 263: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_BamLoader_platform 263: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 263: Test timeout computed to be: 1500 -133/426 Test #263: Test_BamLoader_platform ................................ Passed 0.00 sec +133/426 Test #263: Test_BamLoader_platform ................................ Passed 0.02 sec test 264 Start 264: LatfTestSetup @@ -9555,7 +9574,7 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-latfload"' > tmp.kfg" 264: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 264: Test timeout computed to be: 1500 -134/426 Test #264: LatfTestSetup .......................................... Passed 0.00 sec +134/426 Test #264: LatfTestSetup .......................................... Passed 0.02 sec test 265 Start 265: SlowTest_FastqLoader_id2name @@ -9577,7 +9596,7 @@ 265: AddRealloc (0 s) 265: 265: *** No errors detected (0 s total) -135/426 Test #265: SlowTest_FastqLoader_id2name ........................... Passed 0.01 sec +135/426 Test #265: SlowTest_FastqLoader_id2name ........................... Passed 0.04 sec test 266 Start 266: Test_FastqLoader_WbFastq_dflt @@ -9689,8 +9708,8 @@ 266: FastqMultiLineSequenceFasta (0 s) 266: FastqMultiLineSequenceFastq (0 s) 266: -266: *** No errors detected (0 s total) -136/426 Test #266: Test_FastqLoader_WbFastq_dflt .......................... Passed 0.09 sec +266: *** No errors detected (1 s total) +136/426 Test #266: Test_FastqLoader_WbFastq_dflt .......................... Passed 1.27 sec test 267 Start 267: Test_FastqLoader_WbFastqParse @@ -9729,18 +9748,18 @@ 268: Test timeout computed to be: 1500 268: Running 14 test cases... 268: CommonWriterOneFile (0 s) -268: 2026-05-20T15:14:47 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +268: 2025-04-17T09:17:27 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_Error (0 s) -268: 2026-05-20T15:14:47 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id +268: 2025-04-17T09:17:27 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id 268: CommonWriterDuplicateReadnames_Allowed (0 s) -268: 2026-05-20T15:14:47 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +268: 2025-04-17T09:17:28 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_SameFragment (0 s) 268: CommonWriterDuplicateReadnames_DiffFragment (0 s) -268: 2026-05-20T15:14:48 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info -268: 2026-05-20T15:14:48 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +268: 2025-04-17T09:17:28 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info +268: 2025-04-17T09:17:28 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_MatedThenUnmated (0 s) -268: 2026-05-20T15:14:48 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info -268: 2026-05-20T15:14:48 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +268: 2025-04-17T09:17:29 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info +268: 2025-04-17T09:17:29 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_UnmatedThenMated (0 s) 268: NoSpotAssemply (0 s) 268: NoSpotAssemply_case2 (0 s) @@ -9750,8 +9769,8 @@ 268: Interleaved_1_longer (0 s) 268: Interleaved_2_longer (0 s) 268: -268: *** No errors detected (1 s total) -138/426 Test #268: Test_FastqLoader_WbFastqLoader ......................... Passed 1.52 sec +268: *** No errors detected (6 s total) +138/426 Test #268: Test_FastqLoader_WbFastqLoader ......................... Passed 6.12 sec test 269 Start 269: Test_FastqLoader_1.1 @@ -9760,7 +9779,7 @@ 269: Test timeout computed to be: 1500 269: running 1.1 269: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.1.fastq --quality PHRED_33 -o ./actual/1.1/obj 1>./actual/1.1/load.stdout 2>./actual/1.1/load.stderr -139/426 Test #269: Test_FastqLoader_1.1 ................................... Passed 0.34 sec +139/426 Test #269: Test_FastqLoader_1.1 ................................... Passed 1.34 sec test 270 Start 270: Test_FastqLoader_1.2 @@ -9769,7 +9788,7 @@ 270: Test timeout computed to be: 1500 270: running 1.2 270: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.2.fastq --quality PHRED_64 -o ./actual/1.2/obj 1>./actual/1.2/load.stdout 2>./actual/1.2/load.stderr -140/426 Test #270: Test_FastqLoader_1.2 ................................... Passed 0.32 sec +140/426 Test #270: Test_FastqLoader_1.2 ................................... Passed 1.49 sec test 271 Start 271: Test_FastqLoader_1.3 @@ -9778,7 +9797,7 @@ 271: Test timeout computed to be: 1500 271: running 1.3 271: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.3.fastq --quality PHRED_33 -o ./actual/1.3/obj 1>./actual/1.3/load.stdout 2>./actual/1.3/load.stderr -141/426 Test #271: Test_FastqLoader_1.3 ................................... Passed 0.15 sec +141/426 Test #271: Test_FastqLoader_1.3 ................................... Passed 0.58 sec test 272 Start 272: Test_FastqLoader_1.4 @@ -9787,7 +9806,7 @@ 272: Test timeout computed to be: 1500 272: running 1.4 272: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.4.fastq --quality LOGODDS -o ./actual/1.4/obj 1>./actual/1.4/load.stdout 2>./actual/1.4/load.stderr -142/426 Test #272: Test_FastqLoader_1.4 ................................... Passed 0.33 sec +142/426 Test #272: Test_FastqLoader_1.4 ................................... Passed 1.39 sec test 273 Start 273: Test_FastqLoader_2.1 @@ -9796,7 +9815,7 @@ 273: Test timeout computed to be: 1500 273: running 2.1 273: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.1.fastq --quality PHRED_33 -o ./actual/2.1/obj 1>./actual/2.1/load.stdout 2>./actual/2.1/load.stderr -143/426 Test #273: Test_FastqLoader_2.1 ................................... Passed 0.29 sec +143/426 Test #273: Test_FastqLoader_2.1 ................................... Passed 1.18 sec test 274 Start 274: Test_FastqLoader_2.5 @@ -9805,7 +9824,7 @@ 274: Test timeout computed to be: 1500 274: running 2.5 274: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.5.fastq --quality PHRED_33 -o ./actual/2.5/obj 1>./actual/2.5/load.stdout 2>./actual/2.5/load.stderr -144/426 Test #274: Test_FastqLoader_2.5 ................................... Passed 0.29 sec +144/426 Test #274: Test_FastqLoader_2.5 ................................... Passed 1.47 sec test 275 Start 275: Test_FastqLoader_2.6 @@ -9814,7 +9833,7 @@ 275: Test timeout computed to be: 1500 275: running 2.6 275: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.6.fastq --quality PHRED_33 -o ./actual/2.6/obj 1>./actual/2.6/load.stdout 2>./actual/2.6/load.stderr -145/426 Test #275: Test_FastqLoader_2.6 ................................... Passed 0.29 sec +145/426 Test #275: Test_FastqLoader_2.6 ................................... Passed 1.03 sec test 276 Start 276: Test_FastqLoader_2.7 @@ -9823,7 +9842,7 @@ 276: Test timeout computed to be: 1500 276: running 2.7 276: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.7.fastq --quality PHRED_33 -o ./actual/2.7/obj 1>./actual/2.7/load.stdout 2>./actual/2.7/load.stderr -146/426 Test #276: Test_FastqLoader_2.7 ................................... Passed 0.19 sec +146/426 Test #276: Test_FastqLoader_2.7 ................................... Passed 0.83 sec test 277 Start 277: Test_FastqLoader_2.7.1 @@ -9832,7 +9851,7 @@ 277: Test timeout computed to be: 1500 277: running 2.7.1 277: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/2.7.fastq --quality PHRED_33 --allow_duplicates -o ./actual/2.7.1/obj 1>./actual/2.7.1/load.stdout 2>./actual/2.7.1/load.stderr -147/426 Test #277: Test_FastqLoader_2.7.1 ................................. Passed 0.30 sec +147/426 Test #277: Test_FastqLoader_2.7.1 ................................. Passed 1.53 sec test 278 Start 278: Test_FastqLoader_2.8.1 @@ -9841,7 +9860,7 @@ 278: Test timeout computed to be: 1500 278: running 2.8.1 278: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.8.1.fastq --quality PHRED_33 -o ./actual/2.8.1/obj 1>./actual/2.8.1/load.stdout 2>./actual/2.8.1/load.stderr -148/426 Test #278: Test_FastqLoader_2.8.1 ................................. Passed 0.30 sec +148/426 Test #278: Test_FastqLoader_2.8.1 ................................. Passed 1.17 sec test 279 Start 279: Test_FastqLoader_2.9 @@ -9850,7 +9869,7 @@ 279: Test timeout computed to be: 1500 279: running 2.9 279: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.fastq --quality PHRED_33 -o ./actual/2.9/obj 1>./actual/2.9/load.stdout 2>./actual/2.9/load.stderr -149/426 Test #279: Test_FastqLoader_2.9 ................................... Passed 0.14 sec +149/426 Test #279: Test_FastqLoader_2.9 ................................... Passed 0.79 sec test 280 Start 280: Test_FastqLoader_2.9.1 @@ -9859,7 +9878,7 @@ 280: Test timeout computed to be: 1500 280: running 2.9.1 280: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.1.fastq --quality PHRED_33 -o ./actual/2.9.1/obj 1>./actual/2.9.1/load.stdout 2>./actual/2.9.1/load.stderr -150/426 Test #280: Test_FastqLoader_2.9.1 ................................. Passed 0.16 sec +150/426 Test #280: Test_FastqLoader_2.9.1 ................................. Passed 0.75 sec test 281 Start 281: Test_FastqLoader_3.1 @@ -9868,15 +9887,15 @@ 281: Test timeout computed to be: 1500 281: running 3.1 281: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/3.1a.fastq input/3.1b.fastq --quality PHRED_33 -o ./actual/3.1/obj 1>./actual/3.1/load.stdout 2>./actual/3.1/load.stderr -151/426 Test #281: Test_FastqLoader_3.1 ................................... Passed 0.31 sec +151/426 Test #281: Test_FastqLoader_3.1 ................................... Passed 1.62 sec test 282 Start 282: Test_FastqLoader_4.1 282: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load ./input/4.fastq --tmpfs ./actual -v -o actual/4.1.obj --quality PHRED_33 2>&1 | grep "Path for scratch files: ./actual/key2id"" 282: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 282: Test timeout computed to be: 1500 -282: 2026-05-20T15:14:52 latf-load.3.2.1: Path for scratch files: ./actual/key2id.3347990.1 -152/426 Test #282: Test_FastqLoader_4.1 ................................... Passed 0.16 sec +282: 2025-04-17T09:17:48 latf-load.3.2.1: Path for scratch files: ./actual/key2id.1840646.1 +152/426 Test #282: Test_FastqLoader_4.1 ................................... Passed 0.87 sec test 283 Start 283: Test_FastqLoader_4.2 @@ -9885,7 +9904,7 @@ 283: Test timeout computed to be: 1500 283: running 4.2 283: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --qual-quant 1:10,10:20,20:30,30:- --quality PHRED_33 -o ./actual/4.2/obj 1>./actual/4.2/load.stdout 2>./actual/4.2/load.stderr -153/426 Test #283: Test_FastqLoader_4.2 ................................... Passed 0.31 sec +153/426 Test #283: Test_FastqLoader_4.2 ................................... Passed 1.29 sec test 284 Start 284: Test_FastqLoader_4.3.1 @@ -9894,7 +9913,7 @@ 284: Test timeout computed to be: 1500 284: running 4.3.1 284: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --cache-size BIG --quality PHRED_33 -o ./actual/4.3.1/obj 1>./actual/4.3.1/load.stdout 2>./actual/4.3.1/load.stderr -154/426 Test #284: Test_FastqLoader_4.3.1 ................................. Passed 0.05 sec +154/426 Test #284: Test_FastqLoader_4.3.1 ................................. Passed 0.32 sec test 285 Start 285: Test_FastqLoader_4.5 @@ -9903,7 +9922,7 @@ 285: Test timeout computed to be: 1500 285: running 4.5 285: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.fastq --max-err-count 2 --quality PHRED_33 -o ./actual/4.5/obj 1>./actual/4.5/load.stdout 2>./actual/4.5/load.stderr -155/426 Test #285: Test_FastqLoader_4.5 ................................... Passed 0.16 sec +155/426 Test #285: Test_FastqLoader_4.5 ................................... Passed 0.79 sec test 286 Start 286: Test_FastqLoader_4.5.2 @@ -9912,7 +9931,7 @@ 286: Test timeout computed to be: 1500 286: running 4.5.2 286: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.2.fastq --platform ILLUMINA --quality PHRED_33 --max-err-count 2 -o ./actual/4.5.2/obj 1>./actual/4.5.2/load.stdout 2>./actual/4.5.2/load.stderr -156/426 Test #286: Test_FastqLoader_4.5.2 ................................. Passed 0.17 sec +156/426 Test #286: Test_FastqLoader_4.5.2 ................................. Passed 0.81 sec test 287 Start 287: Test_FastqLoader_4.6 @@ -9921,7 +9940,7 @@ 287: Test timeout computed to be: 1500 287: running 4.6 287: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p LS454 --quality PHRED_33 -o ./actual/4.6/obj 1>./actual/4.6/load.stdout 2>./actual/4.6/load.stderr -157/426 Test #287: Test_FastqLoader_4.6 ................................... Passed 0.30 sec +157/426 Test #287: Test_FastqLoader_4.6 ................................... Passed 1.31 sec test 288 Start 288: Test_FastqLoader_4.6.1 @@ -9930,7 +9949,7 @@ 288: Test timeout computed to be: 1500 288: running 4.6.1 288: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p SOMETHINGELSE --quality PHRED_33 -o ./actual/4.6.1/obj 1>./actual/4.6.1/load.stdout 2>./actual/4.6.1/load.stderr -158/426 Test #288: Test_FastqLoader_4.6.1 ................................. Passed 0.04 sec +158/426 Test #288: Test_FastqLoader_4.6.1 ................................. Passed 0.27 sec test 289 Start 289: Test_FastqLoader_4.7 @@ -9939,7 +9958,7 @@ 289: Test timeout computed to be: 1500 289: running 4.7 289: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/not_there --quality PHRED_33 -o ./actual/4.7/obj 1>./actual/4.7/load.stdout 2>./actual/4.7/load.stderr -159/426 Test #289: Test_FastqLoader_4.7 ................................... Passed 0.15 sec +159/426 Test #289: Test_FastqLoader_4.7 ................................... Passed 0.80 sec test 290 Start 290: Test_FastqLoader_4.8 @@ -9948,7 +9967,7 @@ 290: Test timeout computed to be: 1500 290: running 4.8 290: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.8.fastq --quality PHRED_33 --no-readnames -o ./actual/4.8/obj 1>./actual/4.8/load.stdout 2>./actual/4.8/load.stderr -160/426 Test #290: Test_FastqLoader_4.8 ................................... Passed 0.33 sec +160/426 Test #290: Test_FastqLoader_4.8 ................................... Passed 1.34 sec test 291 Start 291: Test_FastqLoader_5.0 @@ -9957,7 +9976,7 @@ 291: Test timeout computed to be: 1500 291: running 5.0 291: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/5.0.fastq.gz --quality PHRED_33 -o ./actual/5.0/obj 1>./actual/5.0/load.stdout 2>./actual/5.0/load.stderr -161/426 Test #291: Test_FastqLoader_5.0 ................................... Passed 0.30 sec +161/426 Test #291: Test_FastqLoader_5.0 ................................... Passed 1.36 sec test 292 Start 292: Test_FastqLoader_6.0 @@ -9966,7 +9985,7 @@ 292: Test timeout computed to be: 1500 292: running 6.0 292: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/6.0.fastq --quality PHRED_33 -o ./actual/6.0/obj 1>./actual/6.0/load.stdout 2>./actual/6.0/load.stderr -162/426 Test #292: Test_FastqLoader_6.0 ................................... Passed 0.31 sec +162/426 Test #292: Test_FastqLoader_6.0 ................................... Passed 1.94 sec test 293 Start 293: Test_FastqLoader_7.1 @@ -9975,7 +9994,7 @@ 293: Test timeout computed to be: 1500 293: running 7.1 293: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.1.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.1/obj 1>./actual/7.1/load.stdout 2>./actual/7.1/load.stderr -163/426 Test #293: Test_FastqLoader_7.1 ................................... Passed 0.30 sec +163/426 Test #293: Test_FastqLoader_7.1 ................................... Passed 0.97 sec test 294 Start 294: Test_FastqLoader_7.2 @@ -9984,7 +10003,7 @@ 294: Test timeout computed to be: 1500 294: running 7.2 294: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.2.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.2/obj 1>./actual/7.2/load.stdout 2>./actual/7.2/load.stderr -164/426 Test #294: Test_FastqLoader_7.2 ................................... Passed 0.30 sec +164/426 Test #294: Test_FastqLoader_7.2 ................................... Passed 0.73 sec test 295 Start 295: Test_FastqLoader_7.3 @@ -9993,7 +10012,7 @@ 295: Test timeout computed to be: 1500 295: running 7.3 295: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.3.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.3/obj 1>./actual/7.3/load.stdout 2>./actual/7.3/load.stderr -165/426 Test #295: Test_FastqLoader_7.3 ................................... Passed 0.40 sec +165/426 Test #295: Test_FastqLoader_7.3 ................................... Passed 0.73 sec test 296 Start 296: Test_FastqLoader_8.0 @@ -10002,7 +10021,7 @@ 296: Test timeout computed to be: 1500 296: running 8.0 296: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.0.fastq --quality PHRED_33 -o ./actual/8.0/obj 1>./actual/8.0/load.stdout 2>./actual/8.0/load.stderr -166/426 Test #296: Test_FastqLoader_8.0 ................................... Passed 0.32 sec +166/426 Test #296: Test_FastqLoader_8.0 ................................... Passed 0.77 sec test 297 Start 297: Test_FastqLoader_8.1 @@ -10011,7 +10030,7 @@ 297: Test timeout computed to be: 1500 297: running 8.1 297: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.1.fastq --quality PHRED_33 -o ./actual/8.1/obj 1>./actual/8.1/load.stdout 2>./actual/8.1/load.stderr -167/426 Test #297: Test_FastqLoader_8.1 ................................... Passed 0.37 sec +167/426 Test #297: Test_FastqLoader_8.1 ................................... Passed 0.63 sec test 298 Start 298: Test_FastqLoader_9.0 @@ -10020,7 +10039,7 @@ 298: Test timeout computed to be: 1500 298: running 9.0 298: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/9.0.fastq --quality PHRED_33 -o ./actual/9.0/obj 1>./actual/9.0/load.stdout 2>./actual/9.0/load.stderr -168/426 Test #298: Test_FastqLoader_9.0 ................................... Passed 0.39 sec +168/426 Test #298: Test_FastqLoader_9.0 ................................... Passed 1.16 sec test 299 Start 299: Test_FastqLoader_10.0 @@ -10029,7 +10048,7 @@ 299: Test timeout computed to be: 1500 299: running 10.0 299: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/10.0.fastq --quality PHRED_33 -o ./actual/10.0/obj 1>./actual/10.0/load.stdout 2>./actual/10.0/load.stderr -169/426 Test #299: Test_FastqLoader_10.0 .................................. Passed 0.74 sec +169/426 Test #299: Test_FastqLoader_10.0 .................................. Passed 1.23 sec test 300 Start 300: Test_FastqLoader_11.0 @@ -10038,7 +10057,7 @@ 300: Test timeout computed to be: 1500 300: running 11.0 300: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.0.1.fasta input/11.0.2.fasta --quality PHRED_33 -o ./actual/11.0/obj 1>./actual/11.0/load.stdout 2>./actual/11.0/load.stderr -170/426 Test #300: Test_FastqLoader_11.0 .................................. Passed 0.49 sec +170/426 Test #300: Test_FastqLoader_11.0 .................................. Passed 1.19 sec test 301 Start 301: Test_FastqLoader_11.1 @@ -10047,7 +10066,7 @@ 301: Test timeout computed to be: 1500 301: running 11.1 301: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.1.1.fastq input/11.1.2.fastq --quality PHRED_33 -o ./actual/11.1/obj 1>./actual/11.1/load.stdout 2>./actual/11.1/load.stderr -171/426 Test #301: Test_FastqLoader_11.1 .................................. Passed 0.65 sec +171/426 Test #301: Test_FastqLoader_11.1 .................................. Passed 1.07 sec test 302 Start 302: Test_FastqLoader_12.0 @@ -10056,7 +10075,7 @@ 302: Test timeout computed to be: 1500 302: running 12.0 302: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.0.fastq --quality PHRED_33 --ignore-illumina-tags -o ./actual/12.0/obj 1>./actual/12.0/load.stdout 2>./actual/12.0/load.stderr -172/426 Test #302: Test_FastqLoader_12.0 .................................. Passed 0.77 sec +172/426 Test #302: Test_FastqLoader_12.0 .................................. Passed 1.06 sec test 303 Start 303: Test_FastqLoader_12.1 @@ -10065,7 +10084,7 @@ 303: Test timeout computed to be: 1500 303: running 12.1 303: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.1.fastq --quality PHRED_33 -o ./actual/12.1/obj 1>./actual/12.1/load.stdout 2>./actual/12.1/load.stderr -173/426 Test #303: Test_FastqLoader_12.1 .................................. Passed 0.75 sec +173/426 Test #303: Test_FastqLoader_12.1 .................................. Passed 1.18 sec test 304 Start 304: Test_FastqLoader_12.2 @@ -10074,7 +10093,7 @@ 304: Test timeout computed to be: 1500 304: running 12.2 304: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.2.fastq --quality PHRED_33 -o ./actual/12.2/obj 1>./actual/12.2/load.stdout 2>./actual/12.2/load.stderr -174/426 Test #304: Test_FastqLoader_12.2 .................................. Passed 0.50 sec +174/426 Test #304: Test_FastqLoader_12.2 .................................. Passed 1.01 sec test 305 Start 305: Test_FastqLoader_13.0 @@ -10083,7 +10102,7 @@ 305: Test timeout computed to be: 1500 305: running 13.0 305: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.0.fastq --quality PHRED_33 -o ./actual/13.0/obj 1>./actual/13.0/load.stdout 2>./actual/13.0/load.stderr -175/426 Test #305: Test_FastqLoader_13.0 .................................. Passed 0.78 sec +175/426 Test #305: Test_FastqLoader_13.0 .................................. Passed 1.16 sec test 306 Start 306: Test_FastqLoader_13.1 @@ -10092,7 +10111,7 @@ 306: Test timeout computed to be: 1500 306: running 13.1 306: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.1.fastq --quality PHRED_33 -o ./actual/13.1/obj 1>./actual/13.1/load.stdout 2>./actual/13.1/load.stderr -176/426 Test #306: Test_FastqLoader_13.1 .................................. Passed 0.58 sec +176/426 Test #306: Test_FastqLoader_13.1 .................................. Passed 1.37 sec test 307 Start 307: Test_FastqLoader_14.0 @@ -10101,7 +10120,7 @@ 307: Test timeout computed to be: 1500 307: running 14.0 307: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/14.0.fasta --quality PHRED_33 -o ./actual/14.0/obj 1>./actual/14.0/load.stdout 2>./actual/14.0/load.stderr -177/426 Test #307: Test_FastqLoader_14.0 .................................. Passed 0.48 sec +177/426 Test #307: Test_FastqLoader_14.0 .................................. Passed 1.10 sec test 308 Start 308: Test_FastqLoader_15.0 @@ -10110,7 +10129,7 @@ 308: Test timeout computed to be: 1500 308: running 15.0 308: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load ./input/15.0.fastq --quality PHRED_33 -o ./actual/15.0/obj 1>./actual/15.0/load.stdout 2>./actual/15.0/load.stderr -178/426 Test #308: Test_FastqLoader_15.0 .................................. Passed 0.82 sec +178/426 Test #308: Test_FastqLoader_15.0 .................................. Passed 1.32 sec test 309 Start 309: Test_FastqLoader_16.0 @@ -10119,7 +10138,7 @@ 309: Test timeout computed to be: 1500 309: running 16.0 309: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.0.fasta --quality PHRED_33 --platform=PACBIO -o ./actual/16.0/obj 1>./actual/16.0/load.stdout 2>./actual/16.0/load.stderr -179/426 Test #309: Test_FastqLoader_16.0 .................................. Passed 0.54 sec +179/426 Test #309: Test_FastqLoader_16.0 .................................. Passed 1.38 sec test 310 Start 310: Test_FastqLoader_16.1 @@ -10128,7 +10147,7 @@ 310: Test timeout computed to be: 1500 310: running 16.1 310: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.1.fastq --quality PHRED_33 --platform=PACBIO -o ./actual/16.1/obj 1>./actual/16.1/load.stdout 2>./actual/16.1/load.stderr -180/426 Test #310: Test_FastqLoader_16.1 .................................. Passed 0.57 sec +180/426 Test #310: Test_FastqLoader_16.1 .................................. Passed 1.19 sec test 311 Start 311: Test_FastqLoader_17.0 @@ -10137,7 +10156,7 @@ 311: Test timeout computed to be: 1500 311: running 17.0 311: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/17.0.fastq --quality PHRED_33 -o ./actual/17.0/obj 1>./actual/17.0/load.stdout 2>./actual/17.0/load.stderr -181/426 Test #311: Test_FastqLoader_17.0 .................................. Passed 0.26 sec +181/426 Test #311: Test_FastqLoader_17.0 .................................. Passed 0.67 sec test 312 Start 312: Test_FastqLoader_18.0 @@ -10146,7 +10165,7 @@ 312: Test timeout computed to be: 1500 312: running 18.0 312: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/18.0.fastq --quality PHRED_33 -o ./actual/18.0/obj 1>./actual/18.0/load.stdout 2>./actual/18.0/load.stderr -182/426 Test #312: Test_FastqLoader_18.0 .................................. Passed 0.32 sec +182/426 Test #312: Test_FastqLoader_18.0 .................................. Passed 0.60 sec test 314 Start 314: Test_KAPP_qfile @@ -10172,7 +10191,7 @@ 315: KLoaderFile_noEolBeforeEof (0 s) 315: 315: *** No errors detected (7 s total) -184/426 Test #315: Test_LOADERFILE ........................................ Passed 7.08 sec +184/426 Test #315: Test_LOADERFILE ........................................ Passed 7.10 sec test 316 Start 316: Test_LOADER @@ -10184,7 +10203,7 @@ 316: LoaderMeta_WriteWithVersion (0 s) 316: 316: *** No errors detected (0 s total) -185/426 Test #316: Test_LOADER ............................................ Passed 0.08 sec +185/426 Test #316: Test_LOADER ............................................ Passed 0.14 sec test 317 Start 317: Test_regexpr @@ -10198,7 +10217,7 @@ 317: YesMatch (0 s) 317: 317: *** No errors detected (0 s total) -186/426 Test #317: Test_regexpr ........................................... Passed 0.03 sec +186/426 Test #317: Test_regexpr ........................................... Passed 0.04 sec test 318 Start 318: Test_sharq_reader @@ -10284,11 +10303,11 @@ 318: Quality33Adjusteed (0 s) 318: Quality64TooLow (0 s) 318: Quality64Adjusted (0 s) -318: [2026-05-20 03:15:12.595] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length +318: [2025-04-17 23:18:27.612] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: TextQualityTruncated (0 s) 318: TextQualityAccepted (0 s) 318: TextQualityAdjusted (0 s) -318: [2026-05-20 03:15:12.600] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length +318: [2025-04-17 23:18:27.638] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: QualityTooLongTruncated (0 s) 318: Aviti (0 s) 318: Nanopore1_readno_early (0 s) @@ -10393,8 +10412,8 @@ 318: illuminaOldBcRnOnly (0 s) 318: illuminaOldBcOnly (0 s) 318: -318: *** No errors detected (0 s total) -187/426 Test #318: Test_sharq_reader ...................................... Passed 0.49 sec +318: *** No errors detected (1 s total) +187/426 Test #318: Test_sharq_reader ...................................... Passed 1.26 sec test 319 Start 319: Test_sharq_parser @@ -10402,12 +10421,12 @@ 319: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 319: Test timeout computed to be: 1500 319: Running 1 test case... -319: [2026-05-20 03:15:12.805] [info] Parsing from 2 files -319: [2026-05-20 03:15:13.024] [parser_logger] [info] spots: 0, reads: 0 +319: [2025-04-17 23:18:28.276] [info] Parsing from 2 files +319: [2025-04-17 23:18:28.501] [parser_logger] [info] spots: 0, reads: 0 319: TestSequence (0 s) 319: 319: *** No errors detected (0 s total) -188/426 Test #319: Test_sharq_parser ...................................... Passed 0.34 sec +188/426 Test #319: Test_sharq_parser ...................................... Passed 0.27 sec test 320 Start 320: Test_sharq_writer @@ -10425,7 +10444,7 @@ 320: Fingerprinting (0 s) 320: 320: *** No errors detected (0 s total) -189/426 Test #320: Test_sharq_writer ...................................... Passed 0.01 sec +189/426 Test #320: Test_sharq_writer ...................................... Passed 0.02 sec test 321 Start 321: Test_001.read.supported @@ -10434,7 +10453,7 @@ 321: Test timeout computed to be: 1500 321: running 001.read.supported 321: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/001.R1.fastq 1>./actual/001.read.supported/load.stdout 2>./actual/001.read.supported/load.stderr -190/426 Test #321: Test_001.read.supported ................................ Passed 0.28 sec +190/426 Test #321: Test_001.read.supported ................................ Passed 0.40 sec test 322 Start 322: Test_001.read.supported-sa-hot @@ -10443,7 +10462,7 @@ 322: Test timeout computed to be: 1500 322: running 001.read.supported-sa-hot 322: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/001.R1.fastq 1>./actual/001.read.supported-sa-hot/load.stdout 2>./actual/001.read.supported-sa-hot/load.stderr -191/426 Test #322: Test_001.read.supported-sa-hot ......................... Passed 0.45 sec +191/426 Test #322: Test_001.read.supported-sa-hot ......................... Passed 0.46 sec test 323 Start 323: Test_001.read.supported-sa-cold @@ -10452,7 +10471,7 @@ 323: Test timeout computed to be: 1500 323: running 001.read.supported-sa-cold 323: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/001.R1.fastq 1>./actual/001.read.supported-sa-cold/load.stdout 2>./actual/001.read.supported-sa-cold/load.stderr -192/426 Test #323: Test_001.read.supported-sa-cold ........................ Passed 0.46 sec +192/426 Test #323: Test_001.read.supported-sa-cold ........................ Passed 0.59 sec test 324 Start 324: Test_001.read.unsupported @@ -10461,7 +10480,7 @@ 324: Test timeout computed to be: 1500 324: running 001.read.unsupported 324: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported/load.stdout 2>./actual/001.read.unsupported/load.stderr -193/426 Test #324: Test_001.read.unsupported .............................. Passed 0.14 sec +193/426 Test #324: Test_001.read.unsupported .............................. Passed 0.15 sec test 325 Start 325: Test_001.read.unsupported-sa-hot @@ -10470,7 +10489,7 @@ 325: Test timeout computed to be: 1500 325: running 001.read.unsupported-sa-hot 325: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-hot/load.stdout 2>./actual/001.read.unsupported-sa-hot/load.stderr -194/426 Test #325: Test_001.read.unsupported-sa-hot ....................... Passed 0.14 sec +194/426 Test #325: Test_001.read.unsupported-sa-hot ....................... Passed 0.17 sec test 326 Start 326: Test_001.read.unsupported-sa-cold @@ -10479,7 +10498,7 @@ 326: Test timeout computed to be: 1500 326: running 001.read.unsupported-sa-cold 326: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-cold/load.stdout 2>./actual/001.read.unsupported-sa-cold/load.stderr -195/426 Test #326: Test_001.read.unsupported-sa-cold ...................... Passed 0.14 sec +195/426 Test #326: Test_001.read.unsupported-sa-cold ...................... Passed 0.18 sec test 327 Start 327: Test_001.read.no_sequence @@ -10488,7 +10507,7 @@ 327: Test timeout computed to be: 1500 327: running 001.read.no_sequence 327: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence/load.stdout 2>./actual/001.read.no_sequence/load.stderr -196/426 Test #327: Test_001.read.no_sequence .............................. Passed 0.05 sec +196/426 Test #327: Test_001.read.no_sequence .............................. Passed 0.18 sec test 328 Start 328: Test_001.read.no_sequence-sa-hot @@ -10497,7 +10516,7 @@ 328: Test timeout computed to be: 1500 328: running 001.read.no_sequence-sa-hot 328: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-hot/load.stdout 2>./actual/001.read.no_sequence-sa-hot/load.stderr -197/426 Test #328: Test_001.read.no_sequence-sa-hot ....................... Passed 0.06 sec +197/426 Test #328: Test_001.read.no_sequence-sa-hot ....................... Passed 0.19 sec test 329 Start 329: Test_001.read.no_sequence-sa-cold @@ -10506,7 +10525,7 @@ 329: Test timeout computed to be: 1500 329: running 001.read.no_sequence-sa-cold 329: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-cold/load.stdout 2>./actual/001.read.no_sequence-sa-cold/load.stderr -198/426 Test #329: Test_001.read.no_sequence-sa-cold ...................... Passed 0.11 sec +198/426 Test #329: Test_001.read.no_sequence-sa-cold ...................... Passed 0.20 sec test 330 Start 330: Test_001.read.invalid_sequence @@ -10515,7 +10534,7 @@ 330: Test timeout computed to be: 1500 330: running 001.read.invalid_sequence 330: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence/load.stdout 2>./actual/001.read.invalid_sequence/load.stderr -199/426 Test #330: Test_001.read.invalid_sequence ......................... Passed 0.14 sec +199/426 Test #330: Test_001.read.invalid_sequence ......................... Passed 0.15 sec test 331 Start 331: Test_001.read.invalid_sequence-sa-hot @@ -10524,7 +10543,7 @@ 331: Test timeout computed to be: 1500 331: running 001.read.invalid_sequence-sa-hot 331: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-hot/load.stdout 2>./actual/001.read.invalid_sequence-sa-hot/load.stderr -200/426 Test #331: Test_001.read.invalid_sequence-sa-hot .................. Passed 0.14 sec +200/426 Test #331: Test_001.read.invalid_sequence-sa-hot .................. Passed 0.19 sec test 332 Start 332: Test_001.read.invalid_sequence-sa-cold @@ -10533,7 +10552,7 @@ 332: Test timeout computed to be: 1500 332: running 001.read.invalid_sequence-sa-cold 332: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-cold/load.stdout 2>./actual/001.read.invalid_sequence-sa-cold/load.stderr -201/426 Test #332: Test_001.read.invalid_sequence-sa-cold ................. Passed 0.14 sec +201/426 Test #332: Test_001.read.invalid_sequence-sa-cold ................. Passed 0.16 sec test 333 Start 333: Test_001.read.no_quality @@ -10542,7 +10561,7 @@ 333: Test timeout computed to be: 1500 333: running 001.read.no_quality 333: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality/load.stdout 2>./actual/001.read.no_quality/load.stderr -202/426 Test #333: Test_001.read.no_quality ............................... Passed 0.14 sec +202/426 Test #333: Test_001.read.no_quality ............................... Passed 0.17 sec test 334 Start 334: Test_001.read.no_quality-sa-hot @@ -10551,7 +10570,7 @@ 334: Test timeout computed to be: 1500 334: running 001.read.no_quality-sa-hot 334: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-hot/load.stdout 2>./actual/001.read.no_quality-sa-hot/load.stderr -203/426 Test #334: Test_001.read.no_quality-sa-hot ........................ Passed 0.15 sec +203/426 Test #334: Test_001.read.no_quality-sa-hot ........................ Passed 0.14 sec test 335 Start 335: Test_001.read.no_quality-sa-cold @@ -10560,7 +10579,7 @@ 335: Test timeout computed to be: 1500 335: running 001.read.no_quality-sa-cold 335: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-cold/load.stdout 2>./actual/001.read.no_quality-sa-cold/load.stderr -204/426 Test #335: Test_001.read.no_quality-sa-cold ....................... Passed 0.12 sec +204/426 Test #335: Test_001.read.no_quality-sa-cold ....................... Passed 0.14 sec test 336 Start 336: Test_001.read.no_quality_2 @@ -10569,7 +10588,7 @@ 336: Test timeout computed to be: 1500 336: running 001.read.no_quality_2 336: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2/load.stdout 2>./actual/001.read.no_quality_2/load.stderr -205/426 Test #336: Test_001.read.no_quality_2 ............................. Passed 0.07 sec +205/426 Test #336: Test_001.read.no_quality_2 ............................. Passed 0.16 sec test 337 Start 337: Test_001.read.no_quality_2-sa-hot @@ -10578,7 +10597,7 @@ 337: Test timeout computed to be: 1500 337: running 001.read.no_quality_2-sa-hot 337: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2-sa-hot/load.stdout 2>./actual/001.read.no_quality_2-sa-hot/load.stderr -206/426 Test #337: Test_001.read.no_quality_2-sa-hot ...................... Passed 0.04 sec +206/426 Test #337: Test_001.read.no_quality_2-sa-hot ...................... Passed 0.15 sec test 338 Start 338: Test_001.read.no_quality_2-sa-cold @@ -10587,7 +10606,7 @@ 338: Test timeout computed to be: 1500 338: running 001.read.no_quality_2-sa-cold 338: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2-sa-cold/load.stdout 2>./actual/001.read.no_quality_2-sa-cold/load.stderr -207/426 Test #338: Test_001.read.no_quality_2-sa-cold ..................... Passed 0.02 sec +207/426 Test #338: Test_001.read.no_quality_2-sa-cold ..................... Passed 0.16 sec test 339 Start 339: Test_001.read.invalid_quality33 @@ -10596,7 +10615,7 @@ 339: Test timeout computed to be: 1500 339: running 001.read.invalid_quality33 339: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33/load.stdout 2>./actual/001.read.invalid_quality33/load.stderr -208/426 Test #339: Test_001.read.invalid_quality33 ........................ Passed 0.02 sec +208/426 Test #339: Test_001.read.invalid_quality33 ........................ Passed 0.17 sec test 340 Start 340: Test_001.read.invalid_quality33-sa-hot @@ -10605,7 +10624,7 @@ 340: Test timeout computed to be: 1500 340: running 001.read.invalid_quality33-sa-hot 340: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33-sa-hot/load.stdout 2>./actual/001.read.invalid_quality33-sa-hot/load.stderr -209/426 Test #340: Test_001.read.invalid_quality33-sa-hot ................. Passed 0.03 sec +209/426 Test #340: Test_001.read.invalid_quality33-sa-hot ................. Passed 0.16 sec test 341 Start 341: Test_001.read.invalid_quality33-sa-cold @@ -10614,7 +10633,7 @@ 341: Test timeout computed to be: 1500 341: running 001.read.invalid_quality33-sa-cold 341: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33-sa-cold/load.stdout 2>./actual/001.read.invalid_quality33-sa-cold/load.stderr -210/426 Test #341: Test_001.read.invalid_quality33-sa-cold ................ Passed 0.04 sec +210/426 Test #341: Test_001.read.invalid_quality33-sa-cold ................ Passed 0.17 sec test 342 Start 342: Test_001.read.invalid_quality64 @@ -10623,7 +10642,7 @@ 342: Test timeout computed to be: 1500 342: running 001.read.invalid_quality64 342: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64/load.stdout 2>./actual/001.read.invalid_quality64/load.stderr -211/426 Test #342: Test_001.read.invalid_quality64 ........................ Passed 0.19 sec +211/426 Test #342: Test_001.read.invalid_quality64 ........................ Passed 0.25 sec test 343 Start 343: Test_001.read.invalid_quality64-sa-hot @@ -10632,7 +10651,7 @@ 343: Test timeout computed to be: 1500 343: running 001.read.invalid_quality64-sa-hot 343: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64-sa-hot/load.stdout 2>./actual/001.read.invalid_quality64-sa-hot/load.stderr -212/426 Test #343: Test_001.read.invalid_quality64-sa-hot ................. Passed 0.13 sec +212/426 Test #343: Test_001.read.invalid_quality64-sa-hot ................. Passed 0.26 sec test 344 Start 344: Test_001.read.invalid_quality64-sa-cold @@ -10641,7 +10660,7 @@ 344: Test timeout computed to be: 1500 344: running 001.read.invalid_quality64-sa-cold 344: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64-sa-cold/load.stdout 2>./actual/001.read.invalid_quality64-sa-cold/load.stderr -213/426 Test #344: Test_001.read.invalid_quality64-sa-cold ................ Passed 0.20 sec +213/426 Test #344: Test_001.read.invalid_quality64-sa-cold ................ Passed 0.29 sec test 345 Start 345: Test_001.read.invalid_quality0 @@ -10650,7 +10669,7 @@ 345: Test timeout computed to be: 1500 345: running 001.read.invalid_quality0 345: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0/load.stdout 2>./actual/001.read.invalid_quality0/load.stderr -214/426 Test #345: Test_001.read.invalid_quality0 ......................... Passed 0.06 sec +214/426 Test #345: Test_001.read.invalid_quality0 ......................... Passed 0.19 sec test 346 Start 346: Test_001.read.invalid_quality0-sa-hot @@ -10659,7 +10678,7 @@ 346: Test timeout computed to be: 1500 346: running 001.read.invalid_quality0-sa-hot 346: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0-sa-hot/load.stdout 2>./actual/001.read.invalid_quality0-sa-hot/load.stderr -215/426 Test #346: Test_001.read.invalid_quality0-sa-hot .................. Passed 0.08 sec +215/426 Test #346: Test_001.read.invalid_quality0-sa-hot .................. Passed 0.16 sec test 347 Start 347: Test_001.read.invalid_quality0-sa-cold @@ -10668,7 +10687,7 @@ 347: Test timeout computed to be: 1500 347: running 001.read.invalid_quality0-sa-cold 347: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0-sa-cold/load.stdout 2>./actual/001.read.invalid_quality0-sa-cold/load.stderr -216/426 Test #347: Test_001.read.invalid_quality0-sa-cold ................. Passed 0.14 sec +216/426 Test #347: Test_001.read.invalid_quality0-sa-cold ................. Passed 0.16 sec test 348 Start 348: Test_001.read.long_quality @@ -10677,7 +10696,7 @@ 348: Test timeout computed to be: 1500 348: running 001.read.long_quality 348: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality/load.stdout 2>./actual/001.read.long_quality/load.stderr -217/426 Test #348: Test_001.read.long_quality ............................. Passed 0.36 sec +217/426 Test #348: Test_001.read.long_quality ............................. Passed 0.39 sec test 349 Start 349: Test_001.read.long_quality-sa-hot @@ -10686,7 +10705,7 @@ 349: Test timeout computed to be: 1500 349: running 001.read.long_quality-sa-hot 349: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-hot/load.stdout 2>./actual/001.read.long_quality-sa-hot/load.stderr -218/426 Test #349: Test_001.read.long_quality-sa-hot ...................... Passed 0.46 sec +218/426 Test #349: Test_001.read.long_quality-sa-hot ...................... Passed 0.48 sec test 350 Start 350: Test_001.read.long_quality-sa-cold @@ -10695,7 +10714,7 @@ 350: Test timeout computed to be: 1500 350: running 001.read.long_quality-sa-cold 350: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-cold/load.stdout 2>./actual/001.read.long_quality-sa-cold/load.stderr -219/426 Test #350: Test_001.read.long_quality-sa-cold ..................... Passed 0.27 sec +219/426 Test #350: Test_001.read.long_quality-sa-cold ..................... Passed 0.69 sec test 351 Start 351: Test_001.read.bad_quality0 @@ -10704,7 +10723,7 @@ 351: Test timeout computed to be: 1500 351: running 001.read.bad_quality0 351: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0/load.stdout 2>./actual/001.read.bad_quality0/load.stderr -220/426 Test #351: Test_001.read.bad_quality0 ............................. Passed 0.09 sec +220/426 Test #351: Test_001.read.bad_quality0 ............................. Passed 0.18 sec test 352 Start 352: Test_001.read.bad_quality0-sa-hot @@ -10713,7 +10732,7 @@ 352: Test timeout computed to be: 1500 352: running 001.read.bad_quality0-sa-hot 352: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-hot/load.stdout 2>./actual/001.read.bad_quality0-sa-hot/load.stderr -221/426 Test #352: Test_001.read.bad_quality0-sa-hot ...................... Passed 0.02 sec +221/426 Test #352: Test_001.read.bad_quality0-sa-hot ...................... Passed 0.15 sec test 353 Start 353: Test_001.read.bad_quality0-sa-cold @@ -10722,7 +10741,7 @@ 353: Test timeout computed to be: 1500 353: running 001.read.bad_quality0-sa-cold 353: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-cold/load.stdout 2>./actual/001.read.bad_quality0-sa-cold/load.stderr -222/426 Test #353: Test_001.read.bad_quality0-sa-cold ..................... Passed 0.04 sec +222/426 Test #353: Test_001.read.bad_quality0-sa-cold ..................... Passed 0.18 sec test 354 Start 354: Test_001.read.bad_quality33 @@ -10731,7 +10750,7 @@ 354: Test timeout computed to be: 1500 354: running 001.read.bad_quality33 354: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33/load.stdout 2>./actual/001.read.bad_quality33/load.stderr -223/426 Test #354: Test_001.read.bad_quality33 ............................ Passed 0.08 sec +223/426 Test #354: Test_001.read.bad_quality33 ............................ Passed 0.18 sec test 355 Start 355: Test_001.read.bad_quality33-sa-hot @@ -10740,7 +10759,7 @@ 355: Test timeout computed to be: 1500 355: running 001.read.bad_quality33-sa-hot 355: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-hot/load.stdout 2>./actual/001.read.bad_quality33-sa-hot/load.stderr -224/426 Test #355: Test_001.read.bad_quality33-sa-hot ..................... Passed 0.04 sec +224/426 Test #355: Test_001.read.bad_quality33-sa-hot ..................... Passed 0.16 sec test 356 Start 356: Test_001.read.bad_quality33-sa-cold @@ -10749,7 +10768,7 @@ 356: Test timeout computed to be: 1500 356: running 001.read.bad_quality33-sa-cold 356: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-cold/load.stdout 2>./actual/001.read.bad_quality33-sa-cold/load.stderr -225/426 Test #356: Test_001.read.bad_quality33-sa-cold .................... Passed 0.05 sec +225/426 Test #356: Test_001.read.bad_quality33-sa-cold .................... Passed 0.16 sec test 357 Start 357: Test_002.readTypes_default @@ -10758,7 +10777,7 @@ 357: Test timeout computed to be: 1500 357: running 002.readTypes_default 357: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default/load.stdout 2>./actual/002.readTypes_default/load.stderr -226/426 Test #357: Test_002.readTypes_default ............................. Passed 0.37 sec +226/426 Test #357: Test_002.readTypes_default ............................. Passed 0.48 sec test 358 Start 358: Test_002.readTypes_default-sa-hot @@ -10767,7 +10786,7 @@ 358: Test timeout computed to be: 1500 358: running 002.readTypes_default-sa-hot 358: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-hot/load.stdout 2>./actual/002.readTypes_default-sa-hot/load.stderr -227/426 Test #358: Test_002.readTypes_default-sa-hot ...................... Passed 0.63 sec +227/426 Test #358: Test_002.readTypes_default-sa-hot ...................... Passed 0.75 sec test 359 Start 359: Test_002.readTypes_default-sa-cold @@ -10776,7 +10795,7 @@ 359: Test timeout computed to be: 1500 359: running 002.readTypes_default-sa-cold 359: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-cold/load.stdout 2>./actual/002.readTypes_default-sa-cold/load.stderr -228/426 Test #359: Test_002.readTypes_default-sa-cold ..................... Passed 0.69 sec +228/426 Test #359: Test_002.readTypes_default-sa-cold ..................... Passed 0.70 sec test 360 Start 360: Test_002.readTypes_technical @@ -10785,7 +10804,7 @@ 360: Test timeout computed to be: 1500 360: running 002.readTypes_technical 360: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical/load.stdout 2>./actual/002.readTypes_technical/load.stderr -229/426 Test #360: Test_002.readTypes_technical ........................... Passed 0.46 sec +229/426 Test #360: Test_002.readTypes_technical ........................... Passed 0.50 sec test 361 Start 361: Test_002.readTypes_technical-sa-hot @@ -10794,7 +10813,7 @@ 361: Test timeout computed to be: 1500 361: running 002.readTypes_technical-sa-hot 361: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-hot/load.stdout 2>./actual/002.readTypes_technical-sa-hot/load.stderr -230/426 Test #361: Test_002.readTypes_technical-sa-hot .................... Passed 0.77 sec +230/426 Test #361: Test_002.readTypes_technical-sa-hot .................... Passed 0.67 sec test 362 Start 362: Test_002.readTypes_technical-sa-cold @@ -10803,7 +10822,7 @@ 362: Test timeout computed to be: 1500 362: running 002.readTypes_technical-sa-cold 362: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-cold/load.stdout 2>./actual/002.readTypes_technical-sa-cold/load.stderr -231/426 Test #362: Test_002.readTypes_technical-sa-cold ................... Passed 0.66 sec +231/426 Test #362: Test_002.readTypes_technical-sa-cold ................... Passed 0.77 sec test 363 Start 363: Test_002.readTypes_mixed @@ -10812,7 +10831,7 @@ 363: Test timeout computed to be: 1500 363: running 002.readTypes_mixed 363: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed/load.stdout 2>./actual/002.readTypes_mixed/load.stderr -232/426 Test #363: Test_002.readTypes_mixed ............................... Passed 0.41 sec +232/426 Test #363: Test_002.readTypes_mixed ............................... Passed 0.51 sec test 364 Start 364: Test_002.readTypes_mixed-sa-hot @@ -10821,7 +10840,7 @@ 364: Test timeout computed to be: 1500 364: running 002.readTypes_mixed-sa-hot 364: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-hot/load.stdout 2>./actual/002.readTypes_mixed-sa-hot/load.stderr -233/426 Test #364: Test_002.readTypes_mixed-sa-hot ........................ Passed 0.59 sec +233/426 Test #364: Test_002.readTypes_mixed-sa-hot ........................ Passed 0.86 sec test 365 Start 365: Test_002.readTypes_mixed-sa-cold @@ -10830,7 +10849,7 @@ 365: Test timeout computed to be: 1500 365: running 002.readTypes_mixed-sa-cold 365: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-cold/load.stdout 2>./actual/002.readTypes_mixed-sa-cold/load.stderr -234/426 Test #365: Test_002.readTypes_mixed-sa-cold ....................... Passed 0.82 sec +234/426 Test #365: Test_002.readTypes_mixed-sa-cold ....................... Passed 0.86 sec test 366 Start 366: Test_002.readTypes_missing @@ -10839,7 +10858,7 @@ 366: Test timeout computed to be: 1500 366: running 002.readTypes_missing 366: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing/load.stdout 2>./actual/002.readTypes_missing/load.stderr -235/426 Test #366: Test_002.readTypes_missing ............................. Passed 0.07 sec +235/426 Test #366: Test_002.readTypes_missing ............................. Passed 0.17 sec test 367 Start 367: Test_002.readTypes_missing-sa-hot @@ -10848,7 +10867,7 @@ 367: Test timeout computed to be: 1500 367: running 002.readTypes_missing-sa-hot 367: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-hot/load.stdout 2>./actual/002.readTypes_missing-sa-hot/load.stderr -236/426 Test #367: Test_002.readTypes_missing-sa-hot ...................... Passed 0.14 sec +236/426 Test #367: Test_002.readTypes_missing-sa-hot ...................... Passed 0.19 sec test 368 Start 368: Test_002.readTypes_missing-sa-cold @@ -10857,7 +10876,7 @@ 368: Test timeout computed to be: 1500 368: running 002.readTypes_missing-sa-cold 368: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-cold/load.stdout 2>./actual/002.readTypes_missing-sa-cold/load.stderr -237/426 Test #368: Test_002.readTypes_missing-sa-cold ..................... Passed 0.14 sec +237/426 Test #368: Test_002.readTypes_missing-sa-cold ..................... Passed 0.18 sec test 369 Start 369: Test_002.readTypes_mismatch @@ -10866,7 +10885,7 @@ 369: Test timeout computed to be: 1500 369: running 002.readTypes_mismatch 369: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch/load.stdout 2>./actual/002.readTypes_mismatch/load.stderr -238/426 Test #369: Test_002.readTypes_mismatch ............................ Passed 0.22 sec +238/426 Test #369: Test_002.readTypes_mismatch ............................ Passed 0.18 sec test 370 Start 370: Test_002.readTypes_mismatch-sa-hot @@ -10875,7 +10894,7 @@ 370: Test timeout computed to be: 1500 370: running 002.readTypes_mismatch-sa-hot 370: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch-sa-hot/load.stdout 2>./actual/002.readTypes_mismatch-sa-hot/load.stderr -239/426 Test #370: Test_002.readTypes_mismatch-sa-hot ..................... Passed 0.18 sec +239/426 Test #370: Test_002.readTypes_mismatch-sa-hot ..................... Passed 0.19 sec test 371 Start 371: Test_002.readTypes_mismatch-sa-cold @@ -10884,7 +10903,7 @@ 371: Test timeout computed to be: 1500 371: running 002.readTypes_mismatch-sa-cold 371: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch-sa-cold/load.stdout 2>./actual/002.readTypes_mismatch-sa-cold/load.stderr -240/426 Test #371: Test_002.readTypes_mismatch-sa-cold .................... Passed 0.12 sec +240/426 Test #371: Test_002.readTypes_mismatch-sa-cold .................... Passed 0.20 sec test 372 Start 372: Test_002.readTypes_unexpected @@ -10893,7 +10912,7 @@ 372: Test timeout computed to be: 1500 372: running 002.readTypes_unexpected 372: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected/load.stdout 2>./actual/002.readTypes_unexpected/load.stderr -241/426 Test #372: Test_002.readTypes_unexpected .......................... Passed 0.13 sec +241/426 Test #372: Test_002.readTypes_unexpected .......................... Passed 0.22 sec test 373 Start 373: Test_002.readTypes_unexpected-sa-hot @@ -10902,7 +10921,7 @@ 373: Test timeout computed to be: 1500 373: running 002.readTypes_unexpected-sa-hot 373: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected-sa-hot/load.stdout 2>./actual/002.readTypes_unexpected-sa-hot/load.stderr -242/426 Test #373: Test_002.readTypes_unexpected-sa-hot ................... Passed 0.10 sec +242/426 Test #373: Test_002.readTypes_unexpected-sa-hot ................... Passed 0.19 sec test 374 Start 374: Test_002.readTypes_unexpected-sa-cold @@ -10911,7 +10930,7 @@ 374: Test timeout computed to be: 1500 374: running 002.readTypes_unexpected-sa-cold 374: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected-sa-cold/load.stdout 2>./actual/002.readTypes_unexpected-sa-cold/load.stderr -243/426 Test #374: Test_002.readTypes_unexpected-sa-cold .................. Passed 0.18 sec +243/426 Test #374: Test_002.readTypes_unexpected-sa-cold .................. Passed 0.16 sec test 375 Start 375: Test_002.readTypes_interlaved_fail_1 @@ -10920,7 +10939,7 @@ 375: Test timeout computed to be: 1500 375: running 002.readTypes_interlaved_fail_1 375: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_1/load.stdout 2>./actual/002.readTypes_interlaved_fail_1/load.stderr -244/426 Test #375: Test_002.readTypes_interlaved_fail_1 ................... Passed 0.16 sec +244/426 Test #375: Test_002.readTypes_interlaved_fail_1 ................... Passed 0.25 sec test 376 Start 376: Test_002.readTypes_interleaved_fail_4 @@ -10929,7 +10948,7 @@ 376: Test timeout computed to be: 1500 376: running 002.readTypes_interleaved_fail_4 376: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interleaved_fail_4/load.stdout 2>./actual/002.readTypes_interleaved_fail_4/load.stderr -245/426 Test #376: Test_002.readTypes_interleaved_fail_4 .................. Passed 0.13 sec +245/426 Test #376: Test_002.readTypes_interleaved_fail_4 .................. Passed 0.21 sec test 377 Start 377: Test_002.readTypes_interlaved_fail_3-sa-hot @@ -10938,7 +10957,7 @@ 377: Test timeout computed to be: 1500 377: running 002.readTypes_interlaved_fail_3-sa-hot 377: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_3-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_fail_3-sa-hot/load.stderr -246/426 Test #377: Test_002.readTypes_interlaved_fail_3-sa-hot ............ Passed 0.59 sec +246/426 Test #377: Test_002.readTypes_interlaved_fail_3-sa-hot ............ Passed 0.69 sec test 378 Start 378: Test_002.readTypes_interlaved_fail_3-sa-cold @@ -10947,7 +10966,7 @@ 378: Test timeout computed to be: 1500 378: running 002.readTypes_interlaved_fail_3-sa-cold 378: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stderr -247/426 Test #378: Test_002.readTypes_interlaved_fail_3-sa-cold ........... Passed 0.57 sec +247/426 Test #378: Test_002.readTypes_interlaved_fail_3-sa-cold ........... Passed 0.67 sec test 379 Start 379: Test_002.readTypes_interlaved_fail_2-sa-hot @@ -10956,7 +10975,7 @@ 379: Test timeout computed to be: 1500 379: running 002.readTypes_interlaved_fail_2-sa-hot 379: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stderr -248/426 Test #379: Test_002.readTypes_interlaved_fail_2-sa-hot ............ Passed 0.59 sec +248/426 Test #379: Test_002.readTypes_interlaved_fail_2-sa-hot ............ Passed 0.65 sec test 380 Start 380: Test_002.readTypes_interlaved_fail_2-sa-cold @@ -10965,7 +10984,7 @@ 380: Test timeout computed to be: 1500 380: running 002.readTypes_interlaved_fail_2-sa-cold 380: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stderr -249/426 Test #380: Test_002.readTypes_interlaved_fail_2-sa-cold ........... Passed 0.64 sec +249/426 Test #380: Test_002.readTypes_interlaved_fail_2-sa-cold ........... Passed 0.65 sec test 381 Start 381: Test_002.readTypes_interlaved_pass @@ -10974,7 +10993,7 @@ 381: Test timeout computed to be: 1500 381: running 002.readTypes_interlaved_pass 381: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass/load.stdout 2>./actual/002.readTypes_interlaved_pass/load.stderr -250/426 Test #381: Test_002.readTypes_interlaved_pass ..................... Passed 0.45 sec +250/426 Test #381: Test_002.readTypes_interlaved_pass ..................... Passed 0.55 sec test 382 Start 382: Test_002.readTypes_interlaved_pass-sa-hot @@ -10983,7 +11002,7 @@ 382: Test timeout computed to be: 1500 382: running 002.readTypes_interlaved_pass-sa-hot 382: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_pass-sa-hot/load.stderr -251/426 Test #382: Test_002.readTypes_interlaved_pass-sa-hot .............. Passed 0.64 sec +251/426 Test #382: Test_002.readTypes_interlaved_pass-sa-hot .............. Passed 0.69 sec test 383 Start 383: Test_002.readTypes_interlaved_pass-sa-cold @@ -10992,7 +11011,7 @@ 383: Test timeout computed to be: 1500 383: running 002.readTypes_interlaved_pass-sa-cold 383: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_pass-sa-cold/load.stderr -252/426 Test #383: Test_002.readTypes_interlaved_pass-sa-cold ............. Passed 0.77 sec +252/426 Test #383: Test_002.readTypes_interlaved_pass-sa-cold ............. Passed 0.84 sec test 384 Start 384: Test_003.files_not_exists @@ -11001,7 +11020,7 @@ 384: Test timeout computed to be: 1500 384: running 003.files_not_exists 384: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp dummy1.fq 1>./actual/003.files_not_exists/load.stdout 2>./actual/003.files_not_exists/load.stderr -253/426 Test #384: Test_003.files_not_exists .............................. Passed 0.12 sec +253/426 Test #384: Test_003.files_not_exists .............................. Passed 0.17 sec test 385 Start 385: Test_003.files_not_exists-sa-hot @@ -11019,7 +11038,7 @@ 386: Test timeout computed to be: 1500 386: running 003.files_not_exists-sa-cold 386: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 dummy1.fq 1>./actual/003.files_not_exists-sa-cold/load.stdout 2>./actual/003.files_not_exists-sa-cold/load.stderr -255/426 Test #386: Test_003.files_not_exists-sa-cold ...................... Passed 0.13 sec +255/426 Test #386: Test_003.files_not_exists-sa-cold ...................... Passed 0.14 sec test 387 Start 387: Test_003.files_not_valid @@ -11028,7 +11047,7 @@ 387: Test timeout computed to be: 1500 387: running 003.files_not_valid 387: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.empty.fq 1>./actual/003.files_not_valid/load.stdout 2>./actual/003.files_not_valid/load.stderr -256/426 Test #387: Test_003.files_not_valid ............................... Passed 0.14 sec +256/426 Test #387: Test_003.files_not_valid ............................... Passed 0.16 sec test 388 Start 388: Test_003.files_not_valid-sa-hot @@ -11037,7 +11056,7 @@ 388: Test timeout computed to be: 1500 388: running 003.files_not_valid-sa-hot 388: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/003.empty.fq 1>./actual/003.files_not_valid-sa-hot/load.stdout 2>./actual/003.files_not_valid-sa-hot/load.stderr -257/426 Test #388: Test_003.files_not_valid-sa-hot ........................ Passed 0.13 sec +257/426 Test #388: Test_003.files_not_valid-sa-hot ........................ Passed 0.19 sec test 389 Start 389: Test_003.files_not_valid-sa-cold @@ -11046,7 +11065,7 @@ 389: Test timeout computed to be: 1500 389: running 003.files_not_valid-sa-cold 389: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/003.empty.fq 1>./actual/003.files_not_valid-sa-cold/load.stdout 2>./actual/003.files_not_valid-sa-cold/load.stderr -258/426 Test #389: Test_003.files_not_valid-sa-cold ....................... Passed 0.15 sec +258/426 Test #389: Test_003.files_not_valid-sa-cold ....................... Passed 0.18 sec test 390 Start 390: Test_003.files_readpairs @@ -11055,7 +11074,7 @@ 390: Test timeout computed to be: 1500 390: running 003.files_readpairs 390: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs/load.stdout 2>./actual/003.files_readpairs/load.stderr -259/426 Test #390: Test_003.files_readpairs ............................... Passed 1.50 sec +259/426 Test #390: Test_003.files_readpairs ............................... Passed 1.62 sec test 391 Start 391: Test_003.files_readpairs-sa-hot @@ -11064,7 +11083,7 @@ 391: Test timeout computed to be: 1500 391: running 003.files_readpairs-sa-hot 391: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-hot/load.stdout 2>./actual/003.files_readpairs-sa-hot/load.stderr -260/426 Test #391: Test_003.files_readpairs-sa-hot ........................ Passed 2.64 sec +260/426 Test #391: Test_003.files_readpairs-sa-hot ........................ Passed 2.56 sec test 392 Start 392: Test_003.files_readpairs-sa-cold @@ -11073,7 +11092,7 @@ 392: Test timeout computed to be: 1500 392: running 003.files_readpairs-sa-cold 392: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-cold/load.stdout 2>./actual/003.files_readpairs-sa-cold/load.stderr -261/426 Test #392: Test_003.files_readpairs-sa-cold ....................... Passed 2.72 sec +261/426 Test #392: Test_003.files_readpairs-sa-cold ....................... Passed 2.80 sec test 393 Start 393: Test_003.files_mixed @@ -11082,7 +11101,7 @@ 393: Test timeout computed to be: 1500 393: running 003.files_mixed 393: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed/load.stdout 2>./actual/003.files_mixed/load.stderr -262/426 Test #393: Test_003.files_mixed ................................... Passed 0.14 sec +262/426 Test #393: Test_003.files_mixed ................................... Passed 0.20 sec test 394 Start 394: Test_003.files_mixed-sa-hot @@ -11091,7 +11110,7 @@ 394: Test timeout computed to be: 1500 394: running 003.files_mixed-sa-hot 394: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed-sa-hot/load.stdout 2>./actual/003.files_mixed-sa-hot/load.stderr -263/426 Test #394: Test_003.files_mixed-sa-hot ............................ Passed 0.15 sec +263/426 Test #394: Test_003.files_mixed-sa-hot ............................ Passed 0.19 sec test 395 Start 395: Test_003.files_mixed-sa-cold @@ -11100,7 +11119,7 @@ 395: Test timeout computed to be: 1500 395: running 003.files_mixed-sa-cold 395: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed-sa-cold/load.stdout 2>./actual/003.files_mixed-sa-cold/load.stderr -264/426 Test #395: Test_003.files_mixed-sa-cold ........................... Passed 0.14 sec +264/426 Test #395: Test_003.files_mixed-sa-cold ........................... Passed 0.19 sec test 396 Start 396: Test_003.files_mixed_cluster @@ -11109,7 +11128,7 @@ 396: Test timeout computed to be: 1500 396: running 003.files_mixed_cluster 396: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_I1.fastq input/001.R1.fastq 1>./actual/003.files_mixed_cluster/load.stdout 2>./actual/003.files_mixed_cluster/load.stderr -265/426 Test #396: Test_003.files_mixed_cluster ........................... Passed 0.09 sec +265/426 Test #396: Test_003.files_mixed_cluster ........................... Passed 0.17 sec test 397 Start 397: Test_003.files_10x_mixed @@ -11118,7 +11137,7 @@ 397: Test timeout computed to be: 1500 397: running 003.files_10x_mixed 397: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed/load.stdout 2>./actual/003.files_10x_mixed/load.stderr -266/426 Test #397: Test_003.files_10x_mixed ............................... Passed 0.05 sec +266/426 Test #397: Test_003.files_10x_mixed ............................... Passed 0.27 sec test 398 Start 398: Test_003.files_10x_mixed-sa-hot @@ -11127,7 +11146,7 @@ 398: Test timeout computed to be: 1500 398: running 003.files_10x_mixed-sa-hot 398: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed-sa-hot/load.stdout 2>./actual/003.files_10x_mixed-sa-hot/load.stderr -267/426 Test #398: Test_003.files_10x_mixed-sa-hot ........................ Passed 0.03 sec +267/426 Test #398: Test_003.files_10x_mixed-sa-hot ........................ Passed 0.17 sec test 399 Start 399: Test_003.files_10x_mixed-sa-cold @@ -11136,7 +11155,7 @@ 399: Test timeout computed to be: 1500 399: running 003.files_10x_mixed-sa-cold 399: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed-sa-cold/load.stdout 2>./actual/003.files_10x_mixed-sa-cold/load.stderr -268/426 Test #399: Test_003.files_10x_mixed-sa-cold ....................... Passed 0.03 sec +268/426 Test #399: Test_003.files_10x_mixed-sa-cold ....................... Passed 0.20 sec test 400 Start 400: Test_003.readTypes_10x @@ -11145,7 +11164,7 @@ 400: Test timeout computed to be: 1500 400: running 003.readTypes_10x 400: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/003.readTypes_10x/load.stdout 2>./actual/003.readTypes_10x/load.stderr -269/426 Test #400: Test_003.readTypes_10x ................................. Passed 0.49 sec +269/426 Test #400: Test_003.readTypes_10x ................................. Passed 0.61 sec test 401 Start 401: Test_003.wrong_pairing @@ -11154,7 +11173,7 @@ 401: Test timeout computed to be: 1500 401: running 003.wrong_pairing 401: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing/load.stdout 2>./actual/003.wrong_pairing/load.stderr -270/426 Test #401: Test_003.wrong_pairing ................................. Passed 0.13 sec +270/426 Test #401: Test_003.wrong_pairing ................................. Passed 0.15 sec test 402 Start 402: Test_003.wrong_pairing-sa-hot @@ -11163,7 +11182,7 @@ 402: Test timeout computed to be: 1500 402: running 003.wrong_pairing-sa-hot 402: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing-sa-hot/load.stdout 2>./actual/003.wrong_pairing-sa-hot/load.stderr -271/426 Test #402: Test_003.wrong_pairing-sa-hot .......................... Passed 0.13 sec +271/426 Test #402: Test_003.wrong_pairing-sa-hot .......................... Passed 0.14 sec test 403 Start 403: Test_003.wrong_pairing-sa-cold @@ -11172,7 +11191,7 @@ 403: Test timeout computed to be: 1500 403: running 003.wrong_pairing-sa-cold 403: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing-sa-cold/load.stdout 2>./actual/003.wrong_pairing-sa-cold/load.stderr -272/426 Test #403: Test_003.wrong_pairing-sa-cold ......................... Passed 0.11 sec +272/426 Test #403: Test_003.wrong_pairing-sa-cold ......................... Passed 0.14 sec test 404 Start 404: Test_004.truncated.fail @@ -11181,7 +11200,7 @@ 404: Test timeout computed to be: 1500 404: running 004.truncated.fail 404: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.fail/load.stdout 2>./actual/004.truncated.fail/load.stderr -273/426 Test #404: Test_004.truncated.fail ................................ Passed 1.10 sec +273/426 Test #404: Test_004.truncated.fail ................................ Passed 1.47 sec test 405 Start 405: Test_004.truncated.pass @@ -11190,7 +11209,7 @@ 405: Test timeout computed to be: 1500 405: running 004.truncated.pass 405: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass/load.stdout 2>./actual/004.truncated.pass/load.stderr -274/426 Test #405: Test_004.truncated.pass ................................ Passed 2.25 sec +274/426 Test #405: Test_004.truncated.pass ................................ Passed 2.55 sec test 406 Start 406: Test_004.truncated.pass-sa-hot @@ -11199,7 +11218,7 @@ 406: Test timeout computed to be: 1500 406: running 004.truncated.pass-sa-hot 406: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-hot/load.stdout 2>./actual/004.truncated.pass-sa-hot/load.stderr -275/426 Test #406: Test_004.truncated.pass-sa-hot ......................... Passed 2.10 sec +275/426 Test #406: Test_004.truncated.pass-sa-hot ......................... Passed 3.08 sec test 407 Start 407: Test_004.truncated.pass-sa-cold @@ -11208,7 +11227,7 @@ 407: Test timeout computed to be: 1500 407: running 004.truncated.pass-sa-cold 407: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-cold/load.stdout 2>./actual/004.truncated.pass-sa-cold/load.stderr -276/426 Test #407: Test_004.truncated.pass-sa-cold ........................ Passed 2.23 sec +276/426 Test #407: Test_004.truncated.pass-sa-cold ........................ Passed 3.35 sec test 408 Start 408: Test_005.offset0 @@ -11217,7 +11236,7 @@ 408: Test timeout computed to be: 1500 408: running 005.offset0 408: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0/load.stdout 2>./actual/005.offset0/load.stderr -277/426 Test #408: Test_005.offset0 ....................................... Passed 0.47 sec +277/426 Test #408: Test_005.offset0 ....................................... Passed 0.51 sec test 409 Start 409: Test_005.offset0-sa-hot @@ -11226,7 +11245,7 @@ 409: Test timeout computed to be: 1500 409: running 005.offset0-sa-hot 409: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0-sa-hot/load.stdout 2>./actual/005.offset0-sa-hot/load.stderr -278/426 Test #409: Test_005.offset0-sa-hot ................................ Passed 0.76 sec +278/426 Test #409: Test_005.offset0-sa-hot ................................ Passed 0.81 sec test 410 Start 410: Test_005.offset0-sa-cold @@ -11235,7 +11254,7 @@ 410: Test timeout computed to be: 1500 410: running 005.offset0-sa-cold 410: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0-sa-cold/load.stdout 2>./actual/005.offset0-sa-cold/load.stderr -279/426 Test #410: Test_005.offset0-sa-cold ............................... Passed 0.66 sec +279/426 Test #410: Test_005.offset0-sa-cold ............................... Passed 0.84 sec test 411 Start 411: Test_005.offset64 @@ -11244,7 +11263,7 @@ 411: Test timeout computed to be: 1500 411: running 005.offset64 411: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64/load.stdout 2>./actual/005.offset64/load.stderr -280/426 Test #411: Test_005.offset64 ...................................... Passed 0.47 sec +280/426 Test #411: Test_005.offset64 ...................................... Passed 0.63 sec test 412 Start 412: Test_005.offset64-sa-hot @@ -11253,7 +11272,7 @@ 412: Test timeout computed to be: 1500 412: running 005.offset64-sa-hot 412: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64-sa-hot/load.stdout 2>./actual/005.offset64-sa-hot/load.stderr -281/426 Test #412: Test_005.offset64-sa-hot ............................... Passed 0.60 sec +281/426 Test #412: Test_005.offset64-sa-hot ............................... Passed 0.82 sec test 413 Start 413: Test_005.offset64-sa-cold @@ -11262,7 +11281,7 @@ 413: Test timeout computed to be: 1500 413: running 005.offset64-sa-cold 413: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64-sa-cold/load.stdout 2>./actual/005.offset64-sa-cold/load.stderr -282/426 Test #413: Test_005.offset64-sa-cold .............................. Passed 0.68 sec +282/426 Test #413: Test_005.offset64-sa-cold .............................. Passed 0.84 sec test 414 Start 414: Test_006.duplicate @@ -11271,7 +11290,7 @@ 414: Test timeout computed to be: 1500 414: running 006.duplicate 414: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/006.duplicate.fq 1>./actual/006.duplicate/load.stdout 2>./actual/006.duplicate/load.stderr -283/426 Test #414: Test_006.duplicate ..................................... Passed 0.38 sec +283/426 Test #414: Test_006.duplicate ..................................... Passed 0.45 sec test 415 Start 415: Test_007.digest.udenfined @@ -11280,7 +11299,7 @@ 415: Test timeout computed to be: 1500 415: running 007.digest.udenfined 415: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/001.read.unsupported.fq 1>./actual/007.digest.udenfined/load.stdout 2>./actual/007.digest.udenfined/load.stderr -284/426 Test #415: Test_007.digest.udenfined .............................. Passed 0.10 sec +284/426 Test #415: Test_007.digest.udenfined .............................. Passed 0.14 sec test 416 Start 416: Test_007.digest.udenfined-sa-hot @@ -11289,7 +11308,7 @@ 416: Test timeout computed to be: 1500 416: running 007.digest.udenfined-sa-hot 416: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --digest input/001.read.unsupported.fq 1>./actual/007.digest.udenfined-sa-hot/load.stdout 2>./actual/007.digest.udenfined-sa-hot/load.stderr -285/426 Test #416: Test_007.digest.udenfined-sa-hot ....................... Passed 0.09 sec +285/426 Test #416: Test_007.digest.udenfined-sa-hot ....................... Passed 0.11 sec test 417 Start 417: Test_007.digest.udenfined-sa-cold @@ -11316,7 +11335,7 @@ 419: Test timeout computed to be: 1500 419: running 007.digest.multiple-sa-hot 419: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-hot/load.stdout 2>./actual/007.digest.multiple-sa-hot/load.stderr -288/426 Test #419: Test_007.digest.multiple-sa-hot ........................ Passed 0.11 sec +288/426 Test #419: Test_007.digest.multiple-sa-hot ........................ Passed 0.14 sec test 420 Start 420: Test_007.digest.multiple-sa-cold @@ -11325,7 +11344,7 @@ 420: Test timeout computed to be: 1500 420: running 007.digest.multiple-sa-cold 420: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-cold/load.stdout 2>./actual/007.digest.multiple-sa-cold/load.stderr -289/426 Test #420: Test_007.digest.multiple-sa-cold ....................... Passed 0.11 sec +289/426 Test #420: Test_007.digest.multiple-sa-cold ....................... Passed 0.14 sec test 421 Start 421: Test_007.digest.groups @@ -11334,7 +11353,7 @@ 421: Test timeout computed to be: 1500 421: running 007.digest.groups 421: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/003.t_R1.fastq.gz input/003.t2_R1.fastq input/003.t3_R1.fastq input/003.t_R2.fastq.gz input/003.t2_R2.fastq input/003.t3_R2.fastq input/003.t_I1.fastq.gz input/003.t2_I1.fastq input/003.t3_I1.fastq 1>./actual/007.digest.groups/load.stdout 2>./actual/007.digest.groups/load.stderr -290/426 Test #421: Test_007.digest.groups ................................. Passed 0.21 sec +290/426 Test #421: Test_007.digest.groups ................................. Passed 0.45 sec test 422 Start 422: Test_007.digest.error @@ -11343,7 +11362,7 @@ 422: Test timeout computed to be: 1500 422: running 007.digest.error 422: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error/load.stdout 2>./actual/007.digest.error/load.stderr -291/426 Test #422: Test_007.digest.error .................................. Passed 0.11 sec +291/426 Test #422: Test_007.digest.error .................................. Passed 0.12 sec test 423 Start 423: Test_007.digest.error-sa-hot @@ -11352,7 +11371,7 @@ 423: Test timeout computed to be: 1500 423: running 007.digest.error-sa-hot 423: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error-sa-hot/load.stdout 2>./actual/007.digest.error-sa-hot/load.stderr -292/426 Test #423: Test_007.digest.error-sa-hot ........................... Passed 0.11 sec +292/426 Test #423: Test_007.digest.error-sa-hot ........................... Passed 0.17 sec test 424 Start 424: Test_007.digest.error-sa-cold @@ -11361,7 +11380,7 @@ 424: Test timeout computed to be: 1500 424: running 007.digest.error-sa-cold 424: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error-sa-cold/load.stdout 2>./actual/007.digest.error-sa-cold/load.stderr -293/426 Test #424: Test_007.digest.error-sa-cold .......................... Passed 0.11 sec +293/426 Test #424: Test_007.digest.error-sa-cold .......................... Passed 0.15 sec test 425 Start 425: Test_008.telemetry_pass @@ -11370,7 +11389,7 @@ 425: Test timeout computed to be: 1500 425: running 008.telemetry_pass 425: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq -t ./actual/008.telemetry_pass/telemetry 1>./actual/008.telemetry_pass/load.stdout 2>./actual/008.telemetry_pass/load.stderr -294/426 Test #425: Test_008.telemetry_pass ................................ Passed 1.47 sec +294/426 Test #425: Test_008.telemetry_pass ................................ Passed 1.66 sec test 426 Start 426: Test_009.more_than_4_per_spot @@ -11379,7 +11398,7 @@ 426: Test timeout computed to be: 1500 426: running 009.more_than_4_per_spot 426: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --debug input/009.test_I1_001.fastq input/009.test_R1_001.fastq input/009.test_R2_001.fastq input/009.test_R3_001.fastq 1>./actual/009.more_than_4_per_spot/load.stdout 2>./actual/009.more_than_4_per_spot/load.stderr -295/426 Test #426: Test_009.more_than_4_per_spot .......................... Passed 0.31 sec +295/426 Test #426: Test_009.more_than_4_per_spot .......................... Passed 0.59 sec test 427 Start 427: Test_010.errors.invalid_seq_pass1 @@ -11388,7 +11407,7 @@ 427: Test timeout computed to be: 1500 427: running 010.errors.invalid_seq_pass1 427: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1/load.stdout 2>./actual/010.errors.invalid_seq_pass1/load.stderr -296/426 Test #427: Test_010.errors.invalid_seq_pass1 ...................... Passed 0.31 sec +296/426 Test #427: Test_010.errors.invalid_seq_pass1 ...................... Passed 0.39 sec test 428 Start 428: Test_010.errors.invalid_seq_pass1-sa-hot @@ -11397,7 +11416,7 @@ 428: Test timeout computed to be: 1500 428: running 010.errors.invalid_seq_pass1-sa-hot 428: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stderr -297/426 Test #428: Test_010.errors.invalid_seq_pass1-sa-hot ............... Passed 0.41 sec +297/426 Test #428: Test_010.errors.invalid_seq_pass1-sa-hot ............... Passed 0.56 sec test 429 Start 429: Test_010.errors.invalid_seq_pass1-sa-cold @@ -11406,7 +11425,7 @@ 429: Test timeout computed to be: 1500 429: running 010.errors.invalid_seq_pass1-sa-cold 429: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stderr -298/426 Test #429: Test_010.errors.invalid_seq_pass1-sa-cold .............. Passed 0.48 sec +298/426 Test #429: Test_010.errors.invalid_seq_pass1-sa-cold .............. Passed 0.52 sec test 430 Start 430: Test_010.errors.invalid_seq_pass2 @@ -11415,7 +11434,7 @@ 430: Test timeout computed to be: 1500 430: running 010.errors.invalid_seq_pass2 430: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2/load.stdout 2>./actual/010.errors.invalid_seq_pass2/load.stderr -299/426 Test #430: Test_010.errors.invalid_seq_pass2 ...................... Passed 0.17 sec +299/426 Test #430: Test_010.errors.invalid_seq_pass2 ...................... Passed 0.22 sec test 431 Start 431: Test_010.errors.invalid_seq_pass2-sa-hot @@ -11424,7 +11443,7 @@ 431: Test timeout computed to be: 1500 431: running 010.errors.invalid_seq_pass2-sa-hot 431: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_pass2-sa-hot/load.stderr -300/426 Test #431: Test_010.errors.invalid_seq_pass2-sa-hot ............... Passed 0.11 sec +300/426 Test #431: Test_010.errors.invalid_seq_pass2-sa-hot ............... Passed 0.21 sec test 432 Start 432: Test_010.errors.invalid_seq_pass2-sa-cold @@ -11433,7 +11452,7 @@ 432: Test timeout computed to be: 1500 432: running 010.errors.invalid_seq_pass2-sa-cold 432: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_pass2-sa-cold/load.stderr -301/426 Test #432: Test_010.errors.invalid_seq_pass2-sa-cold .............. Passed 0.16 sec +301/426 Test #432: Test_010.errors.invalid_seq_pass2-sa-cold .............. Passed 0.20 sec test 433 Start 433: Test_010.errors.invalid_seq_fail @@ -11442,7 +11461,7 @@ 433: Test timeout computed to be: 1500 433: running 010.errors.invalid_seq_fail 433: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail/load.stdout 2>./actual/010.errors.invalid_seq_fail/load.stderr -302/426 Test #433: Test_010.errors.invalid_seq_fail ....................... Passed 0.13 sec +302/426 Test #433: Test_010.errors.invalid_seq_fail ....................... Passed 0.19 sec test 434 Start 434: Test_010.errors.invalid_seq_fail-sa-hot @@ -11451,7 +11470,7 @@ 434: Test timeout computed to be: 1500 434: running 010.errors.invalid_seq_fail-sa-hot 434: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-hot/load.stderr -303/426 Test #434: Test_010.errors.invalid_seq_fail-sa-hot ................ Passed 0.12 sec +303/426 Test #434: Test_010.errors.invalid_seq_fail-sa-hot ................ Passed 0.19 sec test 435 Start 435: Test_010.errors.invalid_seq_fail-sa-cold @@ -11460,7 +11479,7 @@ 435: Test timeout computed to be: 1500 435: running 010.errors.invalid_seq_fail-sa-cold 435: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-cold/load.stderr -304/426 Test #435: Test_010.errors.invalid_seq_fail-sa-cold ............... Passed 0.14 sec +304/426 Test #435: Test_010.errors.invalid_seq_fail-sa-cold ............... Passed 0.19 sec test 436 Start 436: Test_011.nanopore.3 @@ -11469,7 +11488,7 @@ 436: Test timeout computed to be: 1500 436: running 011.nanopore.3 436: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3/load.stdout 2>./actual/011.nanopore.3/load.stderr -305/426 Test #436: Test_011.nanopore.3 .................................... Passed 0.35 sec +305/426 Test #436: Test_011.nanopore.3 .................................... Passed 0.53 sec test 437 Start 437: Test_011.nanopore.3-sa-hot @@ -11478,7 +11497,7 @@ 437: Test timeout computed to be: 1500 437: running 011.nanopore.3-sa-hot 437: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-hot/load.stdout 2>./actual/011.nanopore.3-sa-hot/load.stderr -306/426 Test #437: Test_011.nanopore.3-sa-hot ............................. Passed 0.47 sec +306/426 Test #437: Test_011.nanopore.3-sa-hot ............................. Passed 0.49 sec test 438 Start 438: Test_011.nanopore.3-sa-cold @@ -11487,7 +11506,7 @@ 438: Test timeout computed to be: 1500 438: running 011.nanopore.3-sa-cold 438: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-cold/load.stdout 2>./actual/011.nanopore.3-sa-cold/load.stderr -307/426 Test #438: Test_011.nanopore.3-sa-cold ............................ Passed 0.44 sec +307/426 Test #438: Test_011.nanopore.3-sa-cold ............................ Passed 0.59 sec test 439 Start 439: Test_012.qualities @@ -11496,7 +11515,7 @@ 439: Test timeout computed to be: 1500 439: running 012.qualities 439: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities/load.stdout 2>./actual/012.qualities/load.stderr -308/426 Test #439: Test_012.qualities ..................................... Passed 1.09 sec +308/426 Test #439: Test_012.qualities ..................................... Passed 1.29 sec test 440 Start 440: Test_012.qualities-sa-hot @@ -11505,7 +11524,7 @@ 440: Test timeout computed to be: 1500 440: running 012.qualities-sa-hot 440: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-hot/load.stdout 2>./actual/012.qualities-sa-hot/load.stderr -309/426 Test #440: Test_012.qualities-sa-hot .............................. Passed 1.71 sec +309/426 Test #440: Test_012.qualities-sa-hot .............................. Passed 1.95 sec test 441 Start 441: Test_012.qualities-sa-cold @@ -11514,7 +11533,7 @@ 441: Test timeout computed to be: 1500 441: running 012.qualities-sa-cold 441: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-cold/load.stdout 2>./actual/012.qualities-sa-cold/load.stderr -310/426 Test #441: Test_012.qualities-sa-cold ............................. Passed 1.73 sec +310/426 Test #441: Test_012.qualities-sa-cold ............................. Passed 1.88 sec test 442 Start 442: Test_012.qualities_with_types-sa-hot @@ -11523,7 +11542,7 @@ 442: Test timeout computed to be: 1500 442: running 012.qualities_with_types-sa-hot 442: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities_with_types-sa-hot/load.stdout 2>./actual/012.qualities_with_types-sa-hot/load.stderr -311/426 Test #442: Test_012.qualities_with_types-sa-hot ................... Passed 1.72 sec +311/426 Test #442: Test_012.qualities_with_types-sa-hot ................... Passed 2.31 sec test 443 Start 443: Test_012.qualities_with_types-sa-cold @@ -11532,7 +11551,7 @@ 443: Test timeout computed to be: 1500 443: running 012.qualities_with_types-sa-cold 443: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities_with_types-sa-cold/load.stdout 2>./actual/012.qualities_with_types-sa-cold/load.stderr -312/426 Test #443: Test_012.qualities_with_types-sa-cold .................. Passed 1.73 sec +312/426 Test #443: Test_012.qualities_with_types-sa-cold .................. Passed 2.03 sec test 444 Start 444: Test_013.no-reads @@ -11541,7 +11560,7 @@ 444: Test timeout computed to be: 1500 444: running 013.no-reads 444: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads/load.stdout 2>./actual/013.no-reads/load.stderr -313/426 Test #444: Test_013.no-reads ...................................... Passed 9.45 sec +313/426 Test #444: Test_013.no-reads ...................................... Passed 24.02 sec test 445 Start 445: Test_013.no-reads-sa-hot @@ -11550,7 +11569,7 @@ 445: Test timeout computed to be: 1500 445: running 013.no-reads-sa-hot 445: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-hot/load.stdout 2>./actual/013.no-reads-sa-hot/load.stderr -314/426 Test #445: Test_013.no-reads-sa-hot ............................... Passed 9.86 sec +314/426 Test #445: Test_013.no-reads-sa-hot ............................... Passed 25.05 sec test 446 Start 446: Test_013.no-reads-sa-cold @@ -11559,7 +11578,7 @@ 446: Test timeout computed to be: 1500 446: running 013.no-reads-sa-cold 446: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-cold/load.stdout 2>./actual/013.no-reads-sa-cold/load.stderr -315/426 Test #446: Test_013.no-reads-sa-cold .............................. Passed 14.12 sec +315/426 Test #446: Test_013.no-reads-sa-cold .............................. Passed 37.35 sec test 447 Start 447: Test_014.2files_bad_sequence @@ -11568,7 +11587,7 @@ 447: Test timeout computed to be: 1500 447: running 014.2files_bad_sequence 447: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/014.R1.fastq input/014.R2.fastq 1>./actual/014.2files_bad_sequence/load.stdout 2>./actual/014.2files_bad_sequence/load.stderr -316/426 Test #447: Test_014.2files_bad_sequence ........................... Passed 0.51 sec +316/426 Test #447: Test_014.2files_bad_sequence ........................... Passed 0.61 sec test 448 Start 448: Test_015.pending_spots @@ -11577,7 +11596,7 @@ 448: Test timeout computed to be: 1500 448: running 015.pending_spots 448: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots/load.stdout 2>./actual/015.pending_spots/load.stderr -317/426 Test #448: Test_015.pending_spots ................................. Passed 0.46 sec +317/426 Test #448: Test_015.pending_spots ................................. Passed 0.56 sec test 449 Start 449: Test_015.pending_spots-sa-hot @@ -11586,7 +11605,7 @@ 449: Test timeout computed to be: 1500 449: running 015.pending_spots-sa-hot 449: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots-sa-hot/load.stdout 2>./actual/015.pending_spots-sa-hot/load.stderr -318/426 Test #449: Test_015.pending_spots-sa-hot .......................... Passed 0.95 sec +318/426 Test #449: Test_015.pending_spots-sa-hot .......................... Passed 0.92 sec test 450 Start 450: Test_015.pending_spots-sa-cold @@ -11595,7 +11614,7 @@ 450: Test timeout computed to be: 1500 450: running 015.pending_spots-sa-cold 450: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots-sa-cold/load.stdout 2>./actual/015.pending_spots-sa-cold/load.stderr -319/426 Test #450: Test_015.pending_spots-sa-cold ......................... Passed 0.72 sec +319/426 Test #450: Test_015.pending_spots-sa-cold ......................... Passed 0.94 sec test 451 Start 451: Test_016.set.platform @@ -11604,7 +11623,7 @@ 451: Test timeout computed to be: 1500 451: running 016.set.platform 451: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --platform=BGISEQ input/001.R1.fastq -t ./actual/016.set.platform/telemetry 1>./actual/016.set.platform/load.stdout 2>./actual/016.set.platform/load.stderr -320/426 Test #451: Test_016.set.platform .................................. Passed 0.35 sec +320/426 Test #451: Test_016.set.platform .................................. Passed 0.44 sec test 452 Start 452: Test_DbMetaSingleFile @@ -11615,7 +11634,7 @@ 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr 452: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaSingleFile/db: Is a directory 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr -321/426 Test #452: Test_DbMetaSingleFile .................................. Passed 1.20 sec +321/426 Test #452: Test_DbMetaSingleFile .................................. Passed 1.78 sec test 453 Start 453: Test_DbMetaMultipleFiles @@ -11626,7 +11645,7 @@ 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr 453: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaMultipleFiles/db: Is a directory 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr -322/426 Test #453: Test_DbMetaMultipleFiles ............................... Passed 1.30 sec +322/426 Test #453: Test_DbMetaMultipleFiles ............................... Passed 2.09 sec test 454 Start 454: Test_sra_sort_meta_copy @@ -11634,7 +11653,7 @@ 454: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort 454: Test timeout computed to be: 1500 454: Files before.xml and after.xml are identical -323/426 Test #454: Test_sra_sort_meta_copy ................................ Passed 3.02 sec +323/426 Test #454: Test_sra_sort_meta_copy ................................ Passed 7.28 sec test 455 Start 455: Test_Align_samextract @@ -11726,7 +11745,7 @@ 455: Fuzz_Hangs (0 s) 455: 455: *** No errors detected (0 s total) -324/426 Test #455: Test_Align_samextract .................................. Passed 0.41 sec +324/426 Test #455: Test_Align_samextract .................................. Passed 0.99 sec test 457 Start 457: Test_Align_Cache @@ -11734,7 +11753,7 @@ 457: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache 457: Test timeout computed to be: 1500 457: testing align-cache -325/426 Test #457: Test_Align_Cache ....................................... Passed 0.59 sec +325/426 Test #457: Test_Align_Cache ....................................... Passed 1.54 sec test 458 Start 458: Test_KFF @@ -11746,7 +11765,7 @@ 458: MagicFileFormat (0 s) 458: 458: *** No errors detected (0 s total) -326/426 Test #458: Test_KFF ............................................... Passed 0.05 sec +326/426 Test #458: Test_KFF ............................................... Passed 0.09 sec test 459 Start 459: Test_Copycat_Help @@ -11875,7 +11894,7 @@ 459: 459: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/copycat : 3.2.1 459: -327/426 Test #459: Test_Copycat_Help ...................................... Passed 0.04 sec +327/426 Test #459: Test_Copycat_Help ...................................... Passed 0.15 sec test 460 Start 460: Test_Copycat_Bad_Name @@ -11884,7 +11903,7 @@ 460: Test timeout computed to be: 1500 460: testing copycat expected output for file name with % 460: copycat test file name with % succeeded -328/426 Test #460: Test_Copycat_Bad_Name .................................. Passed 1.02 sec +328/426 Test #460: Test_Copycat_Bad_Name .................................. Passed 1.24 sec test 461 Start 461: Test_Copycat_IdenticalCopy @@ -11893,7 +11912,7 @@ 461: Test timeout computed to be: 1500 461: testing copycat copy 461: copycat copy succeeded -329/426 Test #461: Test_Copycat_IdenticalCopy ............................. Passed 0.16 sec +329/426 Test #461: Test_Copycat_IdenticalCopy ............................. Passed 0.28 sec test 462 Start 462: Test_Copycat_FastqParser @@ -11902,7 +11921,7 @@ 462: Test timeout computed to be: 1500 462: testing copycat fastq parser 462: copycat fastq parser succeeded -330/426 Test #462: Test_Copycat_FastqParser ............................... Passed 0.61 sec +330/426 Test #462: Test_Copycat_FastqParser ............................... Passed 0.98 sec test 463 Start 463: Test_MakeReadFilter @@ -11910,7 +11929,7 @@ 463: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter 463: Test timeout computed to be: 1500 463: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /usr/lib/aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp -331/426 Test #463: Test_MakeReadFilter .................................... Passed 0.60 sec +331/426 Test #463: Test_MakeReadFilter .................................... Passed 2.02 sec test 464 Start 464: Test_Read_filter_redact_Check_exit_code @@ -11918,7 +11937,7 @@ 464: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 464: Test timeout computed to be: 1500 464: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/read-filter-redact] -332/426 Test #464: Test_Read_filter_redact_Check_exit_code ................ Passed 0.16 sec +332/426 Test #464: Test_Read_filter_redact_Check_exit_code ................ Passed 0.35 sec test 465 Start 465: Test_Read_filter_redact @@ -11926,7 +11945,7 @@ 465: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 465: Test timeout computed to be: 1500 465: Testing read-filter-redact from /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin -333/426 Test #465: Test_Read_filter_redact ................................ Passed 0.63 sec +333/426 Test #465: Test_Read_filter_redact ................................ Passed 1.37 sec test 466 Start 466: Test_VDB_Copy_Check_exit_code @@ -11934,16 +11953,16 @@ 466: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy 466: Test timeout computed to be: 1500 466: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-copy] -334/426 Test #466: Test_VDB_Copy_Check_exit_code .......................... Passed 0.10 sec +334/426 Test #466: Test_VDB_Copy_Check_exit_code .......................... Passed 0.24 sec test 468 Start 468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession 468: Test command: /usr/bin/sh "-c" "./return_code_on_error.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 468: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy 468: Test timeout computed to be: 1500 -468: 2026-05-20T15:16:51 vdb-copy.3.2.1 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table +468: 2025-04-17T09:21:23 vdb-copy.3.2.1 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table 468: SUCCESS: vdb-copy returned 3 if ask to copy a none-existing object. -335/426 Test #468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession ......... Passed 0.11 sec +335/426 Test #468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession ......... Passed 0.19 sec test 470 Start 470: Test_VDB_Diff_Check_exit_code @@ -11952,7 +11971,7 @@ 470: Test timeout computed to be: 1500 470: WARNING[TEST1] help message is in 'STDOUT' 470: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-diff] -336/426 Test #470: Test_VDB_Diff_Check_exit_code .......................... Passed 0.11 sec +336/426 Test #470: Test_VDB_Diff_Check_exit_code .......................... Passed 0.30 sec test 473 Start 473: Test_qa-stats_Input @@ -11966,7 +11985,7 @@ 473: Fastq_File (0 s) 473: 473: *** No errors detected (0 s total) -337/426 Test #473: Test_qa-stats_Input .................................... Passed 0.02 sec +337/426 Test #473: Test_qa-stats_Input .................................... Passed 0.04 sec test 474 Start 474: Test_qa-stats_Output @@ -11995,7 +12014,7 @@ 474: InsertMembers_compact (0 s) 474: 474: *** No errors detected (0 s total) -338/426 Test #474: Test_qa-stats_Output ................................... Passed 0.01 sec +338/426 Test #474: Test_qa-stats_Output ................................... Passed 0.04 sec test 475 Start 475: Test_qa-stats_Fingerprint @@ -12012,7 +12031,7 @@ 475: WrapAround (0 s) 475: 475: *** No errors detected (0 s total) -339/426 Test #475: Test_qa-stats_Fingerprint .............................. Passed 0.02 sec +339/426 Test #475: Test_qa-stats_Fingerprint .............................. Passed 0.04 sec test 476 Start 476: Test_qa-stats_Hashing @@ -12042,7 +12061,7 @@ 476: SHA_512 (0 s) 476: 476: *** No errors detected (0 s total) -340/426 Test #476: Test_qa-stats_Hashing .................................. Passed 0.02 sec +340/426 Test #476: Test_qa-stats_Hashing .................................. Passed 0.04 sec test 477 Start 477: Test_qa-stats @@ -12053,576 +12072,576 @@ 477: python3 found 477: /usr/bin/python3 477: Testing with default parameters. -477: progress: 100 records, per second: 63710.5 -477: progress: 100 records, per second: 14719.7 -477: progress: 100 records, per second: 22428.4 +477: progress: 100 records, per second: 1317.43 +477: progress: 100 records, per second: 2086.57 +477: progress: 100 records, per second: 5820.81 477: Testing with one biological read. -477: progress: 100 records, per second: 66718.3 -477: progress: 100 records, per second: 15077.9 -477: progress: 100 records, per second: 20570 +477: progress: 100 records, per second: 68229.1 +477: progress: 100 records, per second: 2154.47 +477: progress: 100 records, per second: 8466.23 477: Testing with one technical read. -477: progress: 100 records, per second: 55380.8 -477: progress: 100 records, per second: 14153 -477: progress: 100 records, per second: 21176.7 +477: progress: 100 records, per second: 56290.7 +477: progress: 100 records, per second: 2609.61 +477: progress: 100 records, per second: 2154.24 477: Testing with two biological read. -477: progress: 102 records, per second: 54817.5 -477: progress: 102 records, per second: 15202.3 -477: progress: 102 records, per second: 13871.6 +477: progress: 101 records, per second: 67484 +477: progress: 101 records, per second: 2110.99 +477: progress: 101 records, per second: 3628.54 477: Testing with one biological and one technical read. -477: progress: 101 records, per second: 56477.6 -477: progress: 101 records, per second: 4949.04 -477: progress: 101 records, per second: 56939.9 +477: progress: 100 records, per second: 55582.4 +477: progress: 100 records, per second: 1653.75 +477: progress: 100 records, per second: 2913.85 477: Testing with multiple layouts. -477: progress: 101 records, per second: 62582.1 -477: progress: 101 records, per second: 9453.53 -477: progress: 101 records, per second: 22747.1 -341/426 Test #477: Test_qa-stats .......................................... Passed 1.48 sec +477: progress: 100 records, per second: 62174.7 +477: progress: 100 records, per second: 2782.25 +477: progress: 100 records, per second: 3114.74 +341/426 Test #477: Test_qa-stats .......................................... Passed 6.06 sec test 478 Start 478: Test_qa_stats_001.R1.fastq 478: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/001.R1.fastq 1>actual/001.R1.fastq.stdout 2>actual/001.R1.fastq.stderr" 478: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 478: Test timeout computed to be: 1500 -342/426 Test #478: Test_qa_stats_001.R1.fastq ............................. Passed 0.00 sec +342/426 Test #478: Test_qa_stats_001.R1.fastq ............................. Passed 0.04 sec test 479 Start 479: Test_qa_stats_003.R1.fastq 479: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.R1.fastq 1>actual/003.R1.fastq.stdout 2>actual/003.R1.fastq.stderr" 479: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 479: Test timeout computed to be: 1500 -343/426 Test #479: Test_qa_stats_003.R1.fastq ............................. Passed 0.00 sec +343/426 Test #479: Test_qa_stats_003.R1.fastq ............................. Passed 0.07 sec test 480 Start 480: Test_qa_stats_003.R2.fastq 480: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.R2.fastq 1>actual/003.R2.fastq.stdout 2>actual/003.R2.fastq.stderr" 480: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 480: Test timeout computed to be: 1500 -344/426 Test #480: Test_qa_stats_003.R2.fastq ............................. Passed 0.00 sec +344/426 Test #480: Test_qa_stats_003.R2.fastq ............................. Passed 0.04 sec test 481 Start 481: Test_qa_stats_003._I1.fastq 481: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003._I1.fastq 1>actual/003._I1.fastq.stdout 2>actual/003._I1.fastq.stderr" 481: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 481: Test timeout computed to be: 1500 -345/426 Test #481: Test_qa_stats_003._I1.fastq ............................ Passed 0.00 sec +345/426 Test #481: Test_qa_stats_003._I1.fastq ............................ Passed 0.04 sec test 482 Start 482: Test_qa_stats_003.t_I1.fastq 482: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_I1.fastq 1>actual/003.t_I1.fastq.stdout 2>actual/003.t_I1.fastq.stderr" 482: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 482: Test timeout computed to be: 1500 -346/426 Test #482: Test_qa_stats_003.t_I1.fastq ........................... Passed 0.00 sec +346/426 Test #482: Test_qa_stats_003.t_I1.fastq ........................... Passed 0.04 sec test 483 Start 483: Test_qa_stats_003.t_R1.fastq 483: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_R1.fastq 1>actual/003.t_R1.fastq.stdout 2>actual/003.t_R1.fastq.stderr" 483: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 483: Test timeout computed to be: 1500 -347/426 Test #483: Test_qa_stats_003.t_R1.fastq ........................... Passed 0.00 sec +347/426 Test #483: Test_qa_stats_003.t_R1.fastq ........................... Passed 0.04 sec test 484 Start 484: Test_qa_stats_003.t_R2.fastq 484: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_R2.fastq 1>actual/003.t_R2.fastq.stdout 2>actual/003.t_R2.fastq.stderr" 484: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 484: Test timeout computed to be: 1500 -348/426 Test #484: Test_qa_stats_003.t_R2.fastq ........................... Passed 0.01 sec +348/426 Test #484: Test_qa_stats_003.t_R2.fastq ........................... Passed 0.05 sec test 485 Start 485: Test_qa_stats_009.test_I1_001.fastq 485: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_I1_001.fastq 1>actual/009.test_I1_001.fastq.stdout 2>actual/009.test_I1_001.fastq.stderr" 485: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 485: Test timeout computed to be: 1500 -349/426 Test #485: Test_qa_stats_009.test_I1_001.fastq .................... Passed 0.01 sec +349/426 Test #485: Test_qa_stats_009.test_I1_001.fastq .................... Passed 0.07 sec test 486 Start 486: Test_qa_stats_009.test_R1_001.fastq 486: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R1_001.fastq 1>actual/009.test_R1_001.fastq.stdout 2>actual/009.test_R1_001.fastq.stderr" 486: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 486: Test timeout computed to be: 1500 -350/426 Test #486: Test_qa_stats_009.test_R1_001.fastq .................... Passed 0.01 sec +350/426 Test #486: Test_qa_stats_009.test_R1_001.fastq .................... Passed 0.09 sec test 487 Start 487: Test_qa_stats_009.test_R2_001.fastq 487: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R2_001.fastq 1>actual/009.test_R2_001.fastq.stdout 2>actual/009.test_R2_001.fastq.stderr" 487: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 487: Test timeout computed to be: 1500 -351/426 Test #487: Test_qa_stats_009.test_R2_001.fastq .................... Passed 0.01 sec +351/426 Test #487: Test_qa_stats_009.test_R2_001.fastq .................... Passed 0.08 sec test 488 Start 488: Test_qa_stats_009.test_R3_001.fastq 488: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R3_001.fastq 1>actual/009.test_R3_001.fastq.stdout 2>actual/009.test_R3_001.fastq.stderr" 488: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 488: Test timeout computed to be: 1500 -352/426 Test #488: Test_qa_stats_009.test_R3_001.fastq .................... Passed 0.01 sec +352/426 Test #488: Test_qa_stats_009.test_R3_001.fastq .................... Passed 0.12 sec test 489 Start 489: Test_qa_stats_012.test2_I1_001.fastq 489: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_I1_001.fastq 1>actual/012.test2_I1_001.fastq.stdout 2>actual/012.test2_I1_001.fastq.stderr" 489: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 489: Test timeout computed to be: 1500 -353/426 Test #489: Test_qa_stats_012.test2_I1_001.fastq ................... Passed 0.00 sec +353/426 Test #489: Test_qa_stats_012.test2_I1_001.fastq ................... Passed 0.04 sec test 490 Start 490: Test_qa_stats_012.test2_R1_001.fastq 490: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_R1_001.fastq 1>actual/012.test2_R1_001.fastq.stdout 2>actual/012.test2_R1_001.fastq.stderr" 490: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 490: Test timeout computed to be: 1500 -354/426 Test #490: Test_qa_stats_012.test2_R1_001.fastq ................... Passed 0.00 sec +354/426 Test #490: Test_qa_stats_012.test2_R1_001.fastq ................... Passed 0.05 sec test 491 Start 491: Test_qa_stats_012.test2_R2_001.fastq 491: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_R2_001.fastq 1>actual/012.test2_R2_001.fastq.stdout 2>actual/012.test2_R2_001.fastq.stderr" 491: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 491: Test timeout computed to be: 1500 -355/426 Test #491: Test_qa_stats_012.test2_R2_001.fastq ................... Passed 0.00 sec +355/426 Test #491: Test_qa_stats_012.test2_R2_001.fastq ................... Passed 0.04 sec test 492 Start 492: Test_qa_stats_012.test_I1_001.fastq 492: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_I1_001.fastq 1>actual/012.test_I1_001.fastq.stdout 2>actual/012.test_I1_001.fastq.stderr" 492: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 492: Test timeout computed to be: 1500 -356/426 Test #492: Test_qa_stats_012.test_I1_001.fastq .................... Passed 0.00 sec +356/426 Test #492: Test_qa_stats_012.test_I1_001.fastq .................... Passed 0.04 sec test 493 Start 493: Test_qa_stats_012.test_R1_001.fastq 493: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_R1_001.fastq 1>actual/012.test_R1_001.fastq.stdout 2>actual/012.test_R1_001.fastq.stderr" 493: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 493: Test timeout computed to be: 1500 -357/426 Test #493: Test_qa_stats_012.test_R1_001.fastq .................... Passed 0.00 sec +357/426 Test #493: Test_qa_stats_012.test_R1_001.fastq .................... Passed 0.04 sec test 494 Start 494: Test_qa_stats_012.test_R2_001.fastq 494: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_R2_001.fastq 1>actual/012.test_R2_001.fastq.stdout 2>actual/012.test_R2_001.fastq.stderr" 494: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 494: Test timeout computed to be: 1500 -358/426 Test #494: Test_qa_stats_012.test_R2_001.fastq .................... Passed 0.00 sec +358/426 Test #494: Test_qa_stats_012.test_R2_001.fastq .................... Passed 0.04 sec test 495 Start 495: Test_qa_stats_013.t_I1.fastq 495: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_I1.fastq 1>actual/013.t_I1.fastq.stdout 2>actual/013.t_I1.fastq.stderr" 495: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 495: Test timeout computed to be: 1500 -359/426 Test #495: Test_qa_stats_013.t_I1.fastq ........................... Passed 0.05 sec +359/426 Test #495: Test_qa_stats_013.t_I1.fastq ........................... Passed 1.82 sec test 496 Start 496: Test_qa_stats_013.t_I2.fastq 496: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_I2.fastq 1>actual/013.t_I2.fastq.stdout 2>actual/013.t_I2.fastq.stderr" 496: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 496: Test timeout computed to be: 1500 -360/426 Test #496: Test_qa_stats_013.t_I2.fastq ........................... Passed 0.05 sec +360/426 Test #496: Test_qa_stats_013.t_I2.fastq ........................... Passed 4.03 sec test 497 Start 497: Test_qa_stats_013.t_R1.fastq 497: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_R1.fastq 1>actual/013.t_R1.fastq.stdout 2>actual/013.t_R1.fastq.stderr" 497: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 497: Test timeout computed to be: 1500 -361/426 Test #497: Test_qa_stats_013.t_R1.fastq ........................... Passed 0.09 sec +361/426 Test #497: Test_qa_stats_013.t_R1.fastq ........................... Passed 1.37 sec test 498 Start 498: Test_qa_stats_013.t_R2.fastq 498: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_R2.fastq 1>actual/013.t_R2.fastq.stdout 2>actual/013.t_R2.fastq.stderr" 498: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 498: Test timeout computed to be: 1500 -362/426 Test #498: Test_qa_stats_013.t_R2.fastq ........................... Passed 0.20 sec +362/426 Test #498: Test_qa_stats_013.t_R2.fastq ........................... Passed 0.70 sec test 499 Start 499: Test_qa_stats_014.R1.fastq 499: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/014.R1.fastq 1>actual/014.R1.fastq.stdout 2>actual/014.R1.fastq.stderr" 499: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 499: Test timeout computed to be: 1500 -363/426 Test #499: Test_qa_stats_014.R1.fastq ............................. Passed 0.00 sec +363/426 Test #499: Test_qa_stats_014.R1.fastq ............................. Passed 0.03 sec test 500 Start 500: Test_qa_stats_014.R2.fastq 500: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/014.R2.fastq 1>actual/014.R2.fastq.stdout 2>actual/014.R2.fastq.stderr" 500: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 500: Test timeout computed to be: 1500 -364/426 Test #500: Test_qa_stats_014.R2.fastq ............................. Passed 0.00 sec +364/426 Test #500: Test_qa_stats_014.R2.fastq ............................. Passed 0.04 sec test 501 Start 501: Test_qa_stats_1.1.fastq 501: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.1.fastq 1>actual/1.1.fastq.stdout 2>actual/1.1.fastq.stderr" 501: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 501: Test timeout computed to be: 1500 -365/426 Test #501: Test_qa_stats_1.1.fastq ................................ Passed 0.00 sec +365/426 Test #501: Test_qa_stats_1.1.fastq ................................ Passed 0.01 sec test 502 Start 502: Test_qa_stats_1.2.fastq 502: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.2.fastq 1>actual/1.2.fastq.stdout 2>actual/1.2.fastq.stderr" 502: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 502: Test timeout computed to be: 1500 -366/426 Test #502: Test_qa_stats_1.2.fastq ................................ Passed 0.00 sec +366/426 Test #502: Test_qa_stats_1.2.fastq ................................ Passed 0.06 sec test 503 Start 503: Test_qa_stats_1.3.fastq 503: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.3.fastq 1>actual/1.3.fastq.stdout 2>actual/1.3.fastq.stderr" 503: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 503: Test timeout computed to be: 1500 -367/426 Test #503: Test_qa_stats_1.3.fastq ................................ Passed 0.00 sec +367/426 Test #503: Test_qa_stats_1.3.fastq ................................ Passed 0.04 sec test 504 Start 504: Test_qa_stats_1.4.fastq 504: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.4.fastq 1>actual/1.4.fastq.stdout 2>actual/1.4.fastq.stderr" 504: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 504: Test timeout computed to be: 1500 -368/426 Test #504: Test_qa_stats_1.4.fastq ................................ Passed 0.00 sec +368/426 Test #504: Test_qa_stats_1.4.fastq ................................ Passed 0.04 sec test 505 Start 505: Test_qa_stats_10.0.fastq 505: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/10.0.fastq 1>actual/10.0.fastq.stdout 2>actual/10.0.fastq.stderr" 505: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 505: Test timeout computed to be: 1500 -369/426 Test #505: Test_qa_stats_10.0.fastq ............................... Passed 0.00 sec +369/426 Test #505: Test_qa_stats_10.0.fastq ............................... Passed 0.05 sec test 506 Start 506: Test_qa_stats_11.0.1.fasta 506: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.0.1.fasta 1>actual/11.0.1.fasta.stdout 2>actual/11.0.1.fasta.stderr" 506: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 506: Test timeout computed to be: 1500 -370/426 Test #506: Test_qa_stats_11.0.1.fasta ............................. Passed 0.00 sec +370/426 Test #506: Test_qa_stats_11.0.1.fasta ............................. Passed 0.03 sec test 507 Start 507: Test_qa_stats_11.0.2.fasta 507: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.0.2.fasta 1>actual/11.0.2.fasta.stdout 2>actual/11.0.2.fasta.stderr" 507: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 507: Test timeout computed to be: 1500 -371/426 Test #507: Test_qa_stats_11.0.2.fasta ............................. Passed 0.00 sec +371/426 Test #507: Test_qa_stats_11.0.2.fasta ............................. Passed 0.05 sec test 508 Start 508: Test_qa_stats_11.1.1.fastq 508: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.1.1.fastq 1>actual/11.1.1.fastq.stdout 2>actual/11.1.1.fastq.stderr" 508: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 508: Test timeout computed to be: 1500 -372/426 Test #508: Test_qa_stats_11.1.1.fastq ............................. Passed 0.00 sec +372/426 Test #508: Test_qa_stats_11.1.1.fastq ............................. Passed 0.05 sec test 509 Start 509: Test_qa_stats_11.1.2.fastq 509: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.1.2.fastq 1>actual/11.1.2.fastq.stdout 2>actual/11.1.2.fastq.stderr" 509: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 509: Test timeout computed to be: 1500 -373/426 Test #509: Test_qa_stats_11.1.2.fastq ............................. Passed 0.00 sec +373/426 Test #509: Test_qa_stats_11.1.2.fastq ............................. Passed 0.06 sec test 510 Start 510: Test_qa_stats_12.0.fastq 510: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.0.fastq 1>actual/12.0.fastq.stdout 2>actual/12.0.fastq.stderr" 510: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 510: Test timeout computed to be: 1500 -374/426 Test #510: Test_qa_stats_12.0.fastq ............................... Passed 0.00 sec +374/426 Test #510: Test_qa_stats_12.0.fastq ............................... Passed 0.04 sec test 511 Start 511: Test_qa_stats_12.1.fastq 511: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.1.fastq 1>actual/12.1.fastq.stdout 2>actual/12.1.fastq.stderr" 511: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 511: Test timeout computed to be: 1500 -375/426 Test #511: Test_qa_stats_12.1.fastq ............................... Passed 0.00 sec +375/426 Test #511: Test_qa_stats_12.1.fastq ............................... Passed 0.03 sec test 512 Start 512: Test_qa_stats_12.2.fastq 512: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.2.fastq 1>actual/12.2.fastq.stdout 2>actual/12.2.fastq.stderr" 512: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 512: Test timeout computed to be: 1500 -376/426 Test #512: Test_qa_stats_12.2.fastq ............................... Passed 0.00 sec +376/426 Test #512: Test_qa_stats_12.2.fastq ............................... Passed 0.03 sec test 513 Start 513: Test_qa_stats_13.0.fastq 513: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/13.0.fastq 1>actual/13.0.fastq.stdout 2>actual/13.0.fastq.stderr" 513: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 513: Test timeout computed to be: 1500 -377/426 Test #513: Test_qa_stats_13.0.fastq ............................... Passed 0.00 sec +377/426 Test #513: Test_qa_stats_13.0.fastq ............................... Passed 0.03 sec test 514 Start 514: Test_qa_stats_13.1.fastq 514: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/13.1.fastq 1>actual/13.1.fastq.stdout 2>actual/13.1.fastq.stderr" 514: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 514: Test timeout computed to be: 1500 -378/426 Test #514: Test_qa_stats_13.1.fastq ............................... Passed 0.00 sec +378/426 Test #514: Test_qa_stats_13.1.fastq ............................... Passed 0.06 sec test 515 Start 515: Test_qa_stats_14.0.fasta 515: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/14.0.fasta 1>actual/14.0.fasta.stdout 2>actual/14.0.fasta.stderr" 515: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 515: Test timeout computed to be: 1500 -379/426 Test #515: Test_qa_stats_14.0.fasta ............................... Passed 0.00 sec +379/426 Test #515: Test_qa_stats_14.0.fasta ............................... Passed 0.03 sec test 516 Start 516: Test_qa_stats_15.0.fastq 516: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/15.0.fastq 1>actual/15.0.fastq.stdout 2>actual/15.0.fastq.stderr" 516: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 516: Test timeout computed to be: 1500 -380/426 Test #516: Test_qa_stats_15.0.fastq ............................... Passed 0.01 sec +380/426 Test #516: Test_qa_stats_15.0.fastq ............................... Passed 0.05 sec test 517 Start 517: Test_qa_stats_16.0.fasta 517: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/16.0.fasta 1>actual/16.0.fasta.stdout 2>actual/16.0.fasta.stderr" 517: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 517: Test timeout computed to be: 1500 -381/426 Test #517: Test_qa_stats_16.0.fasta ............................... Passed 0.01 sec +381/426 Test #517: Test_qa_stats_16.0.fasta ............................... Passed 0.03 sec test 518 Start 518: Test_qa_stats_16.1.fastq 518: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/16.1.fastq 1>actual/16.1.fastq.stdout 2>actual/16.1.fastq.stderr" 518: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 518: Test timeout computed to be: 1500 -382/426 Test #518: Test_qa_stats_16.1.fastq ............................... Passed 0.00 sec +382/426 Test #518: Test_qa_stats_16.1.fastq ............................... Passed 0.05 sec test 519 Start 519: Test_qa_stats_17.0.fastq 519: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/17.0.fastq 1>actual/17.0.fastq.stdout 2>actual/17.0.fastq.stderr" 519: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 519: Test timeout computed to be: 1500 -383/426 Test #519: Test_qa_stats_17.0.fastq ............................... Passed 0.00 sec +383/426 Test #519: Test_qa_stats_17.0.fastq ............................... Passed 0.06 sec test 520 Start 520: Test_qa_stats_18.0.fastq 520: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/18.0.fastq 1>actual/18.0.fastq.stdout 2>actual/18.0.fastq.stderr" 520: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 520: Test timeout computed to be: 1500 -384/426 Test #520: Test_qa_stats_18.0.fastq ............................... Passed 0.00 sec +384/426 Test #520: Test_qa_stats_18.0.fastq ............................... Passed 0.04 sec test 521 Start 521: Test_qa_stats_2.1.1.fastq 521: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.1.1.fastq 1>actual/2.1.1.fastq.stdout 2>actual/2.1.1.fastq.stderr" 521: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 521: Test timeout computed to be: 1500 -385/426 Test #521: Test_qa_stats_2.1.1.fastq .............................. Passed 0.00 sec +385/426 Test #521: Test_qa_stats_2.1.1.fastq .............................. Passed 0.06 sec test 522 Start 522: Test_qa_stats_2.1.fastq 522: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.1.fastq 1>actual/2.1.fastq.stdout 2>actual/2.1.fastq.stderr" 522: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 522: Test timeout computed to be: 1500 -386/426 Test #522: Test_qa_stats_2.1.fastq ................................ Passed 0.00 sec +386/426 Test #522: Test_qa_stats_2.1.fastq ................................ Passed 0.05 sec test 523 Start 523: Test_qa_stats_2.2.fastq 523: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.2.fastq 1>actual/2.2.fastq.stdout 2>actual/2.2.fastq.stderr" 523: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 523: Test timeout computed to be: 1500 -387/426 Test #523: Test_qa_stats_2.2.fastq ................................ Passed 0.00 sec +387/426 Test #523: Test_qa_stats_2.2.fastq ................................ Passed 0.04 sec test 524 Start 524: Test_qa_stats_2.3.fastq 524: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.3.fastq 1>actual/2.3.fastq.stdout 2>actual/2.3.fastq.stderr" 524: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 524: Test timeout computed to be: 1500 -388/426 Test #524: Test_qa_stats_2.3.fastq ................................ Passed 0.00 sec +388/426 Test #524: Test_qa_stats_2.3.fastq ................................ Passed 0.10 sec test 525 Start 525: Test_qa_stats_2.4.fastq 525: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.4.fastq 1>actual/2.4.fastq.stdout 2>actual/2.4.fastq.stderr" 525: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 525: Test timeout computed to be: 1500 -389/426 Test #525: Test_qa_stats_2.4.fastq ................................ Passed 0.00 sec +389/426 Test #525: Test_qa_stats_2.4.fastq ................................ Passed 0.05 sec test 526 Start 526: Test_qa_stats_2.5.fastq 526: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.5.fastq 1>actual/2.5.fastq.stdout 2>actual/2.5.fastq.stderr" 526: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 526: Test timeout computed to be: 1500 -390/426 Test #526: Test_qa_stats_2.5.fastq ................................ Passed 0.00 sec +390/426 Test #526: Test_qa_stats_2.5.fastq ................................ Passed 0.04 sec test 527 Start 527: Test_qa_stats_2.6.fastq 527: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.6.fastq 1>actual/2.6.fastq.stdout 2>actual/2.6.fastq.stderr" 527: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 527: Test timeout computed to be: 1500 -391/426 Test #527: Test_qa_stats_2.6.fastq ................................ Passed 0.00 sec +391/426 Test #527: Test_qa_stats_2.6.fastq ................................ Passed 0.02 sec test 528 Start 528: Test_qa_stats_2.7.fastq 528: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.7.fastq 1>actual/2.7.fastq.stdout 2>actual/2.7.fastq.stderr" 528: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 528: Test timeout computed to be: 1500 -392/426 Test #528: Test_qa_stats_2.7.fastq ................................ Passed 0.00 sec +392/426 Test #528: Test_qa_stats_2.7.fastq ................................ Passed 0.09 sec test 529 Start 529: Test_qa_stats_2.8.1.fastq 529: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.8.1.fastq 1>actual/2.8.1.fastq.stdout 2>actual/2.8.1.fastq.stderr" 529: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 529: Test timeout computed to be: 1500 -393/426 Test #529: Test_qa_stats_2.8.1.fastq .............................. Passed 0.00 sec +393/426 Test #529: Test_qa_stats_2.8.1.fastq .............................. Passed 0.05 sec test 530 Start 530: Test_qa_stats_2.8.fastq 530: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.8.fastq 1>actual/2.8.fastq.stdout 2>actual/2.8.fastq.stderr" 530: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 530: Test timeout computed to be: 1500 -394/426 Test #530: Test_qa_stats_2.8.fastq ................................ Passed 0.00 sec +394/426 Test #530: Test_qa_stats_2.8.fastq ................................ Passed 0.04 sec test 531 Start 531: Test_qa_stats_2.9.1.fastq 531: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.9.1.fastq 1>actual/2.9.1.fastq.stdout 2>actual/2.9.1.fastq.stderr" 531: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 531: Test timeout computed to be: 1500 -395/426 Test #531: Test_qa_stats_2.9.1.fastq .............................. Passed 0.00 sec +395/426 Test #531: Test_qa_stats_2.9.1.fastq .............................. Passed 0.07 sec test 532 Start 532: Test_qa_stats_2.9.fastq 532: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.9.fastq 1>actual/2.9.fastq.stdout 2>actual/2.9.fastq.stderr" 532: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 532: Test timeout computed to be: 1500 -396/426 Test #532: Test_qa_stats_2.9.fastq ................................ Passed 0.00 sec +396/426 Test #532: Test_qa_stats_2.9.fastq ................................ Passed 0.05 sec test 533 Start 533: Test_qa_stats_3.1a.fastq 533: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.1a.fastq 1>actual/3.1a.fastq.stdout 2>actual/3.1a.fastq.stderr" 533: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 533: Test timeout computed to be: 1500 -397/426 Test #533: Test_qa_stats_3.1a.fastq ............................... Passed 0.00 sec +397/426 Test #533: Test_qa_stats_3.1a.fastq ............................... Passed 0.09 sec test 534 Start 534: Test_qa_stats_3.1b.fastq 534: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.1b.fastq 1>actual/3.1b.fastq.stdout 2>actual/3.1b.fastq.stderr" 534: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 534: Test timeout computed to be: 1500 -398/426 Test #534: Test_qa_stats_3.1b.fastq ............................... Passed 0.00 sec +398/426 Test #534: Test_qa_stats_3.1b.fastq ............................... Passed 0.11 sec test 535 Start 535: Test_qa_stats_3.2a.fastq 535: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.2a.fastq 1>actual/3.2a.fastq.stdout 2>actual/3.2a.fastq.stderr" 535: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 535: Test timeout computed to be: 1500 -399/426 Test #535: Test_qa_stats_3.2a.fastq ............................... Passed 0.00 sec +399/426 Test #535: Test_qa_stats_3.2a.fastq ............................... Passed 0.14 sec test 536 Start 536: Test_qa_stats_3.2b.fastq 536: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.2b.fastq 1>actual/3.2b.fastq.stdout 2>actual/3.2b.fastq.stderr" 536: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 536: Test timeout computed to be: 1500 -400/426 Test #536: Test_qa_stats_3.2b.fastq ............................... Passed 0.00 sec +400/426 Test #536: Test_qa_stats_3.2b.fastq ............................... Passed 0.03 sec test 537 Start 537: Test_qa_stats_3.3a.fastq 537: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.3a.fastq 1>actual/3.3a.fastq.stdout 2>actual/3.3a.fastq.stderr" 537: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 537: Test timeout computed to be: 1500 -401/426 Test #537: Test_qa_stats_3.3a.fastq ............................... Passed 0.00 sec +401/426 Test #537: Test_qa_stats_3.3a.fastq ............................... Passed 0.03 sec test 538 Start 538: Test_qa_stats_3.3b.fastq 538: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.3b.fastq 1>actual/3.3b.fastq.stdout 2>actual/3.3b.fastq.stderr" 538: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 538: Test timeout computed to be: 1500 -402/426 Test #538: Test_qa_stats_3.3b.fastq ............................... Passed 0.00 sec +402/426 Test #538: Test_qa_stats_3.3b.fastq ............................... Passed 0.07 sec test 539 Start 539: Test_qa_stats_3.4a.fastq 539: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.4a.fastq 1>actual/3.4a.fastq.stdout 2>actual/3.4a.fastq.stderr" 539: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 539: Test timeout computed to be: 1500 -403/426 Test #539: Test_qa_stats_3.4a.fastq ............................... Passed 0.00 sec +403/426 Test #539: Test_qa_stats_3.4a.fastq ............................... Passed 0.04 sec test 540 Start 540: Test_qa_stats_3.4b.fastq 540: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.4b.fastq 1>actual/3.4b.fastq.stdout 2>actual/3.4b.fastq.stderr" 540: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 540: Test timeout computed to be: 1500 -404/426 Test #540: Test_qa_stats_3.4b.fastq ............................... Passed 0.00 sec +404/426 Test #540: Test_qa_stats_3.4b.fastq ............................... Passed 0.01 sec test 541 Start 541: Test_qa_stats_4.4.fastq 541: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.4.fastq 1>actual/4.4.fastq.stdout 2>actual/4.4.fastq.stderr" 541: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 541: Test timeout computed to be: 1500 -405/426 Test #541: Test_qa_stats_4.4.fastq ................................ Passed 0.00 sec +405/426 Test #541: Test_qa_stats_4.4.fastq ................................ Passed 0.05 sec test 542 Start 542: Test_qa_stats_4.5.1.fastq 542: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.1.fastq 1>actual/4.5.1.fastq.stdout 2>actual/4.5.1.fastq.stderr" 542: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 542: Test timeout computed to be: 1500 -406/426 Test #542: Test_qa_stats_4.5.1.fastq .............................. Passed 0.00 sec +406/426 Test #542: Test_qa_stats_4.5.1.fastq .............................. Passed 0.04 sec test 543 Start 543: Test_qa_stats_4.5.2.fastq 543: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.2.fastq 1>actual/4.5.2.fastq.stdout 2>actual/4.5.2.fastq.stderr" 543: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 543: Test timeout computed to be: 1500 -407/426 Test #543: Test_qa_stats_4.5.2.fastq .............................. Passed 0.01 sec +407/426 Test #543: Test_qa_stats_4.5.2.fastq .............................. Passed 0.06 sec test 544 Start 544: Test_qa_stats_4.5.fastq 544: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.fastq 1>actual/4.5.fastq.stdout 2>actual/4.5.fastq.stderr" 544: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 544: Test timeout computed to be: 1500 -408/426 Test #544: Test_qa_stats_4.5.fastq ................................ Passed 0.00 sec +408/426 Test #544: Test_qa_stats_4.5.fastq ................................ Passed 0.04 sec test 545 Start 545: Test_qa_stats_4.8.fastq 545: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.8.fastq 1>actual/4.8.fastq.stdout 2>actual/4.8.fastq.stderr" 545: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 545: Test timeout computed to be: 1500 -409/426 Test #545: Test_qa_stats_4.8.fastq ................................ Passed 0.00 sec +409/426 Test #545: Test_qa_stats_4.8.fastq ................................ Passed 0.04 sec test 546 Start 546: Test_qa_stats_4.fastq 546: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.fastq 1>actual/4.fastq.stdout 2>actual/4.fastq.stderr" 546: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 546: Test timeout computed to be: 1500 -410/426 Test #546: Test_qa_stats_4.fastq .................................. Passed 0.00 sec +410/426 Test #546: Test_qa_stats_4.fastq .................................. Passed 0.04 sec test 547 Start 547: Test_qa_stats_6.0.fastq 547: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/6.0.fastq 1>actual/6.0.fastq.stdout 2>actual/6.0.fastq.stderr" 547: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 547: Test timeout computed to be: 1500 -411/426 Test #547: Test_qa_stats_6.0.fastq ................................ Passed 0.00 sec +411/426 Test #547: Test_qa_stats_6.0.fastq ................................ Passed 0.04 sec test 548 Start 548: Test_qa_stats_7.1.fastq 548: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.1.fastq 1>actual/7.1.fastq.stdout 2>actual/7.1.fastq.stderr" 548: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 548: Test timeout computed to be: 1500 -412/426 Test #548: Test_qa_stats_7.1.fastq ................................ Passed 0.00 sec +412/426 Test #548: Test_qa_stats_7.1.fastq ................................ Passed 0.05 sec test 549 Start 549: Test_qa_stats_7.2.fastq 549: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.2.fastq 1>actual/7.2.fastq.stdout 2>actual/7.2.fastq.stderr" 549: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 549: Test timeout computed to be: 1500 -413/426 Test #549: Test_qa_stats_7.2.fastq ................................ Passed 0.00 sec +413/426 Test #549: Test_qa_stats_7.2.fastq ................................ Passed 0.04 sec test 550 Start 550: Test_qa_stats_7.3.fastq 550: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.3.fastq 1>actual/7.3.fastq.stdout 2>actual/7.3.fastq.stderr" 550: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 550: Test timeout computed to be: 1500 -414/426 Test #550: Test_qa_stats_7.3.fastq ................................ Passed 0.00 sec +414/426 Test #550: Test_qa_stats_7.3.fastq ................................ Passed 0.04 sec test 551 Start 551: Test_qa_stats_8.0.fastq 551: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/8.0.fastq 1>actual/8.0.fastq.stdout 2>actual/8.0.fastq.stderr" 551: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 551: Test timeout computed to be: 1500 -415/426 Test #551: Test_qa_stats_8.0.fastq ................................ Passed 0.00 sec +415/426 Test #551: Test_qa_stats_8.0.fastq ................................ Passed 0.05 sec test 552 Start 552: Test_qa_stats_8.1.fastq 552: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/8.1.fastq 1>actual/8.1.fastq.stdout 2>actual/8.1.fastq.stderr" 552: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 552: Test timeout computed to be: 1500 -416/426 Test #552: Test_qa_stats_8.1.fastq ................................ Passed 0.00 sec +416/426 Test #552: Test_qa_stats_8.1.fastq ................................ Passed 0.05 sec test 553 Start 553: Test_qa_stats_9.0.fastq 553: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/9.0.fastq 1>actual/9.0.fastq.stdout 2>actual/9.0.fastq.stderr" 553: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 553: Test timeout computed to be: 1500 -417/426 Test #553: Test_qa_stats_9.0.fastq ................................ Passed 0.00 sec +417/426 Test #553: Test_qa_stats_9.0.fastq ................................ Passed 0.06 sec test 554 Start 554: Test_qa_stats_ERR3487613.fasta 554: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/ERR3487613.fasta 1>actual/ERR3487613.fasta.stdout 2>actual/ERR3487613.fasta.stderr" 554: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 554: Test timeout computed to be: 1500 -418/426 Test #554: Test_qa_stats_ERR3487613.fasta ......................... Passed 0.00 sec +418/426 Test #554: Test_qa_stats_ERR3487613.fasta ......................... Passed 0.04 sec test 555 Start 555: Test_qa_stats_unaligned.fastq 555: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/unaligned.fastq 1>actual/unaligned.fastq.stdout 2>actual/unaligned.fastq.stderr" 555: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 555: Test timeout computed to be: 1500 -419/426 Test #555: Test_qa_stats_unaligned.fastq .......................... Passed 0.00 sec +419/426 Test #555: Test_qa_stats_unaligned.fastq .......................... Passed 0.06 sec test 556 Start 556: Test_qa_stats_Finger_1 @@ -12631,7 +12650,7 @@ 556: Test timeout computed to be: 1500 556: running Test_qa_stats_Finger_1 556: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/1.1.fastq --fingerprint 1>./actual/Test_qa_stats_Finger_1/stdout 2>./actual/Test_qa_stats_Finger_1/stderr -420/426 Test #556: Test_qa_stats_Finger_1 ................................. Passed 0.01 sec +420/426 Test #556: Test_qa_stats_Finger_1 ................................. Passed 0.17 sec test 557 Start 557: Test_qa_stats_Finger_2 @@ -12640,46 +12659,46 @@ 557: Test timeout computed to be: 1500 557: running Test_qa_stats_Finger_2 557: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/001.R1.fastq -f 1>./actual/Test_qa_stats_Finger_2/stdout 2>./actual/Test_qa_stats_Finger_2/stderr -421/426 Test #557: Test_qa_stats_Finger_2 ................................. Passed 0.01 sec +421/426 Test #557: Test_qa_stats_Finger_2 ................................. Passed 0.16 sec test 558 Start 558: Test_Scripts_prepare-sra-names 558: Test command: /usr/bin/perl "test-prepare-sra-names.pl" 558: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 558: Test timeout computed to be: 1500 -422/426 Test #558: Test_Scripts_prepare-sra-names ......................... Passed 0.16 sec +422/426 Test #558: Test_Scripts_prepare-sra-names ......................... Passed 1.57 sec test 559 Start 559: Test_Scripts_fix-sra-names 559: Test command: /usr/bin/perl "test-fix-sra-names.pl" 559: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 559: Test timeout computed to be: 1500 -423/426 Test #559: Test_Scripts_fix-sra-names ............................. Passed 0.10 sec +423/426 Test #559: Test_Scripts_fix-sra-names ............................. Passed 0.71 sec test 560 Start 560: Test_Scripts_prepare-sra-names-py 560: Test command: /usr/bin/perl "test-prepare-sra-names-py.pl" 560: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 560: Test timeout computed to be: 1500 -424/426 Test #560: Test_Scripts_prepare-sra-names-py ...................... Passed 0.45 sec +424/426 Test #560: Test_Scripts_prepare-sra-names-py ...................... Passed 2.50 sec test 561 Start 561: Test_Scripts_fix-sra-names-py 561: Test command: /usr/bin/perl "test-fix-sra-names-py.pl" 561: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 561: Test timeout computed to be: 1500 -425/426 Test #561: Test_Scripts_fix-sra-names-py .......................... Passed 0.25 sec +425/426 Test #561: Test_Scripts_fix-sra-names-py .......................... Passed 1.50 sec test 562 Start 562: Test_GeneralWriterPy 562: Test command: /usr/bin/sh "-c" "/usr/bin/python3 GeneralWriter_Test.py >actual/Test_GeneralWriterPy.gw && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/gw-dumper -v actual/Test_GeneralWriterPy.gw >actual/Test_GeneralWriterPy.stdout && diff actual/Test_GeneralWriterPy.stdout expected/Test_GeneralWriterPy.stdout" 562: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/python 562: Test timeout computed to be: 1500 -426/426 Test #562: Test_GeneralWriterPy ................................... Passed 0.03 sec +426/426 Test #562: Test_GeneralWriterPy ................................... Passed 0.11 sec 100% tests passed, 0 tests failed out of 426 -Total Test time (real) = 147.79 sec +Total Test time (real) = 325.00 sec make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -13222,247 +13241,247 @@ done ls -l debian/tmp/usr/bin total 121284 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 abi-dump -> abi-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 abi-dump.3 -> abi-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 311192 May 20 03:06 abi-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 abi-load -> abi-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 abi-load.3 -> abi-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 866128 May 20 03:06 abi-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 align-cache -> align-cache.