Diff of the two buildlogs:

--
--- b1/build.log	2025-10-23 18:27:23.626977885 +0000
+++ b2/build.log	2025-10-23 18:45:20.092028312 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Thu Oct 23 06:21:43 -12 2025
-I: pbuilder-time-stamp: 1761243703
+I: Current time: Thu Nov 26 14:50:36 +14 2026
+I: pbuilder-time-stamp: 1795654236
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -27,53 +27,85 @@
 dpkg-source: info: applying fix-resources-directory.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/70515/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink03-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Nov 26 00:50 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='arm64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+  BASH_VERSION='5.3.3(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=arm64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='arm64'
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=aarch64
+  HOST_ARCH=arm64
   IFS=' 	
   '
-  INVOCATION_ID='f91751191f734a69bcaa5881db01ef9c'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='70515'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=856c514c97f44ad2b9a6bcc9b2e99890
+  LANG=C
+  LANGUAGE=nl_BE:nl
+  LC_ALL=C
+  MACHTYPE=aarch64-unknown-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2399832
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UyhfOw0M/pbuilderrc_tQQL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UyhfOw0M/b1 --logfile b1/build.log toppic_1.7.10+cleaned1-1.dsc'
-  SUDO_GID='109'
-  SUDO_HOME='/var/lib/jenkins'
-  SUDO_UID='104'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://192.168.101.4:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UyhfOw0M/pbuilderrc_AyJr --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UyhfOw0M/b2 --logfile b2/build.log toppic_1.7.10+cleaned1-1.dsc'
+  SUDO_GID=109
+  SUDO_HOME=/var/lib/jenkins
+  SUDO_UID=104
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://192.168.101.4:3128
 I: uname -a
-  Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux
+  Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/70515/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Aug 10  2025 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -432,7 +464,7 @@
 Get: 279 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev-tools arm64 5.15.17+dfsg-4 [712 kB]
 Get: 280 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev arm64 5.15.17+dfsg-4 [1122 kB]
 Get: 281 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB]
-Fetched 182 MB in 2s (109 MB/s)
+Fetched 182 MB in 3s (70.3 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libexpat1:arm64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19962 files and directories currently installed.)
@@ -1355,8 +1387,8 @@
 Setting up tzdata (2025b-5) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Thu Oct 23 18:22:19 UTC 2025.
-Universal Time is now:  Thu Oct 23 18:22:19 UTC 2025.
+Local time is now:      Thu Nov 26 00:53:48 UTC 2026.
+Universal Time is now:  Thu Nov 26 00:53:48 UTC 2026.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libxcb-present0:arm64 (1.17.0-2+b1) ...
@@ -1589,7 +1621,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/toppic-1.7.10+cleaned1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../toppic_1.7.10+cleaned1-1_source.changes
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/toppic-1.7.10+cleaned1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../toppic_1.7.10+cleaned1-1_source.changes
 dpkg-buildpackage: info: source package toppic
 dpkg-buildpackage: info: source version 1.7.10+cleaned1-1
 dpkg-buildpackage: info: source distribution unstable
@@ -1687,7 +1723,7 @@
 -- Checking for one of the modules 'protobuf'
 -- Found Protobuf: /usr/lib/aarch64-linux-gnu/libprotobuf.so (found version "3.21.12")
 -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=$ORIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX
--- Configuring done (1.5s)
+-- Configuring done (1.8s)
 -- Generating done (0.4s)
 CMake Warning:
   Manually-specified variables were not used by the project:
@@ -1711,204 +1747,216 @@
 make  -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend
 make  -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make  -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make  -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend
+make  -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make  -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend
 make  -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color="
+make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build
-make  -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'.
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'.
+make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build
-make  -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build
+make  -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build
-[  0%] Built target topdiff_autogen_timestamp_deps
 make  -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build
+make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'.
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'.
+make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'.
+make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build
+make  -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'.
+make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'.
+make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'.
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build
+[  0%] Built target topmg_autogen_timestamp_deps
+[  0%] Built target topfd_autogen_timestamp_deps
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'.
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build
+[  0%] Built target topdiff_autogen_timestamp_deps
+make  -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend
+[  0%] Built target topindex_autogen_timestamp_deps
+[  0%] Built target topfd_gui_autogen_timestamp_deps
+make  -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend
 make  -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'.
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color="
+[  0%] Built target toppic_autogen_timestamp_deps
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color="
-[  0%] Built target toppic_autogen_timestamp_deps
+make  -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend
+make  -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make  -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend
-[  0%] Built target topfd_autogen_timestamp_deps
-[  0%] Built target topmg_gui_autogen_timestamp_deps
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend
-make  -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend
+[  0%] Built target topindex_gui_autogen_timestamp_deps
+make  -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend
 [  0%] Built target topdiff_gui_autogen_timestamp_deps
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color="
+[  0%] Built target toppic_gui_autogen_timestamp_deps
 make  -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color="
-[  0%] Built target topindex_gui_autogen_timestamp_deps
-[  0%] Built target toppic_gui_autogen_timestamp_deps
-[  0%] Built target topindex_autogen_timestamp_deps
-[  0%] Built target topmg_autogen_timestamp_deps
-make  -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color="
 make  -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend
-[  0%] Built target topfd_gui_autogen_timestamp_deps
-make  -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color="
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color="
+make  -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color="
+[  0%] Built target topmg_gui_autogen_timestamp_deps
+make  -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build
-make  -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build
-make  -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build
-make  -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build
+make  -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build
+make  -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make  -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build
+make  -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[  0%] Automatic MOC and UIC for target topdiff_gui
+make  -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build
+[  0%] Automatic MOC and UIC for target topfd
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-make  -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build
-[  0%] Automatic MOC and UIC for target topmg_gui
-[  0%] Automatic MOC and UIC for target topdiff
+make  -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build
+[  0%] Automatic MOC and UIC for target topmg
 [  0%] Automatic MOC and UIC for target toppic
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release
-[  1%] Automatic MOC and UIC for target toppic_gui
+[  0%] Automatic MOC and UIC for target topindex
 /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release
-[  1%] Automatic MOC and UIC for target topindex_gui
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release
-[  1%] Automatic MOC and UIC for target topfd_gui
-[  1%] Automatic MOC and UIC for target topfd
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build
+[  0%] Automatic MOC and UIC for target topdiff
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release
+[  0%] Automatic MOC and UIC for target topindex_gui
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release
+[  0%] Automatic MOC and UIC for target topdiff_gui
+[  0%] Automatic MOC and UIC for target topfd_gui
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release
 /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release
-[  1%] Automatic MOC and UIC for target topindex
 AutoGen: Refreshing parse cache because it doesn't exist.
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
-[  1%] Automatic MOC and UIC for target topmg
-/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
 AutoGen: Refreshing parse cache because it doesn't exist.
 AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist.
 /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/onnxruntime -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
+AutoGen: Refreshing parse cache because it doesn't exist.
 AutoGen: Refreshing parse cache because it doesn't exist.
 AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist.
 /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
-AutoGen: Refreshing parse cache because it doesn't exist.
 AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist.
 /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
+AutoGen: Refreshing parse cache because it doesn't exist.