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 align-cache.3 -> align-cache.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 285320 May 20 03:06 align-cache.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 align-info -> align-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 align-info.3 -> align-info.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 112752 May 20 03:06 align-info.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 bam-load -> bam-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 bam-load.3 -> bam-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 14283088 May 20 03:08 bam-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 cache-mgr -> cache-mgr.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 cache-mgr.3 -> cache-mgr.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 132880 May 20 03:06 cache-mgr.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 ccextract -> ccextract.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 ccextract.3 -> ccextract.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 319096 May 20 03:06 ccextract.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 cg-load -> cg-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 cg-load.3 -> cg-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 692576 May 20 03:06 cg-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 check-corrupt -> check-corrupt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 May 20 03:16 check-corrupt.3 -> check-corrupt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 294032 May 20 03:06 check-corrupt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 check-redact -> check-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 check-redact.3 -> check-redact.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 112672 May 20 03:06 check-redact.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 compute-coverage -> compute-coverage.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 May 20 03:16 compute-coverage-ngs -> compute-coverage-ngs.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 26 May 20 03:16 compute-coverage-ngs.3 -> compute-coverage-ngs.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2316720 May 20 03:09 compute-coverage-ngs.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 May 20 03:16 compute-coverage.3 -> compute-coverage.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 146144 May 20 03:06 compute-coverage.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 copycat -> copycat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 copycat.3 -> copycat.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 553328 May 20 03:07 copycat.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 crc32sum -> crc32sum.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 crc32sum.3 -> crc32sum.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 99496 May 20 03:07 crc32sum.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 May 20 03:16 dump-blob-boundaries -> dump-blob-boundaries.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 26 May 20 03:16 dump-blob-boundaries.3 -> dump-blob-boundaries.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 87224 May 20 03:06 dump-blob-boundaries.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 dump-ref-fasta -> dump-ref-fasta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 dump-ref-fasta.3 -> dump-ref-fasta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2188608 May 20 03:09 dump-ref-fasta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 fastconv -> fastconv.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 fastconv.3 -> fastconv.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5172888 May 20 03:09 fastconv.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 fasterq-dump -> fasterq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 973104 May 20 03:07 fasterq-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 fasterq-dump.3 -> fasterq-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 fasterq-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 fastq-dump -> fastq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 370840 May 20 03:06 fastq-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 fastq-dump.3 -> fastq-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 fastq-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 fastq-load -> fastq-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 fastq-load.3 -> fastq-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 906160 May 20 03:06 fastq-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 general-loader -> general-loader.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 general-loader.3 -> general-loader.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 1631520 May 20 03:06 general-loader.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 helicos-load -> helicos-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 helicos-load.3 -> helicos-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 840688 May 20 03:06 helicos-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 illumina-dump -> illumina-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 May 20 03:16 illumina-dump.3 -> illumina-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 295952 May 20 03:06 illumina-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 illumina-load -> illumina-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 May 20 03:16 illumina-load.3 -> illumina-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 872704 May 20 03:06 illumina-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 5 May 20 03:16 kar -> kar.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 6 May 20 03:16 kar+ -> kar+.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 kar+.3 -> kar+.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 283696 May 20 03:06 kar+.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 kar+meta -> kar+meta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 kar+meta.3 -> kar+meta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 163576 May 20 03:06 kar+meta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 kar.3 -> kar.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 244776 May 20 03:06 kar.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 kdb-index -> kdb-index.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 kdb-index.3 -> kdb-index.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 98128 May 20 03:07 kdb-index.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 kdbmeta -> kdbmeta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 kdbmeta.3 -> kdbmeta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 126408 May 20 03:06 kdbmeta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 latf-load -> latf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 latf-load.3 -> latf-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 561504 May 20 03:08 latf-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 make-read-filter -> make-read-filter.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 May 20 03:16 make-read-filter.3 -> make-read-filter.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 224240 May 20 03:06 make-read-filter.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 May 20 03:16 md5cp -> md5cp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 md5cp.3 -> md5cp.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 109456 May 20 03:06 md5cp.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 meta-cmp -> meta-cmp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 meta-cmp.3 -> meta-cmp.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 101352 May 20 03:06 meta-cmp.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 meta-copy -> meta-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 meta-copy.3 -> meta-copy.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 101328 May 20 03:06 meta-copy.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 meta-repair -> meta-repair.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 meta-repair.3 -> meta-repair.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 200928 May 20 03:07 meta-repair.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 ngs-pileup -> ngs-pileup.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 ngs-pileup.3 -> ngs-pileup.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2684832 May 20 03:08 ngs-pileup.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 pacbio-correct -> pacbio-correct.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 pacbio-correct.3 -> pacbio-correct.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 95200 May 20 03:07 pacbio-correct.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 pacbio-load -> pacbio-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 pacbio-load.3 -> pacbio-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 540128 May 20 03:06 pacbio-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 pacbio-loadxml -> pacbio-loadxml.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 pacbio-loadxml.3 -> pacbio-loadxml.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 827816 May 20 03:06 pacbio-loadxml.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 pileup-stats -> pileup-stats.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 pileup-stats.3 -> pileup-stats.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2878752 May 20 03:09 pileup-stats.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 prefetch -> prefetch.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 524064 May 20 03:06 prefetch-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 prefetch.3 -> prefetch.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 prefetch.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 rcexplain -> rcexplain.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 rcexplain.3 -> rcexplain.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 90840 May 20 03:06 rcexplain.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 read-filter-redact -> read-filter-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 May 20 03:16 read-filter-redact.3 -> read-filter-redact.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 123296 May 20 03:07 read-filter-redact.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 ref-variation -> ref-variation.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 May 20 03:16 ref-variation.3 -> ref-variation.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 3035216 May 20 03:09 ref-variation.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 rowwritetest -> rowwritetest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 rowwritetest.3 -> rowwritetest.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 108288 May 20 03:07 rowwritetest.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sam-dump -> sam-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 889248 May 20 03:06 sam-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sam-dump.3 -> sam-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sam-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 samview -> samview.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 samview-util -> samview-util.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 samview-util.3 -> samview-util.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 87576 May 20 03:07 samview-util.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 samview.3 -> samview.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 304448 May 20 03:06 samview.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 schema-replace -> schema-replace.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 May 20 03:16 schema-replace.3 -> schema-replace.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 102136 May 20 03:07 schema-replace.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sff-dump -> sff-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sff-dump.3 -> sff-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 283376 May 20 03:06 sff-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sff-load -> sff-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sff-load.3 -> sff-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 872208 May 20 03:06 sff-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 May 20 03:16 sharq -> sharq.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 May 20 03:16 sharq.3 -> sharq.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 44803576 May 20 03:12 sharq.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sortreadtest -> sortreadtest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 sortreadtest.3 -> sortreadtest.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 99024 May 20 03:07 sortreadtest.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sra-info -> sra-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sra-info.3 -> sra-info.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2767800 May 20 03:07 sra-info.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 sra-pileup -> sra-pileup.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 458680 May 20 03:06 sra-pileup-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 sra-pileup.3 -> sra-pileup.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sra-pileup.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 sra-search -> sra-search.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 sra-search.3 -> sra-search.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 4307120 May 20 03:09 sra-search.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sra-sort -> sra-sort.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 sra-sort-cg -> sra-sort-cg.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 sra-sort-cg.3 -> sra-sort-cg.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 851616 May 20 03:06 sra-sort-cg.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sra-sort.3 -> sra-sort.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 851648 May 20 03:06 sra-sort.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sra-stat -> sra-stat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sra-stat.3 -> sra-stat.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 354352 May 20 03:06 sra-stat.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 srapath -> srapath.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 296360 May 20 03:06 srapath-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 srapath.3 -> srapath.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 srapath.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 sratools -> sratools.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 sratools.3 -> sratools.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5396912 May 20 03:07 sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 srf-load -> srf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 srf-load.3 -> srf-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 1016896 May 20 03:06 srf-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 May 20 03:16 test-download -> test-download.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 May 20 03:16 test-download.3 -> test-download.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 108952 May 20 03:07 test-download.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 May 20 03:16 test-read-write-cursor -> test-read-write-cursor.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 28 May 20 03:16 test-read-write-cursor.3 -> test-read-write-cursor.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 94864 May 20 03:07 test-read-write-cursor.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 test-sra -> test-sra.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 test-sra.3 -> test-sra.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 354608 May 20 03:06 test-sra.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 8 May 20 03:16 testld -> testld.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 testld.3 -> testld.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 95888 May 20 03:07 testld.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 txt2kdb -> txt2kdb.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 txt2kdb.3 -> txt2kdb.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 102320 May 20 03:07 txt2kdb.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 var-expand -> var-expand.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 var-expand.3 -> var-expand.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2117704 May 20 03:08 var-expand.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 vdb-config -> vdb-config.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 vdb-config.3 -> vdb-config.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2683928 May 20 03:08 vdb-config.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 vdb-copy -> vdb-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-copy.3 -> vdb-copy.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 356728 May 20 03:07 vdb-copy.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 vdb-decrypt -> vdb-decrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 vdb-decrypt.3 -> vdb-decrypt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 194312 May 20 03:06 vdb-decrypt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 vdb-diff -> vdb-diff.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-diff.3 -> vdb-diff.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 225368 May 20 03:07 vdb-diff.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 vdb-dump -> vdb-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 936760 May 20 03:06 vdb-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-dump.3 -> vdb-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 vdb-encrypt -> vdb-encrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 May 20 03:16 vdb-encrypt.3 -> vdb-encrypt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 127320 May 20 03:06 vdb-encrypt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 May 20 03:16 vdb-lock -> vdb-lock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-lock.3 -> vdb-lock.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 91648 May 20 03:06 vdb-lock.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 May 20 03:16 vdb-sql -> vdb-sql.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 May 20 03:16 vdb-sql.3 -> vdb-sql.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5426240 May 20 03:09 vdb-sql.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 May 20 03:16 vdb-unlock -> vdb-unlock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 May 20 03:16 vdb-unlock.3 -> vdb-unlock.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 91672 May 20 03:06 vdb-unlock.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 May 20 03:16 vdb-validate -> vdb-validate.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 May 20 03:16 vdb-validate.3 -> vdb-validate.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 288808 May 20 03:06 vdb-validate.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 abi-dump -> abi-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 abi-dump.3 -> abi-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 311192 Apr 17 22:59 abi-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 abi-load -> abi-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 abi-load.3 -> abi-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 866128 Apr 17 23:01 abi-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 align-cache -> align-cache.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:22 align-cache.3 -> align-cache.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 285320 Apr 17 23:00 align-cache.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:22 align-info -> align-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 align-info.3 -> align-info.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 112752 Apr 17 23:00 align-info.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 bam-load -> bam-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 bam-load.3 -> bam-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 14283088 Apr 17 23:04 bam-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 cache-mgr -> cache-mgr.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 cache-mgr.3 -> cache-mgr.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 132880 Apr 17 23:00 cache-mgr.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 ccextract -> ccextract.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 ccextract.3 -> ccextract.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 319096 Apr 17 23:00 ccextract.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:21 cg-load -> cg-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:21 cg-load.3 -> cg-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 692576 Apr 17 22:59 cg-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 check-corrupt -> check-corrupt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Apr 17 23:22 check-corrupt.3 -> check-corrupt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 294032 Apr 17 23:00 check-corrupt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 check-redact -> check-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 check-redact.3 -> check-redact.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 112672 Apr 17 23:00 check-redact.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 compute-coverage -> compute-coverage.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Apr 17 23:22 compute-coverage-ngs -> compute-coverage-ngs.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 26 Apr 17 23:22 compute-coverage-ngs.3 -> compute-coverage-ngs.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2316720 Apr 17 23:03 compute-coverage-ngs.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Apr 17 23:22 compute-coverage.3 -> compute-coverage.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 146144 Apr 17 23:00 compute-coverage.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:22 copycat -> copycat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 copycat.3 -> copycat.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 553328 Apr 17 23:00 copycat.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 crc32sum -> crc32sum.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 crc32sum.3 -> crc32sum.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 99496 Apr 17 23:00 crc32sum.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Apr 17 23:21 dump-blob-boundaries -> dump-blob-boundaries.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 26 Apr 17 23:21 dump-blob-boundaries.3 -> dump-blob-boundaries.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 87224 Apr 17 22:59 dump-blob-boundaries.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 dump-ref-fasta -> dump-ref-fasta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:22 dump-ref-fasta.3 -> dump-ref-fasta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2188608 Apr 17 23:03 dump-ref-fasta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 fastconv -> fastconv.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 fastconv.3 -> fastconv.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5172888 Apr 17 23:03 fastconv.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 fasterq-dump -> fasterq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 973104 Apr 17 23:00 fasterq-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:21 fasterq-dump.3 -> fasterq-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 fasterq-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:21 fastq-dump -> fastq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 370840 Apr 17 22:59 fastq-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 fastq-dump.3 -> fastq-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 fastq-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:21 fastq-load -> fastq-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 fastq-load.3 -> fastq-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 906160 Apr 17 23:01 fastq-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 general-loader -> general-loader.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:21 general-loader.3 -> general-loader.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1631520 Apr 17 23:01 general-loader.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 helicos-load -> helicos-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:21 helicos-load.3 -> helicos-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 840688 Apr 17 23:01 helicos-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:21 illumina-dump -> illumina-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Apr 17 23:21 illumina-dump.3 -> illumina-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 295952 Apr 17 22:59 illumina-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:21 illumina-load -> illumina-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Apr 17 23:21 illumina-load.3 -> illumina-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 872704 Apr 17 23:01 illumina-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 5 Apr 17 23:21 kar -> kar.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 6 Apr 17 23:21 kar+ -> kar+.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 kar+.3 -> kar+.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 283696 Apr 17 22:59 kar+.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 kar+meta -> kar+meta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 kar+meta.3 -> kar+meta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 163576 Apr 17 22:59 kar+meta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:21 kar.3 -> kar.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 244776 Apr 17 22:59 kar.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 kdb-index -> kdb-index.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 kdb-index.3 -> kdb-index.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 98128 Apr 17 23:00 kdb-index.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:22 kdbmeta -> kdbmeta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 kdbmeta.3 -> kdbmeta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 126408 Apr 17 22:59 kdbmeta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:21 latf-load -> latf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:21 latf-load.3 -> latf-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 561504 Apr 17 23:01 latf-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 make-read-filter -> make-read-filter.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Apr 17 23:22 make-read-filter.3 -> make-read-filter.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 224240 Apr 17 23:00 make-read-filter.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Apr 17 23:22 md5cp -> md5cp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 md5cp.3 -> md5cp.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 109456 Apr 17 23:00 md5cp.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 meta-cmp -> meta-cmp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 meta-cmp.3 -> meta-cmp.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 101352 Apr 17 23:00 meta-cmp.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 meta-copy -> meta-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 meta-copy.3 -> meta-copy.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 101328 Apr 17 23:00 meta-copy.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 meta-repair -> meta-repair.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:22 meta-repair.3 -> meta-repair.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 200928 Apr 17 23:00 meta-repair.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:22 ngs-pileup -> ngs-pileup.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 ngs-pileup.3 -> ngs-pileup.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2684832 Apr 17 23:02 ngs-pileup.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 pacbio-correct -> pacbio-correct.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:22 pacbio-correct.3 -> pacbio-correct.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 95200 Apr 17 23:00 pacbio-correct.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:21 pacbio-load -> pacbio-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:21 pacbio-load.3 -> pacbio-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 540128 Apr 17 22:59 pacbio-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 pacbio-loadxml -> pacbio-loadxml.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:21 pacbio-loadxml.3 -> pacbio-loadxml.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 827816 Apr 17 23:01 pacbio-loadxml.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 pileup-stats -> pileup-stats.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 pileup-stats.3 -> pileup-stats.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2878752 Apr 17 23:03 pileup-stats.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 prefetch -> prefetch.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 524064 Apr 17 22:59 prefetch-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 prefetch.3 -> prefetch.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 prefetch.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:22 rcexplain -> rcexplain.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 rcexplain.3 -> rcexplain.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 90840 Apr 17 22:59 rcexplain.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:22 read-filter-redact -> read-filter-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Apr 17 23:22 read-filter-redact.3 -> read-filter-redact.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 123296 Apr 17 23:00 read-filter-redact.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 ref-variation -> ref-variation.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Apr 17 23:22 ref-variation.3 -> ref-variation.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 3035216 Apr 17 23:03 ref-variation.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 rowwritetest -> rowwritetest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 rowwritetest.3 -> rowwritetest.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 108288 Apr 17 23:00 rowwritetest.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 sam-dump -> sam-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 889248 Apr 17 23:00 sam-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sam-dump.3 -> sam-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sam-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:21 samview -> samview.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 samview-util -> samview-util.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 samview-util.3 -> samview-util.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 87576 Apr 17 23:00 samview-util.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:21 samview.3 -> samview.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 304448 Apr 17 22:59 samview.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 schema-replace -> schema-replace.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Apr 17 23:22 schema-replace.3 -> schema-replace.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 102136 Apr 17 23:00 schema-replace.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 sff-dump -> sff-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sff-dump.3 -> sff-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 283376 Apr 17 22:59 sff-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 sff-load -> sff-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sff-load.3 -> sff-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 872208 Apr 17 23:01 sff-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Apr 17 23:21 sharq -> sharq.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Apr 17 23:21 sharq.3 -> sharq.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 44803576 Apr 17 23:10 sharq.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 sortreadtest -> sortreadtest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 sortreadtest.3 -> sortreadtest.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 99024 Apr 17 23:00 sortreadtest.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 sra-info -> sra-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 sra-info.3 -> sra-info.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2767800 Apr 17 23:00 sra-info.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:21 sra-pileup -> sra-pileup.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 458680 Apr 17 23:00 sra-pileup-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 sra-pileup.3 -> sra-pileup.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sra-pileup.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:22 sra-search -> sra-search.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 sra-search.3 -> sra-search.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 4307120 Apr 17 23:03 sra-search.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 sra-sort -> sra-sort.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:21 sra-sort-cg -> sra-sort-cg.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:21 sra-sort-cg.3 -> sra-sort-cg.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 851616 Apr 17 23:00 sra-sort-cg.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 sra-sort.3 -> sra-sort.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 851648 Apr 17 22:59 sra-sort.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 sra-stat -> sra-stat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 sra-stat.3 -> sra-stat.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 354352 Apr 17 23:00 sra-stat.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:22 srapath -> srapath.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 296360 Apr 17 23:00 srapath-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 srapath.3 -> srapath.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 srapath.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 sratools -> sratools.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 sratools.3 -> sratools.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5396912 Apr 17 23:00 sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 srf-load -> srf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 srf-load.3 -> srf-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1016896 Apr 17 23:01 srf-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Apr 17 23:22 test-download -> test-download.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Apr 17 23:22 test-download.3 -> test-download.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 108952 Apr 17 23:00 test-download.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Apr 17 23:22 test-read-write-cursor -> test-read-write-cursor.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 28 Apr 17 23:22 test-read-write-cursor.3 -> test-read-write-cursor.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 94864 Apr 17 23:00 test-read-write-cursor.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 test-sra -> test-sra.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 test-sra.3 -> test-sra.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 354608 Apr 17 23:00 test-sra.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 8 Apr 17 23:22 testld -> testld.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:22 testld.3 -> testld.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 95888 Apr 17 23:00 testld.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:22 txt2kdb -> txt2kdb.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 txt2kdb.3 -> txt2kdb.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 102320 Apr 17 23:00 txt2kdb.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:22 var-expand -> var-expand.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:22 var-expand.3 -> var-expand.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2117704 Apr 17 23:03 var-expand.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:21 vdb-config -> vdb-config.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 vdb-config.3 -> vdb-config.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2683928 Apr 17 23:02 vdb-config.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 vdb-copy -> vdb-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 vdb-copy.3 -> vdb-copy.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 356728 Apr 17 23:00 vdb-copy.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 vdb-decrypt -> vdb-decrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:22 vdb-decrypt.3 -> vdb-decrypt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 194312 Apr 17 22:59 vdb-decrypt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 vdb-diff -> vdb-diff.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 vdb-diff.3 -> vdb-diff.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 225368 Apr 17 23:00 vdb-diff.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:22 vdb-dump -> vdb-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 936760 Apr 17 23:00 vdb-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 vdb-dump.3 -> vdb-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 vdb-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 vdb-encrypt -> vdb-encrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Apr 17 23:22 vdb-encrypt.3 -> vdb-encrypt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 127320 Apr 17 22:59 vdb-encrypt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Apr 17 23:21 vdb-lock -> vdb-lock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:21 vdb-lock.3 -> vdb-lock.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 91648 Apr 17 22:59 vdb-lock.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Apr 17 23:22 vdb-sql -> vdb-sql.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Apr 17 23:22 vdb-sql.3 -> vdb-sql.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5426240 Apr 17 23:03 vdb-sql.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Apr 17 23:21 vdb-unlock -> vdb-unlock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Apr 17 23:21 vdb-unlock.3 -> vdb-unlock.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 91672 Apr 17 22:59 vdb-unlock.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Apr 17 23:22 vdb-validate -> vdb-validate.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Apr 17 23:22 vdb-validate.3 -> vdb-validate.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 288808 Apr 17 23:00 vdb-validate.3.2.1 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ @@ -13823,39 +13842,39 @@ diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: symbol KClientHttpRequestGET used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KNamelistCount used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcSelfNull used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KDBManagerMakeRead used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorIdRange used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcColumnEmpty used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VDatabaseAddRef used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KRsrcGlobalWhack used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol string_match used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KDataBufferResize used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: 133 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged +dpkg-shlibdeps: warning: symbol ctx_clear used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KNSManagerSetUserAgent used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KVectorGetFirstBool used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol VCursorFindNextRowIdDirect used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KStreamRead used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcStringNotFound used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol VDatabaseOpenMetadataRead used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KClientHttpResultGetInputStream used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol PageMapNewIterator used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcCursorOpenFailed used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: 133 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: Depends field of package libngs-jni: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libncbi-ngs-dev: substitution variable ${devlibs:Depends} unused, but is defined +dpkg-gencontrol: warning: Depends field of package libngs-jni: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake +dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_3.2.1+dfsg-4_arm64.deb'. dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_3.2.1+dfsg-4_arm64.deb'. -dpkg-deb: building package 'libngs-jni' in '../libngs-jni_3.2.1+dfsg-4_arm64.deb'. dpkg-deb: building package 'libncbi-ngs-dev' in '../libncbi-ngs-dev_3.2.1+dfsg-4_arm64.deb'. -dpkg-deb: building package 'python3-ngs' in '../python3-ngs_3.2.1+dfsg-4_all.deb'. -dpkg-deb: building package 'libncbi-ngs3-dbgsym' in '../libncbi-ngs3-dbgsym_3.2.1+dfsg-4_arm64.deb'. dpkg-deb: building package 'libngs-c++3' in '../libngs-c++3_3.2.1+dfsg-4_arm64.deb'. dpkg-deb: building package 'libngs-c++3-dbgsym' in '../libngs-c++3-dbgsym_3.2.1+dfsg-4_arm64.deb'. -dpkg-deb: building package 'libncbi-ngs3' in '../libncbi-ngs3_3.2.1+dfsg-4_arm64.deb'. +dpkg-deb: building package 'libngs-java' in '../libngs-java_3.2.1+dfsg-4_arm64.deb'. +dpkg-deb: building package 'libngs-jni' in '../libngs-jni_3.2.1+dfsg-4_arm64.deb'. dpkg-deb: building package 'libngs-c++-dev' in '../libngs-c++-dev_3.2.1+dfsg-4_arm64.deb'. +dpkg-deb: building package 'libncbi-ngs3' in '../libncbi-ngs3_3.2.1+dfsg-4_arm64.deb'. +dpkg-deb: building package 'libncbi-ngs3-dbgsym' in '../libncbi-ngs3-dbgsym_3.2.1+dfsg-4_arm64.deb'. +dpkg-deb: building package 'python3-ngs' in '../python3-ngs_3.2.1+dfsg-4_all.deb'. dpkg-deb: building package 'libngs-java-doc' in '../libngs-java-doc_3.2.1+dfsg-4_all.deb'. -dpkg-deb: building package 'libngs-java' in '../libngs-java_3.2.1+dfsg-4_arm64.deb'. -dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_3.2.1+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sra-sdk_3.2.1+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../sra-sdk_3.2.1+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -13863,12 +13882,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1550631/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3233477 and its subdirectories -I: Current time: Wed May 20 03:17:56 -12 2026 -I: pbuilder-time-stamp: 1779290276 +I: removing directory /srv/workspace/pbuilder/1550631 and its subdirectories +I: Current time: Thu Apr 17 23:25:07 +14 2025 +I: pbuilder-time-stamp: 1744881907