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
+AutoGen: Refreshing parse cache because it doesn't exist.
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
+[  1%] Automatic MOC and UIC for target toppic_gui
+[  1%] Automatic MOC and UIC for target topmg_gui
+AutoGen: Refreshing parse cache because it doesn't exist.
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release
+/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release
+AutoGen: Refreshing parse cache because it doesn't exist.
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
+AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
+AutoGen: Refreshing parse cache because it doesn't exist.
+AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
@@ -1920,1796 +1968,1525 @@
 AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Refreshing parse cache because it doesn't exist.
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist.
+/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
+AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
+AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
-AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
-AutoGen: Parsing "SRC:/src/console/console_util.hpp"
-AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp"
-AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/command.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp"
-AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
-AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/base_data.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion.cpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/residue.cpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp"
+AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
+AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
-AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
-AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/time_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp"
+AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
-AutoGen: Parsing "SRC:/src/console/console_util.cpp"
-AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
-AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp"
-AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp"
-AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
-AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp"
-AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/command.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp"
-AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
-AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/base_data.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp"
-AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp"
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.hpp"
-/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.hpp
-AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/time_util.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp"
-AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp"
-AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp"
-AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp"
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
-AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.hpp"
-/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.hpp
-AutoGen: Refreshing parse cache because it doesn't exist.
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist.
-/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/onnxruntime -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu
+AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
+AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
+AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
+AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
+AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
+AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
+AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
 AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp"
 AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
+AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
+AutoGen: Parsing "SRC:/src/console/topindex_process.hpp"
+AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
+AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.hpp"
 AutoGen: Parsing "SRC:/src/console/console_util.hpp"
-AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp"
-AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.hpp"
+AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
+AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
+AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
 AutoGen: Parsing "SRC:/src/gui/util/command.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp"
+AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/console/console_util.hpp"
+AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp"
+AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp"
+AutoGen: Parsing "SRC:/src/console/topmg_process.hpp"
 AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp"
+AutoGen: Parsing "SRC:/src/console/toppic_process.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.cpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.cpp"
-AutoGen: Parsing "SRC:/src/common/util/time_util.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp"
-AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp"
-AutoGen: Parsing "SRC:/src/console/console_util.cpp"
-AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp"
-AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp"
-AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
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+AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp"
+AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp"
 AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
-AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
+AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
-AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
-AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
+AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
 AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
 AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
+AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp"
-/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.hpp
+AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
+AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
+AutoGen: Parsing "SRC:/src/console/console_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
+AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
+AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
+AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
-AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
-AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp"
-AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
-AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp"
+AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp"
+AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp"
-AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
 AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp"
+AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
 AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp"
 AutoGen: Parsing "SRC:/src/common/util/time_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp"
+AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp"
+AutoGen: Parsing "SRC:/src/common/base/base_data.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp"
-AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp"
-AutoGen: Parsing "SRC:/src/console/topindex_process.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp"
-AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp"
-AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp"
-AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp"
-AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
-AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp"
-AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp"
-AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp"
-AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.hpp"
-/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.hpp
+AutoGen: Parsing "SRC:/src/common/base/ion.cpp"
+AutoGen: Parsing "SRC:/src/console/console_util.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
+AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp"
+AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
+AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
+AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.hpp"
+AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp"
+AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
+AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp"
-AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp"
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-AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp"
-AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp"
-AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp"
-AutoGen: Parsing "SRC:/src/para/sp_para.hpp"
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-AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp"
-AutoGen: Parsing "SRC:/src/seq/break_point.hpp"
-AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
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-AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
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-AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp"
-AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
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-AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp"
-AutoGen: Parsing "SRC:/src/seq/prot_score.hpp"
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-AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp"
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-AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp"
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-AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp"
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-AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.hpp"
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-AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
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-AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/env.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp"
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-AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp"
-AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
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-AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp"
-AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp"
-AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp"
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-AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp"
-AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp"
-AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp"
+AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.hpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.hpp"
+AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp"
+AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp"
+AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp"
+AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp"
+AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp"
+AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.hpp"
+/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.hpp
+AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp"
+/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.hpp
+AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp"
+AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp"
+AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.hpp"
+/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmgwindow.hpp
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.hpp"
+/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.hpp
+AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp"
+AutoGen: Parsing "SRC:/src/gui/util/command.cpp"
+AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp"
+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.hpp"
+/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.hpp
+AutoGen: Parsing "SRC:/src/console/topindex_process.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.hpp"
+AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp"
+AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp"
-/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/timestamp
 AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp"
 AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp"
 AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp"
 AutoGen: Parsing "SRC:/src/para/prsm_para.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp"
 AutoGen: Parsing "SRC:/src/para/sp_para.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp"
 AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp"
 AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp"
+AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp"
-AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp"
-AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms1_process.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp"
-AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp"
-AutoGen: Parsing "SRC:/src/common/base/activation.hpp"
-AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp"
 AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp"
-AutoGen: Parsing "SRC:/src/seq/alter.cpp"
-AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp"
-AutoGen: Parsing "SRC:/src/seq/alter_type.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp"
-AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms2_process.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_prec_win.hpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_single_sp.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_assign.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp"
-AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp"
-AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp"
-AutoGen: Parsing "SRC:/src/seq/break_point.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp"
-AutoGen: Parsing "SRC:/src/seq/db_block.cpp"
-AutoGen: Parsing "SRC:/src/common/base/base_data.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env.hpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env_util.hpp"
+AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp"
 AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp"
 AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp"
-AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp"
-AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp"
-AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod.hpp"
-AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp"
-AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp"
-AutoGen: Parsing "SRC:/src/seq/local_anno.cpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp"
-AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp"
-AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp"
-AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp"
-AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp"
-AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp"
-AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp"
-AutoGen: Parsing "SRC:/src/seq/prot_score.cpp"
-AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp"
-AutoGen: Parsing "SRC:/src/seq/proteoform.cpp"
-AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp"
-AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp"
-AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_align.hpp"
-AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_mng.hpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm.hpp"
-AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_processor.hpp"
-AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp"
-AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp"
-AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_slow_match.hpp"
-AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp"
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-AutoGen: Parsing "SRC:/src/common/base/residue.hpp"
-AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp"
-AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp"
-AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp"
 AutoGen: Parsing "SRC:/src/seq/alter.hpp"
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 AutoGen: Parsing "SRC:/src/seq/alter_type.hpp"
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 AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp"
 AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp"
-AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp"
-AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/break_point.hpp"
-AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/db_block.hpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp"
-AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp"
-AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/local_anno.hpp"
-AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp"
+AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp"
-AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/deps"
-AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp"
 AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp"
 AutoGen: Parsing "SRC:/src/seq/prot_score.hpp"
-AutoGen: Parsing "SRC:/src/common/util/file_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp"
-AutoGen: Parsing "SRC:/src/common/util/logger.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp"
-AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp"
 AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll.hpp"
 AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp"
-AutoGen: Parsing "SRC:/src/common/util/str_util.hpp"
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-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp"
-AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp"
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 AutoGen: Parsing "SRC:/src/common/base/activation.cpp"
 AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp"
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 AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp"
 AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp"
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 AutoGen: Parsing "SRC:/src/common/base/base_data.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion.cpp"
+AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
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 AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_assign.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp"
+AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp"
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-AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_detect.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp"
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 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
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 AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
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+AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp"
+AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp"
+AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp"
+AutoGen: Parsing "SRC:/src/console/topmg_process.cpp"
+AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_autogen/deps"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
+AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_align.hpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_mng.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp"
+AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_processor.hpp"
+AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_slow_match.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp"
+AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp"
+AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp"
+AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt"
+AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp"
+AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp"
+AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp"
 AutoGen: Parsing "SRC:/src/seq/alter.hpp"
 AutoGen: Parsing "SRC:/src/seq/alter_type.hpp"
 AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp"
 AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp"
 AutoGen: Parsing "SRC:/src/seq/break_point.hpp"
 AutoGen: Parsing "SRC:/src/seq/db_block.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp"
-AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp"
+AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/local_anno.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp"
 AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp"
 AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp"
 AutoGen: Parsing "SRC:/src/seq/prot_score.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp"
+AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp"
 AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp"
 AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp"
 AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
+AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp"
 AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp"
-AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp"
-AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp"
-AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp"
+AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp"
+AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp"
+AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp"
+AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
+AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
+AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp"
+AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
+AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp"
+AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.cpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
+AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp"
+AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp"
+/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/timestamp
 AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp"
 AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp"
 AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp"
-/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp
 AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp"
 AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp"
 AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp"
@@ -3725,9 +3502,9 @@
 AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod.cpp"
-/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/timestamp
 AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp"
 AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp"
@@ -3736,41 +3513,136 @@
 AutoGen: Parsing "SRC:/src/common/base/ptm.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp"
 AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp"
 AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp"
 AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp"
 AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
+AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp"
 AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp"
 AutoGen: Parsing "SRC:/src/common/util/str_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp"
 AutoGen: Parsing "SRC:/src/common/util/time_util.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp"
 AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/console/console_util.cpp"
-AutoGen: Parsing "SRC:/src/console/topmg.cpp"
-AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp"
-AutoGen: Parsing "SRC:/src/console/topmg_process.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/console/toppic.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.cpp"
+AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.cpp"
+AutoGen: Parsing "SRC:/src/console/toppic_process.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp"
 AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp"
 AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp"
 AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
 AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
 AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
 AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
 AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
 AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
 AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
 AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp"
 AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp"
 AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp"
@@ -3778,14 +3650,18 @@
 AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp"
 AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.cpp"
 AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
 AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp"
 AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp"
@@ -3793,22 +3669,28 @@
 AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp"
 AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp"
 AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp"
@@ -3818,8 +3700,10 @@
 AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp"
@@ -3827,19 +3711,29 @@
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
 AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
 AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
 AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
 AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
 AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp"
+AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp"
 AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp"
 AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm.cpp"
@@ -3847,332 +3741,461 @@
 AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp"
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp"
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp"
-AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp"
+AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp"
+AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
+AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
+AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp"
+AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
+AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
+AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp"
+AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms1_process.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms2_process.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_prec_win.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp"
+AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_single_sp.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_assign.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp"
+AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp"
 AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp"
+AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp"
+[  1%] Built target topindex_autogen
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env_util.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp"
 AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll.cpp"
 AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp"
+make  -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend
 AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_assign.cpp"
+AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_detect.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp"
+AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp"
+AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp"
+AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp"
+AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp"
 AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp"
 AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp"
 AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_util.cpp"
+make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/DependInfo.cmake "--color="
 AutoGen: Parsing "SRC:/src/search/graph/dist.cpp"
 AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_writer.cpp"
 AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set.cpp"
 AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
 AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp"
 AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp"
-AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set_util.cpp"
 AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic_util.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/para/ecscore_para.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/score/comp_env_cnn_score.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp"
+AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp"
+AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp"
+AutoGen: Parsing "SRC:/src/seq/alter.cpp"
+AutoGen: Parsing "SRC:/src/seq/alter_type.cpp"
+AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp"
+AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp"
+AutoGen: Parsing "SRC:/src/seq/break_point.cpp"
+AutoGen: Parsing "SRC:/src/seq/db_block.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp"
 AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp"
-AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp"
-AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp"
+AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp"
+AutoGen: Parsing "SRC:/src/seq/local_anno.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/score/component_score.cpp"
+AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp"
+AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp"
+AutoGen: Parsing "SRC:/src/seq/prot_score.cpp"
+AutoGen: Parsing "SRC:/src/seq/proteoform.cpp"
+AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp"
+AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp"
+AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp"
+AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp"
+AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp"
+AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp"
+AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/deps"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore.cpp"
 AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp"
 AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp"
-AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore_writer.cpp"
+AutoGen: Parsing "SRC:/src/topfd/ecscore/score/onnx_ecscore.cpp"
+AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt"
+AutoGen: Parsing "SRC:/src/topfd/envcnn/onnx_env_cnn.cpp"
+AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt"
 AutoGen: Parsing "SRC:/src/seq/alter.cpp"
-AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.cpp"
 AutoGen: Parsing "SRC:/src/seq/alter_type.cpp"
 AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp"
 AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp"
-AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.cpp"
-AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.cpp"
 AutoGen: Parsing "SRC:/src/seq/break_point.cpp"
 AutoGen: Parsing "SRC:/src/seq/db_block.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp"
+AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp"
+AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_autogen/deps"
 AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp"
 AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
 AutoGen: Parsing "SRC:/src/seq/local_anno.cpp"
 AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
 AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
+AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt"
 AutoGen: Parsing "SRC:/src/seq/prot_score.cpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
+AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt"
 AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
 AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp"
 AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp"
 AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp"
 AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp"
 AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
+/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp
 AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
 AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp"
+/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/timestamp
 AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
-AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp"
-AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp"
+Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/compiler_depend.internal".
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp"
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp"
+Consolidate compiler generated dependencies of target topindex
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp"
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp"
 AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp"
-AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
 AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp"
-AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
 AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp"
-AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp"
-AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp"
-AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.cpp"
+AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp"
+AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp"
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 AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp"
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 AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_autogen/deps"
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 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[  1%] Built target topindex_autogen
-[  1%] Built target toppic_autogen
-make  -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend
-make  -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
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 make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[  1%] Built target topdiff_autogen
-make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
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 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
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-[  1%] Built target topmg_autogen
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 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
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 Consolidate compiler generated dependencies of target topdiff
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-[  1%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o
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 [  3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic.cpp
-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o
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-[  3%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o
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 /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.ui
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-[  3%] Built target topdiff_gui_autogen
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-[  3%] Built target topmg_gui_autogen
+AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt"
+AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt"
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+/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/timestamp
+[  3%] Built target topdiff_gui_autogen
 [  3%] Built target topindex_gui_autogen
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 [  3%] Built target topfd_gui_autogen
-[  3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o
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-[  3%] Building CXX object CMakeFiles/topmg.dir/src/console/console_util.cpp.o
-[  3%] Building CXX object CMakeFiles/toppic.dir/src/console/console_util.cpp.o
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-[  3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o
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-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
-   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
-[  3%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o
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-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o
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-[  3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data.cpp.o
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 /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/icon.qrc
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 Dependencies file "topdiff_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui.dir/compiler_depend.internal".
 Consolidate compiler generated dependencies of target topdiff_gui
@@ -4181,45 +4204,6 @@
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-[  3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation.cpp
-[  3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o
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-[  3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o
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-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation.cpp
-In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
-                 from /usr/include/c++/15/string:53,
-                 from /usr/include/c++/15/bits/locale_classes.h:42,
-                 from /usr/include/c++/15/bits/ios_base.h:43,
-                 from /usr/include/c++/15/ios:46,
-                 from /usr/include/c++/15/bits/ostream.h:43,
-                 from /usr/include/c++/15/ostream:42,
-                 from /usr/include/c++/15/iostream:43,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/common/topfd_process.cpp:16:
-/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
-   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
-      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1164 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[  3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o
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-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o
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-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o
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-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_data_util.cpp
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-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topmg_process.cpp
-[  3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_process.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topmg_process.cpp:26:
@@ -4227,17 +4211,20 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[  3%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o
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+[  3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o
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+[  3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o
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+[  3%] Building CXX object CMakeFiles/toppic.dir/src/console/console_util.cpp.o
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+[  3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o
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 make  -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 [  3%] Automatic RCC for src/gui/topfd/icon.qrc
 /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_process.cpp:29:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 AutoRcc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc"
 /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/icon.qrc
 AutoRcc: Writing settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt"
@@ -4249,20 +4236,31 @@
 make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 [  3%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp
-[  3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiff_gui.cpp
-[  3%] Building CXX object CMakeFiles/topmg.dir/src/common/base/activation.cpp.o
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-[  3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o
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+[  3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_process.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_process.cpp:29:
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+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
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-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_ms2_process.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_ms2_process.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_ms2_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms2_process.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms1_process.cpp:24:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
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-[  3%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o
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-[  3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation_base.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms2_process.cpp:24:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
-   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
-[  3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/base_data.cpp.o
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod.cpp
+[  6%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type_base.cpp
 In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
                  from /usr/include/c++/15/string:53,
                  from /usr/include/c++/15/bits/locale_classes.h:42,
@@ -4328,7 +4367,7 @@
                  from /usr/include/c++/15/ostream:42,
                  from /usr/include/c++/15/iostream:43,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms1_process.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/common/topfd_process.cpp:16:
 /usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
 /usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
    34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
@@ -4336,27 +4375,97 @@
 /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1164 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[  4%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.cpp
-[  4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o
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-[  4%] Building CXX object CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o
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-[  4%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o
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+[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod_base.cpp.o
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms2_process.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
+   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms1_process.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
+   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
+[ 11%] Building CXX object CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o
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+[ 11%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type_base.cpp
+[ 11%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppic_gui.cpp
+[ 11%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion.cpp
 In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
                  from /usr/include/c++/15/string:53,
                  from /usr/include/c++/15/bits/locale_classes.h:42,
@@ -4366,7 +4475,7 @@
                  from /usr/include/c++/15/ostream:42,
                  from /usr/include/c++/15/iostream:43,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms2_process.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms1_process.cpp:16:
 /usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
 /usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
    34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
@@ -4374,526 +4483,593 @@
 /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1164 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[  4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type_base.cpp
-[  4%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_prec_win.cpp.o
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-[  4%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion.cpp.o
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-[  4%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o
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-[  4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o
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-[  9%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o
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-[  9%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type.cpp
-[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o
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-[ 10%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o
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-[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid_base.cpp
-[ 10%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/neutral_loss_base.cpp
-[ 10%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o
+[ 11%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_prec_win.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_prec_win.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_prec_win.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_prec_win.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_prec_win.cpp
+In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
+                 from /usr/include/c++/15/string:53,
+                 from /usr/include/c++/15/bits/locale_classes.h:42,
+                 from /usr/include/c++/15/bits/ios_base.h:43,
+                 from /usr/include/c++/15/ios:46,
+                 from /usr/include/c++/15/bits/ostream.h:43,
+                 from /usr/include/c++/15/ostream:42,
+                 from /usr/include/c++/15/iostream:43,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/deconv/deconv_ms2_process.cpp:15:
+/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
+   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
+      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1164 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
+[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o
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+[ 11%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o
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+[ 11%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o
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-[ 10%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o
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-[ 11%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion.cpp.o
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-[ 11%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o
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-[ 12%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o
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-[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o
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-[ 12%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion_type.cpp.o
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-[ 12%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/prot_mod.cpp.o
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-[ 12%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o
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-[ 12%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/prot_mod_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o
+[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o
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-[ 13%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion_type_base.cpp.o
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-[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o
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-[ 14%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ptm.cpp.o
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-[ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/amino_acid_base.cpp.o
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-[ 14%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o
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-[ 14%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o
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-[ 14%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod_base.cpp.o
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-[ 16%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o
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-[ 17%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/residue_util.cpp.o
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-[ 18%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o
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-[ 18%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o
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-[ 18%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env/ms_map_env_util.cpp.o
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-[ 18%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o
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-[ 18%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod_util.cpp.o
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-[ 21%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o
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-[ 21%] Building CXX object CMakeFiles/toppic.dir/src/common/base/residue.cpp.o
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-[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o
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-   46 |     std::pair<double, double> error_weight = env_set->getMzErrorAndWeight();
-      |                                                                           ^
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-[ 25%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_assign.cpp.o
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-[ 25%] Building CXX object CMakeFiles/topindex.dir/src/common/util/logger.cpp.o
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-[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o
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-[ 25%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o
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-[ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc.cpp.o
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-[ 27%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o
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+[ 26%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o
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+[ 27%] Building CXX object CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o
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-[ 27%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o
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-[ 27%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o
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-[ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o
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-[ 27%] Building CXX object CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o
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-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_coll/env_coll_detect.cpp:24:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
-   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
-[ 27%] Building CXX object CMakeFiles/toppic.dir/src/common/thread/simple_thread_pool.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/time_util.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_util.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o
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-[ 29%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_err_handler.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o
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+   46 |     std::pair<double, double> error_weight = env_set->getMzErrorAndWeight();
+      |                                                                           ^
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+[ 32%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o
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+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
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 In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
                  from /usr/include/c++/15/string:53,
                  from /usr/include/c++/15/bits/locale_classes.h:42,
@@ -4910,248 +5086,107 @@
 /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1164 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[ 29%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_parser.cpp.o
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-[ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o
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-[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o
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-[ 30%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o
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-[ 31%] Building CXX object CMakeFiles/topindex.dir/src/seq/alter.cpp.o
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-[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o
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-[ 32%] Building CXX object CMakeFiles/topindex.dir/src/seq/alter_type.cpp.o
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-[ 32%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set.cpp.o
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 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 33%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/seq/alter.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o
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-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'void toppic::EnvSet::removePeakData(toppic::MsMapPtr)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:143:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
-  143 |     if (peak_num != theo_env_peak_intes.size()) {
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'std::pair<double, double> toppic::EnvSet::getMzErrorAndWeight()':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:189:55: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
-  189 | std::pair<double, double> EnvSet::getMzErrorAndWeight() {
-      |                                                       ^
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'bool toppic::EnvSet::containValidEnvs(int, int)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:304:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::shared_ptr<toppic::MsMapEnv> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
-  304 |     if (seed_spec_idx < 0 || seed_spec_idx >= ms_map_env_list_.size()) {
-      |                              ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
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-[ 33%] Building CXX object CMakeFiles/topindex.dir/src/seq/db_block.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
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-[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/seq/amino_acid_replace.cpp.o
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+[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 33%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o
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-[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o
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-[ 34%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o
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-[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o
+[ 38%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o
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+[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/bp_spec.cpp
-[ 34%] Building CXX object CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp
-[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/residue_util.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 35%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp
-[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o
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-[ 36%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o
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-[ 36%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
-[ 36%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o
+[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/support_peak_type.cpp
-[ 37%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o
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-[ 37%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o
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-[ 37%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o
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-[ 37%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o
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-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o
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+[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o
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+[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o
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+[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/support_peak_type_base.cpp
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-[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o
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-[ 37%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/command.cpp.o
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 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
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-[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o
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-[ 38%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o
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+[ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
@@ -5159,172 +5194,122 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
+[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 38%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
-[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp
+[ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp
+[ 39%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc.cpp
-[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o
+[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp
+[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/bp_spec.cpp
+[ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc_base.cpp
-[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc_util.cpp
-[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp
-[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp
-[ 38%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter_type.cpp
-[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o
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-[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o
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-[ 38%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/component_score.cpp.o
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-[ 39%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
-[ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/file_util.cpp
+[ 39%] Building CXX object CMakeFiles/topmg.dir/src/seq/break_point.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/break_point.cpp
+[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp
+[ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 39%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o
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-[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o
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-[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp
+[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o
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+[ 39%] Building CXX object CMakeFiles/topmg.dir/src/seq/db_block.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/db_block.cpp
+[ 39%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp
+[ 39%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_coll/env_coll_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15:
+[ 39%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp
-[ 39%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o
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-[ 39%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o
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-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  186 |   fai_build(db_file_name.c_str());
-      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  235 |     fai_build(new_db_file_name.c_str());
-      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o
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-[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o
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-[ 40%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o
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-[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o
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-[ 40%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore.cpp.o
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-[ 40%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o
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-[ 40%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o
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-[ 40%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o
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-[ 40%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o
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-[ 41%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o
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-[ 41%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o
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+[ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o
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-[ 42%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o
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-[ 42%] Linking CXX executable bin/topdiff_gui
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-[ 42%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o
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-[ 42%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o
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-[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o
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-[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o
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-[ 42%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter.cpp.o
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+[ 39%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o
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+[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/break_point.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 42%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp
-[ 42%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp
-[ 42%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter_type.cpp
-[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp
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-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[ 43%] Built target topdiff_gui
-[ 43%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o
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-[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o
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+[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/db_block.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'void toppic::EnvSet::removePeakData(toppic::MsMapPtr)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:143:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
+  143 |     if (peak_num != theo_env_peak_intes.size()) {
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'std::pair<double, double> toppic::EnvSet::getMzErrorAndWeight()':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:189:55: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+  189 | std::pair<double, double> EnvSet::getMzErrorAndWeight() {
+      |                                                       ^
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'bool toppic::EnvSet::containValidEnvs(int, int)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:304:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::shared_ptr<toppic::MsMapEnv> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
+  304 |     if (seed_spec_idx < 0 || seed_spec_idx >= ms_map_env_list_.size()) {
+      |                              ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 40%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp
-[ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
-[ 44%] Building CXX object CMakeFiles/topfd.dir/src/topfd/envcnn/onnx_env_cnn.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/envcnn/onnx_env_cnn.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/envcnn/onnx_env_cnn.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/envcnn/onnx_env_cnn.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/envcnn/onnx_env_cnn.cpp
-[ 44%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
@@ -5332,40 +5317,29 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 40%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp
+[ 40%] Linking CXX executable bin/topdiff_gui
+/usr/bin/cmake -E cmake_link_script CMakeFiles/topdiff_gui.dir/link.txt --verbose=1
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp
-[ 44%] Linking CXX executable bin/topfd_gui
-/usr/bin/cmake -E cmake_link_script CMakeFiles/topfd_gui.dir/link.txt --verbose=1
-[ 44%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation.cpp
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  186 |   fai_build(db_file_name.c_str());
-      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  235 |     fai_build(new_db_file_name.c_str());
-      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp
-[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o
+[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp
+[ 41%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp
+[ 41%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15:
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 44%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o
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-[ 44%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
@@ -5373,101 +5347,84 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp
-[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o
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-[ 44%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp
-[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o
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+[ 41%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o
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+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp
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-[ 44%] Built target topfd_gui
-[ 44%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o
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-[ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o
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-[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/break_point.cpp.o
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-[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o
+[ 42%] Built target topdiff_gui
+[ 42%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp
-[ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
+[ 42%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o
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+[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o
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-[ 44%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid.cpp
-[ 44%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp
-[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 45%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp
-[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp
-[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp
-[ 45%] Building CXX object CMakeFiles/topmg.dir/src/seq/db_block.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/db_block.cpp
-[ 45%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/util/command.cpp.o
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-[ 45%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid_base.cpp
-[ 46%] Building CXX object CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o
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-[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
-[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp
+[ 43%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o
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+[ 42%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/seq/prot_score.cpp.o
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-[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp
+[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o
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+[ 43%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set_util.cpp.o
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+[ 44%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o
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-[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o
-[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
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-[ 46%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion.cpp
+[ 44%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp
+[ 44%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
+[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
+[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
@@ -5476,38 +5433,50 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/util/gui_message.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp
-[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp
-[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o
+[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp
-[ 46%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type.cpp
-[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o
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-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp
+[ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o
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+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  186 |   fai_build(db_file_name.c_str());
+      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  235 |     fai_build(new_db_file_name.c_str());
+      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.cpp
+[ 44%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp
+[ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp
+[ 45%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp
+[ 45%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  186 |   fai_build(db_file_name.c_str());
+      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  235 |     fai_build(new_db_file_name.c_str());
+      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 45%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
@@ -5515,26 +5484,63 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
-[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp
-[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp
+[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
+[ 45%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  186 |   fai_build(db_file_name.c_str());
+      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+  235 |     fai_build(new_db_file_name.c_str());
+      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 45%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic_util.cpp
+[ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp
+[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp
+[ 45%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+[ 46%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/para/ecscore_para.cpp.o
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/para/ecscore_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/para/ecscore_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/para/ecscore_para.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/para/ecscore_para.cpp
+[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp
+[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp
+[ 46%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp
+[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o
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+[ 46%] Linking CXX executable bin/topfd_gui
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+[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 46%] Linking CXX executable bin/topindex_gui
+/usr/bin/cmake -E cmake_link_script CMakeFiles/topindex_gui.dir/link.txt --verbose=1
+[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o
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 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   186 |   fai_build(db_file_name.c_str());
@@ -5543,114 +5549,80 @@
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   235 |     fai_build(new_db_file_name.c_str());
       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 46%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o
-[ 46%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o
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 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o
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-[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp
-[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
-[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp
-[ 46%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod.cpp
-[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 47%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/residue_seq.cpp
-[ 47%] Building CXX object CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp
-[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp
-[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o
-[ 47%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod_base.cpp
-[ 47%] Linking CXX executable bin/topindex_gui
-/usr/bin/cmake -E cmake_link_script CMakeFiles/topindex_gui.dir/link.txt --verbose=1
-[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp
-[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o
+[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp
+[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/prot_candidate.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topmg.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp
+[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 47%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o
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-[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o
+[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp
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-[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o
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-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
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-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  186 |   fai_build(db_file_name.c_str());
-      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
-  235 |     fai_build(new_db_file_name.c_str());
-      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
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-[ 48%] Building CXX object CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o
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-[ 49%] Building CXX object CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o
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-[ 49%] Building CXX object CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o
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-[ 49%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o
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 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
@@ -5659,12 +5631,30 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 49%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/prot_mod.cpp
-[ 49%] Building CXX object CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o
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-[ 50%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp
+[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/score/ecscore_writer.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o
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+[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o
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+[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30:
@@ -5672,22 +5662,27 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 50%] Building CXX object CMakeFiles/topindex.dir/src/para/sp_para.cpp.o
-[ 50%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o
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 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp
-[ 51%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/prot_mod_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
@@ -5702,21 +5697,31 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o
+[ 48%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp
+[ 48%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 48%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o
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 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
@@ -5725,31 +5730,68 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
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 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 52%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o
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+[ 52%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o
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+[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/para/sp_para.cpp
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o
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+[ 52%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
@@ -5758,19 +5800,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
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-[ 52%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
@@ -5779,16 +5808,29 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
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 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18,
@@ -5797,128 +5839,152 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 52%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_base.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o
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-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 52%] Building CXX object CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o
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-[ 52%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o
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+[ 57%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/match_env_util.cpp
+In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
+                 from /usr/include/c++/15/algorithm:62,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
+/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:84:39:   required from here
+   84 |     mass_tole_list[j] = std::make_pair(extend_ms_ptr->getPeakPtr(j)->getMonoMass(),
+      |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+   85 |                                        extend_ms_ptr->getPeakPtr(j)->getOrigTolerance());
+      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1164 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
+[ 57%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o
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-[ 57%] Building CXX object CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o
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-[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o
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+[ 58%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o
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 In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
                  from /usr/include/c++/15/algorithm:62,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
@@ -5931,45 +5997,37 @@
 /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1164 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[ 57%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o
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-[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o
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-[ 57%] Building CXX object CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o
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-[ 57%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o
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-[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o
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 In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
                  from /usr/include/c++/15/algorithm:62,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
@@ -5982,356 +6040,270 @@
 /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1164 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[ 61%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o
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-[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o
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-[ 62%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_reader.cpp
-[ 62%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/env_filter.cpp
-[ 62%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_writer.cpp
-In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
-                 from /usr/include/c++/15/algorithm:62,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
-/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:84:39:   required from here
-   84 |     mass_tole_list[j] = std::make_pair(extend_ms_ptr->getPeakPtr(j)->getMonoMass(),
-      |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-   85 |                                        extend_ms_ptr->getPeakPtr(j)->getOrigTolerance());
-      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1164 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/msmap/ms_map.cpp.o
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-[ 67%] Building CXX object CMakeFiles/topmg.dir/src/ms/msmap/ms_map.cpp.o
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-[ 67%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o
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-[ 67%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/prm_ms_factory.cpp
-[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o
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-[ 68%] Building CXX object CMakeFiles/topmg.dir/src/ms/msmap/ms_map_peak.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/msmap/ms_map_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/msmap/ms_map_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/msmap/ms_map_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_peak.cpp
-In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
-                 from /usr/include/c++/15/algorithm:62,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
-/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:84:39:   required from here
-   84 |     mass_tole_list[j] = std::make_pair(extend_ms_ptr->getPeakPtr(j)->getMonoMass(),
-      |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-   85 |                                        extend_ms_ptr->getPeakPtr(j)->getOrigTolerance());
-      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1164 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_reader.cpp.o
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-[ 68%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o
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-[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o
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-[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/baseline_util.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o
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-[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_writer.cpp.o
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-[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o
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-[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o
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-[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o
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-[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o
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-[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/support_peak.cpp.o
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-[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/theo_peak.cpp.o
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-[ 74%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o
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-[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
@@ -6340,8 +6312,14 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp
+[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp
+[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
@@ -6350,59 +6328,34 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 74%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o
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-[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o
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-[ 74%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o
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-[ 74%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o
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-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_util.cpp
-[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp
-[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 75%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o
+[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp
-[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o
+[ 72%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp
+[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp
-[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp
-[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_writer.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp
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 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp
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-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp
-[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp
-[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o
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+[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp
-[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp
+[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp
+[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_factory.cpp
+[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
@@ -6411,17 +6364,16 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
-[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
@@ -6430,38 +6382,10 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 77%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp
-[ 77%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o
+[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o
+[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
@@ -6470,8 +6394,14 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp
+[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp
+[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp
+[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp
+[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/prm_ms_factory.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17:
@@ -6479,20 +6409,31 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
+In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
+                 from /usr/include/c++/15/algorithm:62,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:15:
+/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/extend_ms_util.cpp:84:39:   required from here
+   84 |     mass_tole_list[j] = std::make_pair(extend_ms_ptr->getPeakPtr(j)->getMonoMass(),
+      |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+   85 |                                        extend_ms_ptr->getPeakPtr(j)->getOrigTolerance());
+      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1164 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
+[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp
+[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/prm_ms_util.cpp
+[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19:
@@ -6500,16 +6441,22 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o
+[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o
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+[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp
+[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
+[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
@@ -6518,28 +6465,22 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group.cpp
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o
+[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o
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+[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
@@ -6548,83 +6489,48 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o
-[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp
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+[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
+[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp
+[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_json_writer.cpp
-[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_profile.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp:17:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
-   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp
-[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o
-/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp
+[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp
-[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp
-[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o
+[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp:19:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:24:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
-   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22:
@@ -6632,145 +6538,40 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
-                 from /usr/include/c++/15/string:53,
-                 from /usr/include/c++/15/bits/locale_classes.h:42,
-                 from /usr/include/c++/15/bits/ios_base.h:43,
-                 from /usr/include/c++/15/ios:46,
-                 from /usr/include/c++/15/bits/ostream.h:43,
-                 from /usr/include/c++/15/ostream:42,
-                 from /usr/include/c++/15/iostream:43,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp:15:
-/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
-   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
-      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1164 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp
-[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp:21:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
-                 from /usr/include/c++/15/bits/stl_tree.h:65,
-                 from /usr/include/c++/15/set:64,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:15:
-/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
-   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
-      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1164 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp
-[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o
+[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature.cpp
+[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_cluster.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
+[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
@@ -6779,8 +6580,11 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_reader.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp
+[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
@@ -6789,41 +6593,31 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o
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-[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o
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CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_grouIn file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_writer.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
@@ -6832,31 +6626,31 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_xml_feature_reader.cpp
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/single_charge_feature.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-p.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -o bin/topfd  -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lboost_chrono /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.11 -lpthread -lz /usr/lib/aarch64-linux-gnu/libonnxruntime.so.1.21.0 /usr/lib/aarch64-linux-gnu/libonnx.so.1 /usr/lib/aarch64-linux-gnu/libonnx_proto.so.1 /usr/lib/aarch64-linux-gnu/libprotobuf.so
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[ 82%] Built target topfd
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp
+[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
@@ -6865,16 +6659,7 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
@@ -6884,10 +6669,8 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
@@ -6897,65 +6680,80 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
+[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp
+[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature_reader.cpp
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
+[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature_writer.cpp
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp
+[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp
+[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o
+[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
@@ -6966,39 +6764,44 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp
+[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp
+[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp
-[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp
-[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
+[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_peak.cpp
+[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o
+[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_row.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
@@ -7009,63 +6812,61 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
-[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
+[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
+[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
+[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_row_header.cpp
+[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
+[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/base_peak_type.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp
+[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/baseline_util.cpp
+[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp
+[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o
+[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp
+[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
@@ -7074,8 +6875,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
@@ -7084,8 +6883,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21:
@@ -7093,8 +6890,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7103,71 +6898,74 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp
-[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp
+[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp
+[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
+[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_json_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
+[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp
-[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp
+[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp
+[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_ms_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o
+[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
@@ -7178,12 +6976,8 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
-[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o
+[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp
-[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7193,6 +6987,34 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_peak.cpp
+[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp
+[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
+[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp
+[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/env_peak.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
@@ -7202,22 +7024,58 @@
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o
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+[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/extend_peak.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp
+[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/ms_header.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o
+[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp
-[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
+[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
@@ -7231,10 +7089,10 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o
+[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp
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 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7246,16 +7104,19 @@
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
+[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_frac_merge.cpp
+[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
+[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7266,51 +7127,43 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o
-[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp
-[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader.cpp
+[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader_util.cpp
+[ 83%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp
-[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o
+[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp
-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17:
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
-   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o
+[ 83%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
@@ -7319,25 +7172,25 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp
+[ 83%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o
+[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_thread_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
@@ -7345,16 +7198,13 @@
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o
+[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp
-[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
@@ -7363,158 +7213,180 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp
+[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
+[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_util.cpp
+[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp
+[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_prsm.cpp
+[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o
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+[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp
+[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
+[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp
+[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp
+[ 85%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp
+[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
-[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o
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-[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o
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-[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp
+[ 85%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp
+[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp
+[ 85%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp
+[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp
-[ 88%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp
+[ 85%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp
+[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
+[ 86%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o
+[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp
+[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp
+[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp
+[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp
+[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7526,16 +7398,43 @@
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp
+[ 86%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp
+[ 86%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp
+[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp
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+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
@@ -7545,129 +7444,163 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp
-[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp
+[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp
+[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 87%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp
-[ 89%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp
+[ 87%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp
+[ 87%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp
+[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp:17:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
+   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
+[ 87%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp
+[ 87%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_json_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Linking CXX executable bin/topdiff
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CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topdiff.dIn file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o
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+[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp
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+[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp
+[ 88%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 88%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp
+[ 88%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp
+[ 88%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_profile.cpp
+In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
+                 from /usr/include/c++/15/string:53,
+                 from /usr/include/c++/15/bits/locale_classes.h:42,
+                 from /usr/include/c++/15/bits/ios_base.h:43,
+                 from /usr/include/c++/15/ios:46,
+                 from /usr/include/c++/15/bits/ostream.h:43,
+                 from /usr/include/c++/15/ostream:42,
+                 from /usr/include/c++/15/iostream:43,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp:15:
+/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
+   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
+      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1164 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-ir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o bin/topdiff  -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[ 90%] Built target topdiff
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/one_ptm_filter_mng.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp
+[ 88%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp
+[ 89%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o
+/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp
+[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'?
+   16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_
+[ 89%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp
+[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23:
@@ -7675,14 +7608,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
@@ -7691,41 +7616,45 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/one_ptm_filter_mng.cpp
-[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp
-[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp
-[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp
+[ 89%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp
+In file included from /usr/include/c++/15/bits/stl_algobase.h:64,
+                 from /usr/include/c++/15/bits/stl_tree.h:65,
+                 from /usr/include/c++/15/set:64,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:15:
+/usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/usr/include/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98:   required from here
+   34 |     MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
+      |                                                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1164 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
+[ 89%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp
+[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp
-[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp
-[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o
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-[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
@@ -7733,28 +7662,34 @@
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp
+[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o
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-In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
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CMakeFiles/topdiff.dir/src/ms/msmap/ms_map_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/msmap/ms_map_row.cpp.o CMakeFiles/topdiff.dir/src/ms/msmap/ms_map_row_header.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_reader.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_reader_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/peak_list_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/precursor.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topdiff.dir/src/prsm/expected_value.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topdiff.dIn file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
@@ -7764,13 +7699,19 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o
+ir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o bin/topdiff  -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+[ 91%] Built target topdiff
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp
+[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
@@ -7784,58 +7725,61 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o
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+[ 91%] Linking CXX executable bin/topfd
+/usr/bin/cmake -E cmake_link_script CMakeFiles/topfd.dir/link.txt --verbose=1
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
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    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp
+p.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -o bin/topfd  -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lboost_chrono /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.11 -lpthread -lz /usr/lib/aarch64-linux-gnu/libonnxruntime.so.1.21.0 /usr/lib/aarch64-linux-gnu/libonnx.so.1 /usr/lib/aarch64-linux-gnu/libonnx_proto.so.1 /usr/lib/aarch64-linux-gnu/libprotobuf.so
+make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
+[ 91%] Built target topfd
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp
+[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
-   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp:20:
@@ -7843,418 +7787,456 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/path_type.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ptm_search_mng.cpp
+[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/comp_shift_low_mem.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp
+[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp
-[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/dist.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.cpp
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.hpp:28,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.cpp:27:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/path_type.cpp
-[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp
-[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ptm_search_mng.cpp
+[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/comp_shift_low_mem.cpp
-[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_mng.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp:17:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph.cpp
-[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp
+[ 92%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.hpp:28,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph_reader.cpp
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align.cpp
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp
+[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp
+[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_dp_node.cpp
-[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp:15:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp:16:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 94%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp
+[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp:31:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp:19:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp
+[ 93%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp
+[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp
+[ 93%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp
+[ 93%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp
+[ 93%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/one_ptm_filter_mng.cpp
+[ 94%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_array.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_array.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_mng.cpp
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp
+[ 94%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp
+[ 94%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp:21:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/prob_peak.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_mass_table_util.cpp
+[ 94%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp
+[ 94%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp:39:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/tdgf_mng.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp:17:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)':
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<shared_ptr<toppic::Residue>*, vector<shared_ptr<toppic::Residue> > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
-   77 |   std::random_shuffle(ori_res.begin(), ori_res.end());
-      |   ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/15/algorithm:63,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17:
-/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here
- 4537 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
-      |     ^~~~~~~~~~~~~~
-/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<char*, __cxx11::basic_string<char> >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
-   86 |     std::random_shuffle(res_seq.begin(), res_seq.end());
-      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here
- 4537 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
-      |     ^~~~~~~~~~~~~~
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_mng.cpp
+[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_processor.cpp:31:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_proteoform.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_proteoform.cpp:24:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp
-[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp
-[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp:18:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp:17:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp
+[ 95%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp:15:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp:19:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_array.cpp
+[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_array.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp:17:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp
-[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp
+[ 96%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp:21:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp
+[ 96%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/dist.cpp
+[ 96%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o
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+[ 96%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o
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+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm_position.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.hpp:28,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.cpp:27:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 96%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.cpp
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph.cpp
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.hpp:28,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.cpp:20:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.hpp:20,
@@ -8263,12 +8245,10 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o
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-[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o
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-[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o
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+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
@@ -8278,52 +8258,108 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o
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-[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o
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-[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/json_transformer.cpp
+[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/json_transformer.cpp
+[ 97%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align.cpp:21:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 97%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp
+[ 97%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_dp_node.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp:24:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 97%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_processor.cpp:31:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp:31:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_proteoform.cpp
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp
+In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19:
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
+   15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
+   16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp:22:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.hpp:20,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_proteoform.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_mass_table_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22,
-                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp:24:
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp:39:
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard]
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)':
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<shared_ptr<toppic::Residue>*, vector<shared_ptr<toppic::Residue> > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
+   77 |   std::random_shuffle(ori_res.begin(), ori_res.end());
+      |   ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/15/algorithm:63,
+                 from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17:
+/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here
+ 4537 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
+      |     ^~~~~~~~~~~~~~
+/build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<char*, __cxx11::basic_string<char> >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
+   86 |     std::random_shuffle(res_seq.begin(), res_seq.end());
+      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here
+ 4537 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
+      |     ^~~~~~~~~~~~~~
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
@@ -8332,12 +8368,14 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp
+[ 98%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21,
@@ -8347,10 +8385,6 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20,
@@ -8359,12 +8393,14 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o
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-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o
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-[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o
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+[ 99%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o
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+[ 99%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o
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+[ 99%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp
 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21,
                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.hpp:20,
@@ -8382,10 +8418,12 @@
    15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_
 /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'?
    16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_
-[ 99%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o
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                  from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp:24:
@@ -8393,21 +8431,19 @@
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CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o 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CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -o bin/toppic  -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts
-make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
-[100%] Built target toppic
 make[2]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles 0
 make[1]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu'
    dh_auto_test -O--buildsystem=cmake
-	rm -fr -- /tmp/dh-xdg-rundir-gDflDZNI
+	rm -fr -- /tmp/dh-xdg-rundir-nMKKI8Ol
    create-stamp debian/debhelper-build-stamp
    dh_testroot -O--buildsystem=cmake
    dh_prep -O--buildsystem=cmake
@@ -8483,18 +8519,18 @@
 	install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1
 	install -m0755 -d debian/toppic/usr/share/man/man1/
 	install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1
-	man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1
 	man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1
 	man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1
+	man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1
 	man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1
-	mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1
-	chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1
-	mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1
-	chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1
 	mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1
 	chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1
 	mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1
 	chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1
+	mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1
+	chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1
+	mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1
+	chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1
    dh_installsystemduser -O--buildsystem=cmake
    dh_perl -O--buildsystem=cmake
    dh_link -O--buildsystem=cmake
@@ -8509,31 +8545,31 @@
 	ln -s toppic.1.gz debian/toppic/usr/share/man/man1/toppic_gui.1.gz
    dh_strip_nondeterminism -O--buildsystem=cmake
 	Using 1760956324 as canonical time
-	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png
    dh_compress -O--buildsystem=cmake
 	cd debian/toppic
 	cd debian/toppic-common
-	chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1
 	chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md
 	gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md
+	chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1
 	gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1
 	cd '/build/reproducible-path/toppic-1.7.10+cleaned1'
 	cd '/build/reproducible-path/toppic-1.7.10+cleaned1'
    dh_fixperms -O--buildsystem=cmake
-	find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
-	find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
+	find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
-	find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
    dh_missing -O--buildsystem=cmake
@@ -8583,16 +8619,16 @@
 	chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/88/b4533d9d2ea5a835c0badad4e72381025d69cf.debug
 	strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui
 	objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/88/b4533d9d2ea5a835c0badad4e72381025d69cf.debug debian/toppic/usr/bin/topindex_gui
-	install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b
-	objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug
-	chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug
-	strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui
-	objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug debian/toppic/usr/bin/topdiff_gui
 	install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6e
 	objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6e/396704a42f2a4dc018bf4d263631490dbfed7c.debug
 	chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6e/396704a42f2a4dc018bf4d263631490dbfed7c.debug
 	strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui
 	objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6e/396704a42f2a4dc018bf4d263631490dbfed7c.debug debian/toppic/usr/bin/topfd_gui
+	install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b
+	objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug
+	chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug
+	strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui
+	objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/28dc1e3d337a1c5f9407e7672905f255603bd9.debug debian/toppic/usr/bin/topdiff_gui
 	install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz
 	cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz
 	rm -fr debian/toppic/usr/lib/debug/.dwz
@@ -8604,7 +8640,7 @@
 	rm -f debian/toppic/DEBIAN/shlibs
    dh_shlibdeps -a -O--buildsystem=cmake
 	install -m0755 -d debian/toppic/DEBIAN
-	dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topfd debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd_gui
+	dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topfd debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topdiff_gui
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 from: /lib/ld-linux-aarch64.so.1
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
@@ -8627,10 +8663,10 @@
 	dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic
 	chmod 0644 -- debian/toppic/DEBIAN/control
    dh_md5sums -O--buildsystem=cmake
-	install -m0755 -d debian/toppic-common/DEBIAN
-	cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	install -m0755 -d debian/toppic/DEBIAN
+	install -m0755 -d debian/toppic-common/DEBIAN
 	cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+	cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	chmod 0644 -- debian/toppic/DEBIAN/md5sums
 	install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN
 	cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
@@ -8638,8 +8674,8 @@
 	chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums
    dh_builddeb -O--buildsystem=cmake
 	dpkg-deb --root-owner-group --build debian/toppic ..
-	dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root ..
 	dpkg-deb --root-owner-group --build debian/toppic-common ..
+	dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root ..
 dpkg-deb: building package 'toppic' in '../toppic_1.7.10+cleaned1-1_arm64.deb'.
 dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.7.10+cleaned1-1_arm64.deb'.
 dpkg-deb: building package 'toppic-common' in '../toppic-common_1.7.10+cleaned1-1_all.deb'.
@@ -8650,12 +8686,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2399832/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/70515 and its subdirectories
-I: Current time: Thu Oct 23 06:27:22 -12 2025
-I: pbuilder-time-stamp: 1761244042
+I: removing directory /srv/workspace/pbuilder/2399832 and its subdirectories
+I: Current time: Thu Nov 26 15:08:19 +14 2026
+I: pbuilder-time-stamp: 1795655299